RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 NUP155O75694 1391 aa12.04□□□□□ -0.48
RNF4-220ENST00000513578 CD109Q6YHK3 1445 aa12.03□□□□□ -0.48
RNF4-220ENST00000513578 KDM5CP41229 1560 aa12.03□□□□□ -0.48
RNF4-220ENST00000513578 SPAG9O60271 1321 aaKnown RBP12.03□□□□□ -0.48
RNF4-220ENST00000513578 SCAPERQ9BY12 1400 aa12.03□□□□□ -0.48
RNF4-220ENST00000513578 TEX14Q8IWB6 1497 aa12.02□□□□□ -0.48
RNF4-220ENST00000513578 KIDINS220Q9ULH0 1771 aa12.02□□□□□ -0.49
RNF4-220ENST00000513578 ZNF518AQ6AHZ1 1483 aa12.02□□□□□ -0.49
RNF4-220ENST00000513578 BCORL1Q5H9F3 1711 aa12□□□□□ -0.49
RNF4-220ENST00000513578 PKD2Q13563 968 aa12□□□□□ -0.49
RNF4-220ENST00000513578 ATP10AO60312 1499 aa12□□□□□ -0.49
RNF4-220ENST00000513578 MLH3Q9UHC1 1453 aa11.99□□□□□ -0.49
RNF4-220ENST00000513578 VWDEQ8N2E2 1590 aa11.99□□□□□ -0.49
RNF4-220ENST00000513578 POGZQ7Z3K3 1410 aa11.98□□□□□ -0.49
RNF4-220ENST00000513578 DIP2BQ9P265 1576 aa11.97□□□□□ -0.49
RNF4-220ENST00000513578 ILDR2Q71H61 639 aa11.97□□□□□ -0.49
RNF4-220ENST00000513578 AFAP1Q8N556 730 aa11.97□□□□□ -0.49
RNF4-220ENST00000513578 FBXO41Q8TF61 875 aa11.97□□□□□ -0.49
RNF4-220ENST00000513578 RICTORQ6R327 1708 aa11.97□□□□□ -0.49
RNF4-220ENST00000513578 TET3O43151 1660 aa11.97□□□□□ -0.49
RNF4-220ENST00000513578 HECW2Q9P2P5 1572 aa11.96□□□□□ -0.49
RNF4-220ENST00000513578 DHX29Q7Z478 1369 aaKnown RBP11.96□□□□□ -0.49
RNF4-220ENST00000513578 KDM4FA0A1W2PPD8 638 aa11.96□□□□□ -0.49
RNF4-220ENST00000513578 L3MBTL2Q969R5 705 aa11.96□□□□□ -0.49
RNF4-220ENST00000513578 RNF17Q9BXT8 1623 aaKnown RBP11.96□□□□□ -0.5
RNF4-220ENST00000513578 PRDM15P57071 1507 aaPredicted RBP11.96□□□□□ -0.5
RNF4-220ENST00000513578 UHRF1BP1Q6BDS2 1440 aa11.94□□□□□ -0.5
RNF4-220ENST00000513578 E9PCH4 1651 aa11.94□□□□□ -0.5
RNF4-220ENST00000513578 MROH1Q8NDA8 1641 aa11.93□□□□□ -0.5
RNF4-220ENST00000513578 PPRC1Q5VV67 1664 aaKnown RBP11.93□□□□□ -0.5
RNF4-220ENST00000513578 LMTK2Q8IWU2 1503 aa11.92□□□□□ -0.5
RNF4-220ENST00000513578 PLA2R1Q13018 1463 aa11.92□□□□□ -0.5
RNF4-220ENST00000513578 SPHKAPQ2M3C7 1700 aa11.91□□□□□ -0.5
RNF4-220ENST00000513578 A2MP01023 1474 aa11.91□□□□□ -0.5
RNF4-220ENST00000513578 ABCA6Q8N139 1617 aa11.91□□□□□ -0.5
RNF4-220ENST00000513578 NEURL4Q96JN8 1562 aa11.91□□□□□ -0.5
RNF4-220ENST00000513578 POLR1AO95602 1720 aaPredicted RBP11.91□□□□□ -0.5
RNF4-220ENST00000513578 ZMYM4Q5VZL5 1548 aa11.91□□□□□ -0.5
RNF4-220ENST00000513578 KIF13AQ9H1H9 1805 aa11.9□□□□□ -0.5
RNF4-220ENST00000513578 FRMPD1Q5SYB0 1578 aa11.9□□□□□ -0.5
RNF4-220ENST00000513578 KANK1Q14678 1352 aa11.9□□□□□ -0.5
RNF4-220ENST00000513578 CEP152O94986 1710 aa11.89□□□□□ -0.51
RNF4-220ENST00000513578 CCDC144AA2RUR9 1427 aa11.89□□□□□ -0.51
RNF4-220ENST00000513578 PTPRTO14522 1441 aa11.89□□□□□ -0.51
RNF4-220ENST00000513578 TRPM2O94759 1503 aa11.89□□□□□ -0.51
RNF4-220ENST00000513578 DIP2CQ9Y2E4 1556 aa11.88□□□□□ -0.51
RNF4-220ENST00000513578 NBPF8Q3BBV2 869 aa11.87□□□□□ -0.51
RNF4-220ENST00000513578 RALGAPBQ86X10 1494 aa11.87□□□□□ -0.51
RNF4-220ENST00000513578 EFCAB6Q5THR3 1501 aa11.86□□□□□ -0.51
RNF4-220ENST00000513578 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.86□□□□□ -0.514e-7■■□□□ 12.7
RNF4-220ENST00000513578 REREQ9P2R6 1566 aa11.86□□□□□ -0.51
RNF4-220ENST00000513578 SPATA31E1Q6ZUB1 1445 aa11.86□□□□□ -0.51
RNF4-220ENST00000513578 ZC3H13Q5T200 1668 aaKnown RBP11.85□□□□□ -0.51
RNF4-220ENST00000513578 EIF4G2P78344 907 aaKnown RBP eCLIP11.85□□□□□ -0.51
RNF4-220ENST00000513578 LAMC1P11047 1609 aa11.85□□□□□ -0.51
RNF4-220ENST00000513578 TSPOAP1O95153 1857 aa11.85□□□□□ -0.51
RNF4-220ENST00000513578 KIF3BO15066 747 aa11.84□□□□□ -0.51
RNF4-220ENST00000513578 STAC3Q96MF2 364 aa11.84□□□□□ -0.51
RNF4-220ENST00000513578 TRPM1Q7Z4N2 1603 aa11.84□□□□□ -0.51
RNF4-220ENST00000513578 FAM69CQ0P6D2 419 aa11.83□□□□□ -0.52
RNF4-220ENST00000513578 CLTCL1P53675 1640 aa11.82□□□□□ -0.52
RNF4-220ENST00000513578 KIF1BO60333 1816 aa11.82□□□□□ -0.52
RNF4-220ENST00000513578 HSPA5P11021 654 aaKnown RBP11.82□□□□□ -0.52
RNF4-220ENST00000513578 MIER1Q8N108 512 aa11.82□□□□□ -0.52
RNF4-220ENST00000513578 MYT1LQ9UL68 1186 aa11.82□□□□□ -0.52
RNF4-220ENST00000513578 PRAG1Q86YV5 1406 aa11.8□□□□□ -0.52
RNF4-220ENST00000513578 CAMSAP1Q5T5Y3 1602 aa11.8□□□□□ -0.52
RNF4-220ENST00000513578 ABCC3O15438 1527 aa11.8□□□□□ -0.52
RNF4-220ENST00000513578 AGLP35573 1532 aa11.8□□□□□ -0.52
RNF4-220ENST00000513578 RAPGEF3O95398 923 aa11.79□□□□□ -0.52
RNF4-220ENST00000513578 IFT172Q9UG01 1749 aa11.79□□□□□ -0.52
RNF4-220ENST00000513578 KIAA1210Q9ULL0 1709 aa11.79□□□□□ -0.52
RNF4-220ENST00000513578 GPRASP1Q5JY77 1395 aa11.79□□□□□ -0.52
RNF4-220ENST00000513578 DISP3Q9P2K9 1392 aa11.79□□□□□ -0.52
RNF4-220ENST00000513578 ARHGAP31Q2M1Z3 1444 aa11.78□□□□□ -0.52
RNF4-220ENST00000513578 DCAF11Q8TEB1 546 aa11.77□□□□□ -0.53
RNF4-220ENST00000513578 ARID4BQ4LE39 1312 aaPredicted RBP11.77□□□□□ -0.53
RNF4-220ENST00000513578 YEATS2Q9ULM3 1422 aa11.77□□□□□ -0.53
RNF4-220ENST00000513578 MADDQ8WXG6 1647 aa11.76□□□□□ -0.53
RNF4-220ENST00000513578 CNTLNQ9NXG0 1405 aa11.76□□□□□ -0.53
RNF4-220ENST00000513578 PIK3C2BO00750 1634 aa11.75□□□□□ -0.53
RNF4-220ENST00000513578 DDX10Q13206 875 aaKnown RBP11.75□□□□□ -0.53
RNF4-220ENST00000513578 USP47Q96K76 1375 aa11.75□□□□□ -0.53
RNF4-220ENST00000513578 CCDC7Q96M83 1385 aa11.75□□□□□ -0.53
RNF4-220ENST00000513578 HIRIP3Q9BW71 556 aaPredicted RBP11.74□□□□□ -0.53
RNF4-220ENST00000513578 WASHC2AQ641Q2 1341 aa11.74□□□□□ -0.53
RNF4-220ENST00000513578 NOS1P29475 1434 aa11.74□□□□□ -0.53
RNF4-220ENST00000513578 NPATQ14207 1427 aa11.74□□□□□ -0.53
RNF4-220ENST00000513578 MYOM2P54296 1465 aa11.74□□□□□ -0.53
RNF4-220ENST00000513578 SIGLEC1Q9BZZ2 1709 aa11.74□□□□□ -0.53
RNF4-220ENST00000513578 ADGRB3O60242 1522 aa11.73□□□□□ -0.53
RNF4-220ENST00000513578 ARHGEF40Q8TER5 1519 aa11.73□□□□□ -0.53
RNF4-220ENST00000513578 MROH2AA6NES4 1674 aa11.72□□□□□ -0.53
RNF4-220ENST00000513578 CFAP65Q6ZU64 1925 aaKnown RBP11.72□□□□□ -0.53
RNF4-220ENST00000513578 PPLO60437 1756 aa11.72□□□□□ -0.53
RNF4-220ENST00000513578 IQGAP1P46940 1657 aa11.71□□□□□ -0.53
RNF4-220ENST00000513578 CARD11Q9BXL7 1154 aa11.71□□□□□ -0.53
RNF4-220ENST00000513578 NRXN1Q9ULB1 1477 aa11.7□□□□□ -0.54
RNF4-220ENST00000513578 ROCK2O75116 1388 aaKnown RBP11.7□□□□□ -0.54
RNF4-220ENST00000513578 WASHC2CQ9Y4E1 1318 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms