RNA–Protein interactions for RNA: ENST00000511732.1

COL1A1-213, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 789 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-213ENST00000511732 KDM5DQ9BY66 1539 aa24.07■■□□□ 1.44
COL1A1-213ENST00000511732 APLP2Q06481 763 aa24.07■■□□□ 1.44
COL1A1-213ENST00000511732 CEP170BQ9Y4F5 1589 aaPredicted RBP24.07■■□□□ 1.44
COL1A1-213ENST00000511732 FAM135AQ9P2D6 1515 aa24.05■■□□□ 1.44
COL1A1-213ENST00000511732 PTPN23Q9H3S7 1636 aa24.04■■□□□ 1.44
COL1A1-213ENST00000511732 FBXO31Q5XUX0 539 aaPredicted RBP24.03■■□□□ 1.44
COL1A1-213ENST00000511732 WASHC2CQ9Y4E1 1318 aa24.03■■□□□ 1.44
COL1A1-213ENST00000511732 RNF17Q9BXT8 1623 aaKnown RBP24.02■■□□□ 1.44
COL1A1-213ENST00000511732 PZPP20742 1482 aa24.01■■□□□ 1.43
COL1A1-213ENST00000511732 NCKAP5LQ9HCH0 1330 aa24.01■■□□□ 1.43
COL1A1-213ENST00000511732 ABCC5O15440 1437 aa24.01■■□□□ 1.43
COL1A1-213ENST00000511732 EIF2AK4Q9P2K8 1649 aaKnown RBP24■■□□□ 1.43
COL1A1-213ENST00000511732 CROCC2H7BZ55 1655 aa24■■□□□ 1.43
COL1A1-213ENST00000511732 A2ML1A8K2U0 1454 aa23.99■■□□□ 1.43
COL1A1-213ENST00000511732 PLA2R1Q13018 1463 aa23.99■■□□□ 1.43
COL1A1-213ENST00000511732 DNMT1P26358 1616 aaKnown RBP23.99■■□□□ 1.43
COL1A1-213ENST00000511732 FGD6Q6ZV73 1430 aa23.98■■□□□ 1.43
COL1A1-213ENST00000511732 MROH1Q8NDA8 1641 aa23.98■■□□□ 1.43
COL1A1-213ENST00000511732 TCOF1Q13428 1488 aaKnown RBP23.97■■□□□ 1.43
COL1A1-213ENST00000511732 LTBP4Q8N2S1 1624 aa23.97■■□□□ 1.43
COL1A1-213ENST00000511732 TNRQ92752 1358 aa23.97■■□□□ 1.43
COL1A1-213ENST00000511732 DUOX2Q9NRD8 1548 aa23.96■■□□□ 1.43
COL1A1-213ENST00000511732 ABCC3O15438 1527 aa23.95■■□□□ 1.43
COL1A1-213ENST00000511732 SHANK2Q9UPX8 1470 aa23.95■■□□□ 1.42
COL1A1-213ENST00000511732 DAPK1P53355 1430 aa23.94■■□□□ 1.42
COL1A1-213ENST00000511732 ZC3H13Q5T200 1668 aaKnown RBP23.94■■□□□ 1.42
COL1A1-213ENST00000511732 PKD2Q13563 968 aa23.92■■□□□ 1.42
COL1A1-213ENST00000511732 KIF15Q9NS87 1388 aa23.91■■□□□ 1.42
COL1A1-213ENST00000511732 CEP152O94986 1710 aa23.91■■□□□ 1.42
COL1A1-213ENST00000511732 RRP7BPQ9NSQ0 103 aa23.9■■□□□ 1.42
COL1A1-213ENST00000511732 SPATA31D1Q6ZQQ2 1576 aa23.86■■□□□ 1.41
COL1A1-213ENST00000511732 ERBINQ96RT1 1412 aa23.86■■□□□ 1.41
COL1A1-213ENST00000511732 NLRP1Q9C000 1473 aa23.86■■□□□ 1.41
COL1A1-213ENST00000511732 ZNF335Q9H4Z2 1342 aaPredicted RBP23.85■■□□□ 1.41
COL1A1-213ENST00000511732 PRDM15P57071 1507 aaPredicted RBP23.85■■□□□ 1.41
COL1A1-213ENST00000511732 POLR1AO95602 1720 aaPredicted RBP23.85■■□□□ 1.41
COL1A1-213ENST00000511732 CHIC2Q9UKJ5 165 aa23.85■■□□□ 1.41
COL1A1-213ENST00000511732 NEURL4Q96JN8 1562 aa23.85■■□□□ 1.41
COL1A1-213ENST00000511732 ERVK-7P63135 1459 aa23.84■■□□□ 1.41
COL1A1-213ENST00000511732 CFAP65Q6ZU64 1925 aaKnown RBP23.84■■□□□ 1.41
COL1A1-213ENST00000511732 UGGT1Q9NYU2 1555 aa23.83■■□□□ 1.41
COL1A1-213ENST00000511732 DEPDC5O75140 1603 aa23.83■■□□□ 1.41
COL1A1-213ENST00000511732 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.82■■□□□ 1.4
COL1A1-213ENST00000511732 IQSEC2Q5JU85 1478 aa23.8■■□□□ 1.4
COL1A1-213ENST00000511732 ANKRD30AQ9BXX3 1397 aa23.79■■□□□ 1.4
COL1A1-213ENST00000511732 THEMISQ8N1K5 641 aaPredicted RBP23.79■■□□□ 1.4
COL1A1-213ENST00000511732 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.78■■□□□ 1.4
COL1A1-213ENST00000511732 FAM50AQ14320 339 aaKnown RBP23.77■■□□□ 1.4
COL1A1-213ENST00000511732 ARHGAP31Q2M1Z3 1444 aa23.76■■□□□ 1.39
COL1A1-213ENST00000511732 ADGRL2O95490 1459 aa23.76■■□□□ 1.39
COL1A1-213ENST00000511732 ANKLE2Q86XL3 938 aa23.76■■□□□ 1.39
COL1A1-213ENST00000511732 VWDEQ8N2E2 1590 aa23.74■■□□□ 1.39
COL1A1-213ENST00000511732 UBR1Q8IWV7 1749 aa23.73■■□□□ 1.39
COL1A1-213ENST00000511732 MED14O60244 1454 aa23.72■■□□□ 1.39
COL1A1-213ENST00000511732 LMTK2Q8IWU2 1503 aa23.7■■□□□ 1.38
COL1A1-213ENST00000511732 NPHP4O75161 1426 aaPredicted RBP23.69■■□□□ 1.38
COL1A1-213ENST00000511732 KANK1Q14678 1352 aa23.69■■□□□ 1.38
COL1A1-213ENST00000511732 IQGAP1P46940 1657 aa23.68■■□□□ 1.38
COL1A1-213ENST00000511732 PPARGC1BQ86YN6 1023 aaKnown RBP23.65■■□□□ 1.38
COL1A1-213ENST00000511732 PIK3C2BO00750 1634 aa23.65■■□□□ 1.38
COL1A1-213ENST00000511732 ANKRD50Q9ULJ7 1429 aa23.65■■□□□ 1.38
COL1A1-213ENST00000511732 CPS1P31327 1500 aa23.63■■□□□ 1.37
COL1A1-213ENST00000511732 EFCAB6Q5THR3 1501 aa23.63■■□□□ 1.37
COL1A1-213ENST00000511732 ARHGAP23Q9P227 1491 aa23.62■■□□□ 1.37
COL1A1-213ENST00000511732 SLIT1O75093 1534 aa23.62■■□□□ 1.37
COL1A1-213ENST00000511732 SYNMO15061 1565 aa23.61■■□□□ 1.37
COL1A1-213ENST00000511732 UBAP1LF5GYI3 381 aa23.61■■□□□ 1.37
COL1A1-213ENST00000511732 LTKP29376 864 aa23.61■■□□□ 1.37
COL1A1-213ENST00000511732 STRCP1A6NGW2 1772 aa23.6■■□□□ 1.37
COL1A1-213ENST00000511732 IDI1Q13907 227 aa23.59■■□□□ 1.37
COL1A1-213ENST00000511732 SCAF11Q99590 1463 aaKnown RBP23.59■■□□□ 1.37
COL1A1-213ENST00000511732 NOS1P29475 1434 aa23.59■■□□□ 1.37
COL1A1-213ENST00000511732 TXNDC2Q86VQ3 553 aa23.57■■□□□ 1.36
COL1A1-213ENST00000511732 KDM5AP29375 1690 aaKnown RBP23.56■■□□□ 1.36
COL1A1-213ENST00000511732 UNC13BO14795 1591 aa23.56■■□□□ 1.36
COL1A1-213ENST00000511732 ROCK1Q13464 1354 aa23.55■■□□□ 1.36
COL1A1-213ENST00000511732 TMEM2Q9UHN6 1383 aa23.54■■□□□ 1.36
COL1A1-213ENST00000511732 TET3O43151 1660 aa23.54■■□□□ 1.36
COL1A1-213ENST00000511732 STAG3Q9UJ98 1225 aa23.52■■□□□ 1.36
COL1A1-213ENST00000511732 RPRD2Q5VT52 1461 aaKnown RBP23.51■■□□□ 1.35
COL1A1-213ENST00000511732 ITGAEP38570 1179 aa23.51■■□□□ 1.35
COL1A1-213ENST00000511732 GCC2Q8IWJ2 1684 aa23.51■■□□□ 1.35
COL1A1-213ENST00000511732 EID1Q9Y6B2 187 aa23.5■■□□□ 1.35
COL1A1-213ENST00000511732 ADGRB3O60242 1522 aa23.49■■□□□ 1.35
COL1A1-213ENST00000511732 LRRC7Q96NW7 1537 aa23.49■■□□□ 1.35
COL1A1-213ENST00000511732 ALKQ9UM73 1620 aa23.48■■□□□ 1.35
COL1A1-213ENST00000511732 SLC52A1Q9NWF4 448 aa23.48■■□□□ 1.35
COL1A1-213ENST00000511732 E9PCH4 1651 aa23.48■■□□□ 1.35
COL1A1-213ENST00000511732 IQGAP3Q86VI3 1631 aa23.46■■□□□ 1.35
COL1A1-213ENST00000511732 MYO5BQ9ULV0 1848 aa23.45■■□□□ 1.34
COL1A1-213ENST00000511732 TOM1O60784 492 aa23.45■■□□□ 1.34
COL1A1-213ENST00000511732 PIP4K2BP78356 416 aa23.45■■□□□ 1.34
COL1A1-213ENST00000511732 DISP3Q9P2K9 1392 aa23.44■■□□□ 1.34
COL1A1-213ENST00000511732 SCAF1Q9H7N4 1312 aaKnown RBP23.42■■□□□ 1.34
COL1A1-213ENST00000511732 XIRP1Q702N8 1843 aaKnown RBP23.42■■□□□ 1.34
COL1A1-213ENST00000511732 RRBP1Q9P2E9 1410 aaKnown RBP23.42■■□□□ 1.34
COL1A1-213ENST00000511732 TMEM131LA2VDJ0 1609 aa23.41■■□□□ 1.34
COL1A1-213ENST00000511732 NUP155O75694 1391 aa23.4■■□□□ 1.34
COL1A1-213ENST00000511732 HSPA1LP34931 641 aa23.39■■□□□ 1.33
COL1A1-213ENST00000511732 SLC26A8Q96RN1 970 aa23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms