RNA–Protein interactions for RNA: ENST00000509995.5

SNF8-207, Transcript of SNF8, ESCRT-II complex subunit, humanhuman

TSL 3

Gene SNF8, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNF8-207ENST00000509995 ANKLE2Q86XL3 938 aa18.28■□□□□ 0.52
SNF8-207ENST00000509995 TNRQ92752 1358 aa18.28■□□□□ 0.52
SNF8-207ENST00000509995 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.28■□□□□ 0.523e-6■□□□□ 10.3
SNF8-207ENST00000509995 ADGBQ8N7X0 1667 aa18.25■□□□□ 0.51
SNF8-207ENST00000509995 UGGT1Q9NYU2 1555 aa18.23■□□□□ 0.51
SNF8-207ENST00000509995 PZPP20742 1482 aa18.22■□□□□ 0.51
SNF8-207ENST00000509995 XIRP1Q702N8 1843 aaKnown RBP18.22■□□□□ 0.51
SNF8-207ENST00000509995 FAM135AQ9P2D6 1515 aa18.21■□□□□ 0.51
SNF8-207ENST00000509995 NLRP1Q9C000 1473 aa18.2■□□□□ 0.5
SNF8-207ENST00000509995 THEMISQ8N1K5 641 aaPredicted RBP18.2■□□□□ 0.5
SNF8-207ENST00000509995 EEA1Q15075 1411 aa18.2■□□□□ 0.5
SNF8-207ENST00000509995 ARHGAP35Q9NRY4 1499 aa18.2■□□□□ 0.5
SNF8-207ENST00000509995 ZC3H13Q5T200 1668 aaKnown RBP18.19■□□□□ 0.5
SNF8-207ENST00000509995 FBXO31Q5XUX0 539 aaPredicted RBP18.19■□□□□ 0.5
SNF8-207ENST00000509995 UPF1Q92900 1129 aaKnown RBP eCLIP18.19■□□□□ 0.5
SNF8-207ENST00000509995 FAM135BQ49AJ0 1406 aa18.17■□□□□ 0.5
SNF8-207ENST00000509995 ZNF777Q9ULD5 760 aaPredicted RBP18.17■□□□□ 0.5
SNF8-207ENST00000509995 KDM5DQ9BY66 1539 aa18.17■□□□□ 0.5
SNF8-207ENST00000509995 HNRNPMP52272 730 aaKnown RBP eCLIP18.16■□□□□ 0.5
SNF8-207ENST00000509995 KIAA1107Q9UPP5 1409 aa18.15■□□□□ 0.5
SNF8-207ENST00000509995 CCDC18Q5T9S5 1454 aa18.14■□□□□ 0.5
SNF8-207ENST00000509995 ROBO1Q9Y6N7 1651 aa18.14■□□□□ 0.49
SNF8-207ENST00000509995 MIA2Q96PC5 1412 aa18.14■□□□□ 0.49
SNF8-207ENST00000509995 PLEKHH2Q8IVE3 1493 aa18.14■□□□□ 0.49
SNF8-207ENST00000509995 GPATCH8Q9UKJ3 1502 aaKnown RBP18.13■□□□□ 0.49
SNF8-207ENST00000509995 DHX29Q7Z478 1369 aaKnown RBP18.05■□□□□ 0.48
SNF8-207ENST00000509995 PHLPP1O60346 1717 aa18.04■□□□□ 0.48
SNF8-207ENST00000509995 SCAF11Q99590 1463 aaKnown RBP18.04■□□□□ 0.48
SNF8-207ENST00000509995 CASKIN1Q8WXD9 1431 aa18.04■□□□□ 0.48
SNF8-207ENST00000509995 UBR1Q8IWV7 1749 aa18.03■□□□□ 0.48
SNF8-207ENST00000509995 WASHC2CQ9Y4E1 1318 aa18.02■□□□□ 0.48
SNF8-207ENST00000509995 LRRC9Q6ZRR7 1453 aa18.02■□□□□ 0.48
SNF8-207ENST00000509995 TRIM52Q96A61 297 aa18.02■□□□□ 0.48
SNF8-207ENST00000509995 JCADQ9P266 1359 aa18.02■□□□□ 0.47
SNF8-207ENST00000509995 RTEL1-TNFRSF6BF6WH68 1400 aa18.01■□□□□ 0.47
SNF8-207ENST00000509995 CFDP1Q9UEE9 299 aaPredicted RBP18.01■□□□□ 0.47
SNF8-207ENST00000509995 MAP3K1Q13233 1512 aa18■□□□□ 0.47
SNF8-207ENST00000509995 KIF3BO15066 747 aa18■□□□□ 0.47
SNF8-207ENST00000509995 LRP6O75581 1613 aa17.99■□□□□ 0.47
SNF8-207ENST00000509995 TMEM94Q12767 1356 aa17.98■□□□□ 0.47
SNF8-207ENST00000509995 MBD5Q9P267 1494 aa17.97■□□□□ 0.47
SNF8-207ENST00000509995 UBTFP17480 764 aaKnown RBP17.97■□□□□ 0.47
SNF8-207ENST00000509995 ZNF772Q68DY9 489 aaPredicted RBP17.97■□□□□ 0.47
SNF8-207ENST00000509995 CDK12Q9NYV4 1490 aaPredicted RBP17.96■□□□□ 0.47
SNF8-207ENST00000509995 ARHGAP23Q9P227 1491 aa17.96■□□□□ 0.47
SNF8-207ENST00000509995 COL16A1Q07092 1604 aaPredicted RBP17.96■□□□□ 0.47
SNF8-207ENST00000509995 SLIT1O75093 1534 aa17.96■□□□□ 0.47
SNF8-207ENST00000509995 ERVK-7P63135 1459 aa17.95■□□□□ 0.46
SNF8-207ENST00000509995 CCNB3Q8WWL7 1395 aa17.95■□□□□ 0.46
SNF8-207ENST00000509995 NCOA2Q15596 1464 aa17.94■□□□□ 0.46
SNF8-207ENST00000509995 FYCO1Q9BQS8 1478 aa17.94■□□□□ 0.46
SNF8-207ENST00000509995 LTKP29376 864 aa17.92■□□□□ 0.46
SNF8-207ENST00000509995 ABCC3O15438 1527 aa17.92■□□□□ 0.46
SNF8-207ENST00000509995 TIAM1Q13009 1591 aa17.91■□□□□ 0.46
SNF8-207ENST00000509995 EHMT2Q96KQ7 1210 aa17.91■□□□□ 0.46
SNF8-207ENST00000509995 SPATA31A6Q5VVP1 1343 aa17.91■□□□□ 0.46
SNF8-207ENST00000509995 ZNF644Q9H582 1327 aaPredicted RBP17.91■□□□□ 0.46
SNF8-207ENST00000509995 RXRBP28702 533 aa17.9■□□□□ 0.46
SNF8-207ENST00000509995 MEX3CQ5U5Q3 659 aaKnown RBP17.9■□□□□ 0.46
SNF8-207ENST00000509995 TXNDC2Q86VQ3 553 aa17.9■□□□□ 0.46
SNF8-207ENST00000509995 CFAP65Q6ZU64 1925 aaKnown RBP17.9■□□□□ 0.46
SNF8-207ENST00000509995 FGD6Q6ZV73 1430 aa17.89■□□□□ 0.46
SNF8-207ENST00000509995 PRDM15P57071 1507 aaPredicted RBP17.89■□□□□ 0.45
SNF8-207ENST00000509995 SHPRHQ149N8 1683 aa17.89■□□□□ 0.45
SNF8-207ENST00000509995 NKTRP30414 1462 aaKnown RBP17.87■□□□□ 0.45
SNF8-207ENST00000509995 CCDC141Q6ZP82 1450 aa17.87■□□□□ 0.45
SNF8-207ENST00000509995 NWD1Q149M9 1564 aa17.86■□□□□ 0.45
SNF8-207ENST00000509995 MSH6P52701 1360 aa17.85■□□□□ 0.45
SNF8-207ENST00000509995 CEP152O94986 1710 aa17.84■□□□□ 0.45
SNF8-207ENST00000509995 CAMSAP2Q08AD1 1489 aa17.84■□□□□ 0.45
SNF8-207ENST00000509995 KCNA6P17658 529 aa17.84■□□□□ 0.45
SNF8-207ENST00000509995 CHIC1Q5VXU3 224 aa17.84■□□□□ 0.45
SNF8-207ENST00000509995 PROSER2Q86WR7 435 aaPredicted RBP17.84■□□□□ 0.45
SNF8-207ENST00000509995 RBM33Q96EV2 1170 aaKnown RBP17.84■□□□□ 0.45
SNF8-207ENST00000509995 SLAIN2Q9P270 581 aa17.84■□□□□ 0.45
SNF8-207ENST00000509995 EID1Q9Y6B2 187 aa17.84■□□□□ 0.45
SNF8-207ENST00000509995 RGS12O14924 1447 aa17.82■□□□□ 0.44
SNF8-207ENST00000509995 KDM5AP29375 1690 aaKnown RBP17.82■□□□□ 0.44
SNF8-207ENST00000509995 PIK3C2BO00750 1634 aa17.8■□□□□ 0.44
SNF8-207ENST00000509995 AHDC1Q5TGY3 1603 aaPredicted RBP17.8■□□□□ 0.44
SNF8-207ENST00000509995 MROH1Q8NDA8 1641 aa17.8■□□□□ 0.44
SNF8-207ENST00000509995 SETBP1Q9Y6X0 1596 aa17.8■□□□□ 0.44
SNF8-207ENST00000509995 TET3O43151 1660 aa17.8■□□□□ 0.44
SNF8-207ENST00000509995 TMEM2Q9UHN6 1383 aa17.79■□□□□ 0.44
SNF8-207ENST00000509995 EP400Q96L91 3159 aa17.79■□□□□ 0.44
SNF8-207ENST00000509995 EIF2AK4Q9P2K8 1649 aaKnown RBP17.79■□□□□ 0.44
SNF8-207ENST00000509995 MTUS2Q5JR59 1369 aa17.79■□□□□ 0.44
SNF8-207ENST00000509995 ZRANB1Q9UGI0 708 aa17.76■□□□□ 0.43
SNF8-207ENST00000509995 DIP2AQ14689 1571 aa17.75■□□□□ 0.43
SNF8-207ENST00000509995 AFF2P51816 1311 aa17.74■□□□□ 0.43
SNF8-207ENST00000509995 FOXD1Q16676 465 aa17.74■□□□□ 0.43
SNF8-207ENST00000509995 SLC26A8Q96RN1 970 aa17.74■□□□□ 0.43
SNF8-207ENST00000509995 ARHGEF5Q12774 1597 aa17.74■□□□□ 0.43
SNF8-207ENST00000509995 EFCAB6Q5THR3 1501 aa17.73■□□□□ 0.43
SNF8-207ENST00000509995 EHBP1L1Q8N3D4 1523 aa17.73■□□□□ 0.43
SNF8-207ENST00000509995 ATAD2Q6PL18 1390 aa17.71■□□□□ 0.43
SNF8-207ENST00000509995 CHD2O14647 1828 aaKnown RBP17.71■□□□□ 0.43
SNF8-207ENST00000509995 NUTM2BA6NNL0 878 aaPredicted RBP17.71■□□□□ 0.43
SNF8-207ENST00000509995 NUTM2EB1AL46 878 aaPredicted RBP17.71■□□□□ 0.43
SNF8-207ENST00000509995 RSPH4AQ5TD94 716 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms