RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 GPR153Q6NV75 609 aa8.58□□□□□ -1.04
HMGB1P28-201ENST00000507778 KHSRPQ92945 711 aaKnown RBP eCLIP8.58□□□□□ -1.04
HMGB1P28-201ENST00000507778 FECHP22830 423 aa8.57□□□□□ -1.04
HMGB1P28-201ENST00000507778 PDE4DQ08499 809 aa8.57□□□□□ -1.04
HMGB1P28-201ENST00000507778 ZNF454Q8N9F8 522 aa8.57□□□□□ -1.04
HMGB1P28-201ENST00000507778 CCDC102AQ96A19 550 aa8.57□□□□□ -1.04
HMGB1P28-201ENST00000507778 CDHR5Q9HBB8 845 aa8.57□□□□□ -1.04
HMGB1P28-201ENST00000507778 NPDC1Q9NQX5 325 aaPredicted RBP8.57□□□□□ -1.04
HMGB1P28-201ENST00000507778 PCDH10Q9P2E7 1040 aa8.57□□□□□ -1.04
HMGB1P28-201ENST00000507778 TSR1Q2NL82 804 aaKnown RBP8.56□□□□□ -1.04
HMGB1P28-201ENST00000507778 ZDHHC16Q969W1 377 aa8.56□□□□□ -1.04
HMGB1P28-201ENST00000507778 GPBP1L1Q9HC44 474 aaPredicted RBP8.54□□□□□ -1.04
HMGB1P28-201ENST00000507778 GTF3C3Q9Y5Q9 886 aa8.54□□□□□ -1.04
HMGB1P28-201ENST00000507778 C6orf132Q5T0Z8 1188 aa8.53□□□□□ -1.04
HMGB1P28-201ENST00000507778 ST18O60284 1047 aa8.52□□□□□ -1.05
HMGB1P28-201ENST00000507778 CERKQ8TCT0 537 aa8.52□□□□□ -1.05
HMGB1P28-201ENST00000507778 KDM4CQ9H3R0 1056 aa8.52□□□□□ -1.05
HMGB1P28-201ENST00000507778 DAXXQ9UER7 740 aaPredicted RBP8.52□□□□□ -1.05
HMGB1P28-201ENST00000507778 LHX6Q9UPM6 363 aa8.52□□□□□ -1.05
HMGB1P28-201ENST00000507778 AMHR2Q16671 573 aa8.51□□□□□ -1.05
HMGB1P28-201ENST00000507778 ADAM33Q9BZ11 813 aa8.51□□□□□ -1.05
HMGB1P28-201ENST00000507778 PLSCR2Q9NRY7 297 aa8.51□□□□□ -1.05
HMGB1P28-201ENST00000507778 PSDA5PKW4 1024 aaPredicted RBP8.5□□□□□ -1.05
HMGB1P28-201ENST00000507778 LCE2DQ5TA82 110 aaPredicted RBP8.5□□□□□ -1.05
HMGB1P28-201ENST00000507778 HOXB1P14653 301 aaPredicted RBP8.48□□□□□ -1.05
HMGB1P28-201ENST00000507778 PPP4R3BQ5MIZ7 849 aa8.48□□□□□ -1.05
HMGB1P28-201ENST00000507778 IL27Q8NEV9 243 aa8.48□□□□□ -1.05
HMGB1P28-201ENST00000507778 TTLL12Q14166 644 aaPredicted RBP8.46□□□□□ -1.06
HMGB1P28-201ENST00000507778 PARP9Q8IXQ6 854 aa8.46□□□□□ -1.06
HMGB1P28-201ENST00000507778 OATP04181 439 aa8.45□□□□□ -1.06
HMGB1P28-201ENST00000507778 PRSS12P56730 875 aa8.45□□□□□ -1.06
HMGB1P28-201ENST00000507778 PADI6Q6TGC4 694 aa8.45□□□□□ -1.06
HMGB1P28-201ENST00000507778 BCL2L12Q9HB09 334 aa8.45□□□□□ -1.06
HMGB1P28-201ENST00000507778 RBM27Q9P2N5 1060 aaKnown RBP8.45□□□□□ -1.06
HMGB1P28-201ENST00000507778 PTPREP23469 700 aa8.43□□□□□ -1.06
HMGB1P28-201ENST00000507778 TTC13Q8NBP0 860 aa8.43□□□□□ -1.06
HMGB1P28-201ENST00000507778 CDCA7LQ96GN5 454 aa8.43□□□□□ -1.06
HMGB1P28-201ENST00000507778 FAM117AQ9C073 453 aa8.43□□□□□ -1.06
HMGB1P28-201ENST00000507778 CLCN1P35523 988 aa8.42□□□□□ -1.06
HMGB1P28-201ENST00000507778 FAM161AQ3B820 660 aa8.42□□□□□ -1.06
HMGB1P28-201ENST00000507778 CDAN1Q8IWY9 1227 aa8.42□□□□□ -1.06
HMGB1P28-201ENST00000507778 DDRGK1Q96HY6 314 aa8.42□□□□□ -1.06
HMGB1P28-201ENST00000507778 ADGRG1Q9Y653 693 aa8.42□□□□□ -1.06
HMGB1P28-201ENST00000507778 COL9A1P20849 921 aa8.41□□□□□ -1.06
HMGB1P28-201ENST00000507778 GIGYF2Q6Y7W6 1299 aaKnown RBP8.41□□□□□ -1.06
HMGB1P28-201ENST00000507778 METTL3Q86U44 580 aaKnown RBP8.41□□□□□ -1.06
HMGB1P28-201ENST00000507778 MARVELD3Q96A59 401 aa8.41□□□□□ -1.06
HMGB1P28-201ENST00000507778 PHOX2BQ99453 314 aa8.41□□□□□ -1.06
HMGB1P28-201ENST00000507778 PPP1R3GB7ZBB8 358 aa8.4□□□□□ -1.06
HMGB1P28-201ENST00000507778 MDM2Q00987 491 aaPredicted RBP8.4□□□□□ -1.06
HMGB1P28-201ENST00000507778 PXYLP1Q8TE99 480 aa8.4□□□□□ -1.06
HMGB1P28-201ENST00000507778 REPIN1Q9BWE0 567 aaKnown RBP8.4□□□□□ -1.06
HMGB1P28-201ENST00000507778 GPCPD1Q9NPB8 672 aa8.4□□□□□ -1.06
HMGB1P28-201ENST00000507778 EMP3P54852 163 aa8.39□□□□□ -1.07
HMGB1P28-201ENST00000507778 ERICH6Q7L0X2 663 aa8.39□□□□□ -1.07
HMGB1P28-201ENST00000507778 RBM46Q8TBY0 533 aaKnown RBP8.39□□□□□ -1.07
HMGB1P28-201ENST00000507778 TMUB1Q9BVT8 246 aa8.39□□□□□ -1.07
HMGB1P28-201ENST00000507778 PLEKHG3A1L390 1219 aa8.38□□□□□ -1.07
HMGB1P28-201ENST00000507778 MS4A1P11836 297 aa8.37□□□□□ -1.07
HMGB1P28-201ENST00000507778 KCNH8Q96L42 1107 aa8.37□□□□□ -1.07
HMGB1P28-201ENST00000507778 FAM198AQ9UFP1 575 aa8.37□□□□□ -1.07
HMGB1P28-201ENST00000507778 KCNK17Q96T54 332 aa8.36□□□□□ -1.07
HMGB1P28-201ENST00000507778 ERBB3P21860 1342 aa8.35□□□□□ -1.07
HMGB1P28-201ENST00000507778 SSTR3P32745 418 aaPredicted RBP8.35□□□□□ -1.07
HMGB1P28-201ENST00000507778 PACS2Q86VP3 889 aa8.35□□□□□ -1.07
HMGB1P28-201ENST00000507778 NLRP7Q8WX94 980 aa8.35□□□□□ -1.07
HMGB1P28-201ENST00000507778 TSKSQ9UJT2 592 aa8.35□□□□□ -1.07
HMGB1P28-201ENST00000507778 TRIM6-TRIM34B2RNG4 842 aa8.34□□□□□ -1.07
HMGB1P28-201ENST00000507778 TIMELESSQ9UNS1 1208 aa8.34□□□□□ -1.07
HMGB1P28-201ENST00000507778 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.33□□□□□ -1.08
HMGB1P28-201ENST00000507778 FAM205CA6NFA0 338 aa8.33□□□□□ -1.08
HMGB1P28-201ENST00000507778 ONECUT3O60422 494 aaPredicted RBP8.33□□□□□ -1.08
HMGB1P28-201ENST00000507778 VARS2Q5ST30 1063 aaKnown RBP8.33□□□□□ -1.08
HMGB1P28-201ENST00000507778 NUDT18Q6ZVK8 323 aa8.33□□□□□ -1.08
HMGB1P28-201ENST00000507778 EYA1Q99502 592 aa8.33□□□□□ -1.08
HMGB1P28-201ENST00000507778 RCCD1A6NED2 376 aa8.32□□□□□ -1.08
HMGB1P28-201ENST00000507778 NBPF26B4DH59 902 aa8.32□□□□□ -1.08
HMGB1P28-201ENST00000507778 TATDN2Q93075 761 aa8.32□□□□□ -1.08
HMGB1P28-201ENST00000507778 GOPCQ9HD26 462 aa8.32□□□□□ -1.08
HMGB1P28-201ENST00000507778 FAM217BQ9NTX9 383 aaPredicted RBP8.32□□□□□ -1.08
HMGB1P28-201ENST00000507778 PNMA3Q9UL41 463 aa8.32□□□□□ -1.08
HMGB1P28-201ENST00000507778 ARHGAP33O14559 1287 aa8.31□□□□□ -1.08
HMGB1P28-201ENST00000507778 C14orf37Q86TY3 774 aa8.31□□□□□ -1.08
HMGB1P28-201ENST00000507778 BEGAINQ9BUH8 593 aa8.31□□□□□ -1.08
HMGB1P28-201ENST00000507778 PSEN2P49810 448 aa8.3□□□□□ -1.08
HMGB1P28-201ENST00000507778 PROX2Q3B8N5 592 aa8.3□□□□□ -1.08
HMGB1P28-201ENST00000507778 ZBED2Q9BTP6 218 aa8.3□□□□□ -1.08
HMGB1P28-201ENST00000507778 C3orf80F5H4A9 247 aa8.29□□□□□ -1.08
HMGB1P28-201ENST00000507778 DNAJB2P25686 324 aa8.29□□□□□ -1.08
HMGB1P28-201ENST00000507778 HS3ST6Q96QI5 342 aa8.29□□□□□ -1.08
HMGB1P28-201ENST00000507778 RSPH6AQ9H0K4 717 aa8.29□□□□□ -1.08
HMGB1P28-201ENST00000507778 KIAA1468Q9P260 1216 aa8.29□□□□□ -1.08
HMGB1P28-201ENST00000507778 SMAPO00193 183 aa8.27□□□□□ -1.09
HMGB1P28-201ENST00000507778 PBX2P40425 430 aa8.27□□□□□ -1.09
HMGB1P28-201ENST00000507778 PCMTD1Q96MG8 357 aaPredicted RBP8.27□□□□□ -1.09
HMGB1P28-201ENST00000507778 SH3D19Q5HYK7 790 aa8.26□□□□□ -1.09
HMGB1P28-201ENST00000507778 ZNF687Q8N1G0 1237 aa8.26□□□□□ -1.09
HMGB1P28-201ENST00000507778 SLC4A5Q9BY07 1137 aa8.26□□□□□ -1.09
HMGB1P28-201ENST00000507778 AXIN2Q9Y2T1 843 aa8.26□□□□□ -1.09
HMGB1P28-201ENST00000507778 SKIV2LQ15477 1246 aaKnown RBP8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms