RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 EVI5O60447 810 aa7.97□□□□□ -1.13
USP53-204ENST00000507906 MMRN1Q13201 1228 aa7.97□□□□□ -1.13
USP53-204ENST00000507906 PARP9Q8IXQ6 854 aa7.97□□□□□ -1.13
USP53-204ENST00000507906 AMHR2Q16671 573 aa7.95□□□□□ -1.14
USP53-204ENST00000507906 KRTAP3-3Q9BYR6 98 aa7.95□□□□□ -1.14
USP53-204ENST00000507906 KRTAP3-2Q9BYR7 98 aa7.95□□□□□ -1.14
USP53-204ENST00000507906 ZNF316A6NFI3 1004 aaPredicted RBP7.94□□□□□ -1.14
USP53-204ENST00000507906 FCHSD2O94868 740 aa7.94□□□□□ -1.14
USP53-204ENST00000507906 PTGDRQ13258 359 aa7.94□□□□□ -1.14
USP53-204ENST00000507906 REPIN1Q9BWE0 567 aaKnown RBP7.94□□□□□ -1.14
USP53-204ENST00000507906 HIC1Q14526 733 aa7.93□□□□□ -1.14
USP53-204ENST00000507906 PTCD2Q8WV60 388 aaKnown RBP7.93□□□□□ -1.14
USP53-204ENST00000507906 NPDC1Q9NQX5 325 aaPredicted RBP7.93□□□□□ -1.14
USP53-204ENST00000507906 CDHR5Q9HBB8 845 aa7.92□□□□□ -1.14
USP53-204ENST00000507906 ANO8Q9HCE9 1232 aaPredicted RBP7.92□□□□□ -1.14
USP53-204ENST00000507906 ERBB3P21860 1342 aa7.92□□□□□ -1.14
USP53-204ENST00000507906 DOK7Q18PE1 504 aa7.91□□□□□ -1.14
USP53-204ENST00000507906 TBC1D12O60347 775 aa7.9□□□□□ -1.14
USP53-204ENST00000507906 VARS2Q5ST30 1063 aaKnown RBP7.9□□□□□ -1.14
USP53-204ENST00000507906 MS4A1P11836 297 aa7.89□□□□□ -1.15
USP53-204ENST00000507906 HOXB1P14653 301 aaPredicted RBP7.89□□□□□ -1.15
USP53-204ENST00000507906 PHOX2BQ99453 314 aa7.89□□□□□ -1.15
USP53-204ENST00000507906 ZMYND15Q9H091 742 aa7.89□□□□□ -1.15
USP53-204ENST00000507906 HOMEZQ8IX15 550 aa7.88□□□□□ -1.15
USP53-204ENST00000507906 KHSRPQ92945 711 aaKnown RBP eCLIP7.88□□□□□ -1.15
USP53-204ENST00000507906 RIMBP2O15034 1052 aa7.86□□□□□ -1.15
USP53-204ENST00000507906 SLC34A2O95436 690 aa7.86□□□□□ -1.15
USP53-204ENST00000507906 TSR1Q2NL82 804 aaKnown RBP7.86□□□□□ -1.15
USP53-204ENST00000507906 GIGYF2Q6Y7W6 1299 aaKnown RBP7.86□□□□□ -1.15
USP53-204ENST00000507906 DDRGK1Q96HY6 314 aa7.86□□□□□ -1.15
USP53-204ENST00000507906 TMUB1Q9BVT8 246 aa7.86□□□□□ -1.15
USP53-204ENST00000507906 DAXXQ9UER7 740 aaPredicted RBP7.86□□□□□ -1.15
USP53-204ENST00000507906 PCDHGA10Q9Y5H3 936 aa7.86□□□□□ -1.15
USP53-204ENST00000507906 KDM4FA0A1W2PPD8 638 aa7.85□□□□□ -1.15
USP53-204ENST00000507906 EN1Q05925 392 aaPredicted RBP7.85□□□□□ -1.15
USP53-204ENST00000507906 TTLL12Q14166 644 aaPredicted RBP7.85□□□□□ -1.15
USP53-204ENST00000507906 ARSIQ5FYB1 569 aa7.85□□□□□ -1.15
USP53-204ENST00000507906 RBM33Q96EV2 1170 aaKnown RBP7.85□□□□□ -1.15
USP53-204ENST00000507906 FAM161AQ3B820 660 aa7.84□□□□□ -1.15
USP53-204ENST00000507906 C1orf115Q9H7X2 142 aa7.84□□□□□ -1.15
USP53-204ENST00000507906 NLRP7Q8WX94 980 aa7.83□□□□□ -1.16
USP53-204ENST00000507906 ONECUT3O60422 494 aaPredicted RBP7.82□□□□□ -1.16
USP53-204ENST00000507906 PHF14O94880 888 aa7.82□□□□□ -1.16
USP53-204ENST00000507906 GPR153Q6NV75 609 aa7.82□□□□□ -1.16
USP53-204ENST00000507906 PCDHGA4Q9Y5G9 962 aa7.82□□□□□ -1.16
USP53-204ENST00000507906 MAP3K7O43318 606 aa7.81□□□□□ -1.16
USP53-204ENST00000507906 UBTFP17480 764 aaKnown RBP7.81□□□□□ -1.16
USP53-204ENST00000507906 MDM2Q00987 491 aaPredicted RBP7.8□□□□□ -1.16
USP53-204ENST00000507906 EPAS1Q99814 870 aa7.8□□□□□ -1.16
USP53-204ENST00000507906 RSPH6AQ9H0K4 717 aa7.8□□□□□ -1.16
USP53-204ENST00000507906 GOPCQ9HD26 462 aa7.8□□□□□ -1.16
USP53-204ENST00000507906 TYW1BQ6NUM6 668 aa7.77□□□□□ -1.17
USP53-204ENST00000507906 ARID3CA6NKF2 412 aa7.76□□□□□ -1.17
USP53-204ENST00000507906 NUDT7P0C024 238 aa7.76□□□□□ -1.17
USP53-204ENST00000507906 SSTR3P32745 418 aaPredicted RBP7.76□□□□□ -1.17
USP53-204ENST00000507906 PROCA1Q8NCQ7 364 aaPredicted RBP7.76□□□□□ -1.17
USP53-204ENST00000507906 ZSWIM6Q9HCJ5 1215 aa7.76□□□□□ -1.17
USP53-204ENST00000507906 CLCN1P35523 988 aa7.75□□□□□ -1.17
USP53-204ENST00000507906 FOSBP53539 338 aa7.75□□□□□ -1.17
USP53-204ENST00000507906 ANKRD13DQ6ZTN6 518 aa7.75□□□□□ -1.17
USP53-204ENST00000507906 METTL3Q86U44 580 aaKnown RBP7.75□□□□□ -1.17
USP53-204ENST00000507906 GPCPD1Q9NPB8 672 aa7.75□□□□□ -1.17
USP53-204ENST00000507906 ADGRG1Q9Y653 693 aa7.75□□□□□ -1.17
USP53-204ENST00000507906 SH3D19Q5HYK7 790 aa7.74□□□□□ -1.17
USP53-204ENST00000507906 C6orf132Q5T0Z8 1188 aa7.74□□□□□ -1.17
USP53-204ENST00000507906 PADI6Q6TGC4 694 aa7.74□□□□□ -1.17
USP53-204ENST00000507906 TTC13Q8NBP0 860 aa7.74□□□□□ -1.17
USP53-204ENST00000507906 RNF166Q96A37 237 aaPredicted RBP7.74□□□□□ -1.17
USP53-204ENST00000507906 CLUAP1Q96AJ1 413 aa7.74□□□□□ -1.17
USP53-204ENST00000507906 JPH4Q96JJ6 628 aa7.74□□□□□ -1.17
USP53-204ENST00000507906 FAM217BQ9NTX9 383 aaPredicted RBP7.74□□□□□ -1.17
USP53-204ENST00000507906 FBXO31Q5XUX0 539 aaPredicted RBP7.73□□□□□ -1.17
USP53-204ENST00000507906 ZNF687Q8N1G0 1237 aa7.73□□□□□ -1.17
USP53-204ENST00000507906 PCMTD1Q96MG8 357 aaPredicted RBP7.73□□□□□ -1.17
USP53-204ENST00000507906 BEGAINQ9BUH8 593 aa7.73□□□□□ -1.17
USP53-204ENST00000507906 FLIIQ13045 1269 aa7.72□□□□□ -1.17
USP53-204ENST00000507906 PXYLP1Q8TE99 480 aa7.72□□□□□ -1.17
USP53-204ENST00000507906 FBXW7Q969H0 707 aa7.72□□□□□ -1.17
USP53-204ENST00000507906 ARID3AQ99856 593 aa7.72□□□□□ -1.17
USP53-204ENST00000507906 ADAM33Q9BZ11 813 aa7.72□□□□□ -1.17
USP53-204ENST00000507906 POLR3EQ9NVU0 708 aa7.72□□□□□ -1.17
USP53-204ENST00000507906 SKIV2LQ15477 1246 aaKnown RBP7.71□□□□□ -1.18
USP53-204ENST00000507906 FAM198AQ9UFP1 575 aa7.71□□□□□ -1.18
USP53-204ENST00000507906 MYT1LQ9UL68 1186 aa7.71□□□□□ -1.18
USP53-204ENST00000507906 AXIN2Q9Y2T1 843 aa7.71□□□□□ -1.18
USP53-204ENST00000507906 C3orf80F5H4A9 247 aa7.7□□□□□ -1.18
USP53-204ENST00000507906 ZNF454Q8N9F8 522 aa7.7□□□□□ -1.18
USP53-204ENST00000507906 LHX6Q9UPM6 363 aa7.7□□□□□ -1.18
USP53-204ENST00000507906 APBB1O00213 710 aa7.69□□□□□ -1.18
USP53-204ENST00000507906 MCM6Q14566 821 aa7.69□□□□□ -1.18
USP53-204ENST00000507906 ZDHHC16Q969W1 377 aa7.69□□□□□ -1.18
USP53-204ENST00000507906 OATP04181 439 aa7.68□□□□□ -1.18
USP53-204ENST00000507906 MYSM1Q5VVJ2 828 aa7.68□□□□□ -1.18
USP53-204ENST00000507906 POM121Q96HA1 1249 aa7.68□□□□□ -1.18
USP53-204ENST00000507906 COL9A1P20849 921 aa7.67□□□□□ -1.18
USP53-204ENST00000507906 PRSS12P56730 875 aa7.67□□□□□ -1.18
USP53-204ENST00000507906 A6NJR5 290 aa7.66□□□□□ -1.18
USP53-204ENST00000507906 TRAK2O60296 914 aa7.66□□□□□ -1.18
USP53-204ENST00000507906 CDCA7LQ96GN5 454 aa7.66□□□□□ -1.18
USP53-204ENST00000507906 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms