RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 MIA2Q96PC5 1412 aa20.59■□□□□ 0.89
HMGCS1-205ENST00000508319 CERKQ8TCT0 537 aa20.58■□□□□ 0.89
HMGCS1-205ENST00000508319 KIF3BO15066 747 aa20.56■□□□□ 0.88
HMGCS1-205ENST00000508319 RNF17Q9BXT8 1623 aaKnown RBP20.56■□□□□ 0.88
HMGCS1-205ENST00000508319 PLA2R1Q13018 1463 aa20.54■□□□□ 0.88
HMGCS1-205ENST00000508319 TSPY4P0CV99 314 aa20.53■□□□□ 0.88
HMGCS1-205ENST00000508319 TSPY10P0CW01 314 aa20.53■□□□□ 0.88
HMGCS1-205ENST00000508319 PZPP20742 1482 aa20.53■□□□□ 0.88
HMGCS1-205ENST00000508319 CROCC2H7BZ55 1655 aa20.53■□□□□ 0.88
HMGCS1-205ENST00000508319 EIF2AK4Q9P2K8 1649 aaKnown RBP20.53■□□□□ 0.88
HMGCS1-205ENST00000508319 LTBP4Q8N2S1 1624 aa20.51■□□□□ 0.87
HMGCS1-205ENST00000508319 A2ML1A8K2U0 1454 aa20.5■□□□□ 0.87
HMGCS1-205ENST00000508319 TCOF1Q13428 1488 aaKnown RBP20.5■□□□□ 0.87
HMGCS1-205ENST00000508319 DNMT1P26358 1616 aaKnown RBP20.5■□□□□ 0.87
HMGCS1-205ENST00000508319 PTPN23Q9H3S7 1636 aa20.5■□□□□ 0.87
HMGCS1-205ENST00000508319 MROH1Q8NDA8 1641 aa20.49■□□□□ 0.87
HMGCS1-205ENST00000508319 ZC3H13Q5T200 1668 aaKnown RBP20.49■□□□□ 0.87
HMGCS1-205ENST00000508319 SHANK2Q9UPX8 1470 aa20.48■□□□□ 0.87
HMGCS1-205ENST00000508319 ABCC3O15438 1527 aa20.48■□□□□ 0.87
HMGCS1-205ENST00000508319 WASHC2CQ9Y4E1 1318 aa20.47■□□□□ 0.87
HMGCS1-205ENST00000508319 TNRQ92752 1358 aa20.46■□□□□ 0.87
HMGCS1-205ENST00000508319 NCKAP5LQ9HCH0 1330 aa20.46■□□□□ 0.87
HMGCS1-205ENST00000508319 DUOX2Q9NRD8 1548 aa20.45■□□□□ 0.86
HMGCS1-205ENST00000508319 APLP2Q06481 763 aa20.45■□□□□ 0.86
HMGCS1-205ENST00000508319 FBXO31Q5XUX0 539 aaPredicted RBP20.45■□□□□ 0.86
HMGCS1-205ENST00000508319 ABCC5O15440 1437 aa20.44■□□□□ 0.86
HMGCS1-205ENST00000508319 FGD6Q6ZV73 1430 aa20.44■□□□□ 0.86
HMGCS1-205ENST00000508319 PKD2Q13563 968 aa20.43■□□□□ 0.86
HMGCS1-205ENST00000508319 POLR1AO95602 1720 aaPredicted RBP20.43■□□□□ 0.86
HMGCS1-205ENST00000508319 CEP152O94986 1710 aa20.42■□□□□ 0.86
HMGCS1-205ENST00000508319 DAPK1P53355 1430 aa20.41■□□□□ 0.86
HMGCS1-205ENST00000508319 IQSEC2Q5JU85 1478 aa20.41■□□□□ 0.86
HMGCS1-205ENST00000508319 NLRP1Q9C000 1473 aa20.41■□□□□ 0.86
HMGCS1-205ENST00000508319 PRDM15P57071 1507 aaPredicted RBP20.41■□□□□ 0.86
HMGCS1-205ENST00000508319 NEURL4Q96JN8 1562 aa20.41■□□□□ 0.86
HMGCS1-205ENST00000508319 SPATA31D1Q6ZQQ2 1576 aa20.4■□□□□ 0.86
HMGCS1-205ENST00000508319 KIF15Q9NS87 1388 aa20.4■□□□□ 0.86
HMGCS1-205ENST00000508319 ERBINQ96RT1 1412 aa20.39■□□□□ 0.85
HMGCS1-205ENST00000508319 DEPDC5O75140 1603 aa20.37■□□□□ 0.85
HMGCS1-205ENST00000508319 UGGT1Q9NYU2 1555 aa20.37■□□□□ 0.85
HMGCS1-205ENST00000508319 ERVK-7P63135 1459 aa20.37■□□□□ 0.85
HMGCS1-205ENST00000508319 ZNF335Q9H4Z2 1342 aaPredicted RBP20.36■□□□□ 0.85
HMGCS1-205ENST00000508319 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.33■□□□□ 0.84
HMGCS1-205ENST00000508319 RRP7BPQ9NSQ0 103 aa20.31■□□□□ 0.84
HMGCS1-205ENST00000508319 CFAP65Q6ZU64 1925 aaKnown RBP20.31■□□□□ 0.84
HMGCS1-205ENST00000508319 FOXD1Q16676 465 aa20.3■□□□□ 0.84
HMGCS1-205ENST00000508319 ARHGAP31Q2M1Z3 1444 aa20.29■□□□□ 0.84
HMGCS1-205ENST00000508319 ADGRL2O95490 1459 aa20.29■□□□□ 0.84
HMGCS1-205ENST00000508319 UBR1Q8IWV7 1749 aa20.28■□□□□ 0.84
HMGCS1-205ENST00000508319 THEMISQ8N1K5 641 aaPredicted RBP20.28■□□□□ 0.84
HMGCS1-205ENST00000508319 ANKRD30AQ9BXX3 1397 aa20.28■□□□□ 0.84
HMGCS1-205ENST00000508319 MED14O60244 1454 aa20.28■□□□□ 0.84
HMGCS1-205ENST00000508319 VWDEQ8N2E2 1590 aa20.28■□□□□ 0.84
HMGCS1-205ENST00000508319 IQGAP1P46940 1657 aa20.26■□□□□ 0.83
HMGCS1-205ENST00000508319 ANKLE2Q86XL3 938 aa20.25■□□□□ 0.83
HMGCS1-205ENST00000508319 CHIC2Q9UKJ5 165 aa20.25■□□□□ 0.83
HMGCS1-205ENST00000508319 LMTK2Q8IWU2 1503 aa20.25■□□□□ 0.83
HMGCS1-205ENST00000508319 NPHP4O75161 1426 aaPredicted RBP20.24■□□□□ 0.83
HMGCS1-205ENST00000508319 CPS1P31327 1500 aa20.23■□□□□ 0.83
HMGCS1-205ENST00000508319 KANK1Q14678 1352 aa20.21■□□□□ 0.83
HMGCS1-205ENST00000508319 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.21■□□□□ 0.83
HMGCS1-205ENST00000508319 EFCAB6Q5THR3 1501 aa20.21■□□□□ 0.83
HMGCS1-205ENST00000508319 PIK3C2BO00750 1634 aa20.2■□□□□ 0.82
HMGCS1-205ENST00000508319 FAM50AQ14320 339 aaKnown RBP20.2■□□□□ 0.82
HMGCS1-205ENST00000508319 ARHGAP23Q9P227 1491 aa20.19■□□□□ 0.82
HMGCS1-205ENST00000508319 SLIT1O75093 1534 aa20.19■□□□□ 0.82
HMGCS1-205ENST00000508319 SCAF11Q99590 1463 aaKnown RBP20.18■□□□□ 0.82
HMGCS1-205ENST00000508319 SYNMO15061 1565 aa20.17■□□□□ 0.82
HMGCS1-205ENST00000508319 KDM5AP29375 1690 aaKnown RBP20.17■□□□□ 0.82
HMGCS1-205ENST00000508319 STRCP1A6NGW2 1772 aa20.17■□□□□ 0.82
HMGCS1-205ENST00000508319 UBAP1LF5GYI3 381 aa20.16■□□□□ 0.82
HMGCS1-205ENST00000508319 ANKRD50Q9ULJ7 1429 aa20.16■□□□□ 0.82
HMGCS1-205ENST00000508319 UNC13BO14795 1591 aa20.12■□□□□ 0.81
HMGCS1-205ENST00000508319 NOS1P29475 1434 aa20.12■□□□□ 0.81
HMGCS1-205ENST00000508319 TET3O43151 1660 aa20.11■□□□□ 0.81
HMGCS1-205ENST00000508319 LTKP29376 864 aa20.11■□□□□ 0.81
HMGCS1-205ENST00000508319 ADGRB3O60242 1522 aa20.1■□□□□ 0.81
HMGCS1-205ENST00000508319 RPRD2Q5VT52 1461 aaKnown RBP20.1■□□□□ 0.81
HMGCS1-205ENST00000508319 TMEM2Q9UHN6 1383 aa20.09■□□□□ 0.81
HMGCS1-205ENST00000508319 ALKQ9UM73 1620 aa20.09■□□□□ 0.81
HMGCS1-205ENST00000508319 GCC2Q8IWJ2 1684 aa20.09■□□□□ 0.81
HMGCS1-205ENST00000508319 ROCK1Q13464 1354 aa20.08■□□□□ 0.8
HMGCS1-205ENST00000508319 LRRC7Q96NW7 1537 aa20.07■□□□□ 0.8
HMGCS1-205ENST00000508319 IDI1Q13907 227 aa20.06■□□□□ 0.8
HMGCS1-205ENST00000508319 TXNDC2Q86VQ3 553 aa20.06■□□□□ 0.8
HMGCS1-205ENST00000508319 DISP3Q9P2K9 1392 aa20.06■□□□□ 0.8
HMGCS1-205ENST00000508319 IQGAP3Q86VI3 1631 aa20.04■□□□□ 0.8
HMGCS1-205ENST00000508319 EID1Q9Y6B2 187 aa20.03■□□□□ 0.8
HMGCS1-205ENST00000508319 E9PCH4 1651 aa20.03■□□□□ 0.8
HMGCS1-205ENST00000508319 TOM1O60784 492 aa20.02■□□□□ 0.8
HMGCS1-205ENST00000508319 STAG3Q9UJ98 1225 aa20.02■□□□□ 0.8
HMGCS1-205ENST00000508319 XIRP1Q702N8 1843 aaKnown RBP20.02■□□□□ 0.79
HMGCS1-205ENST00000508319 MYO5BQ9ULV0 1848 aa20.02■□□□□ 0.79
HMGCS1-205ENST00000508319 SLC52A1Q9NWF4 448 aa20■□□□□ 0.79
HMGCS1-205ENST00000508319 PIP4K2BP78356 416 aa19.99■□□□□ 0.79
HMGCS1-205ENST00000508319 PPARGC1BQ86YN6 1023 aaKnown RBP19.99■□□□□ 0.79
HMGCS1-205ENST00000508319 SCAF1Q9H7N4 1312 aaKnown RBP19.99■□□□□ 0.79
HMGCS1-205ENST00000508319 TMEM131LA2VDJ0 1609 aa19.98■□□□□ 0.79
HMGCS1-205ENST00000508319 ZFYVE9O95405 1425 aa19.97■□□□□ 0.79
HMGCS1-205ENST00000508319 HSPA1LP34931 641 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms