RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 BLMP54132 1417 aaPredicted RBP23.53■■□□□ 1.36
NUP54-205ENST00000507257 PRG4Q92954 1404 aaPredicted RBP23.53■■□□□ 1.36
NUP54-205ENST00000507257 LAMC1P11047 1609 aa23.52■■□□□ 1.36
NUP54-205ENST00000507257 NEFMP07197 916 aa23.52■■□□□ 1.36
NUP54-205ENST00000507257 CDC42BPAQ5VT25 1732 aa23.51■■□□□ 1.35
NUP54-205ENST00000507257 ST20-MTHFSA0A0A6YYL1 179 aa23.51■■□□□ 1.35
NUP54-205ENST00000507257 TRPM1Q7Z4N2 1603 aa23.5■■□□□ 1.35
NUP54-205ENST00000507257 ARID3CA6NKF2 412 aa23.49■■□□□ 1.35
NUP54-205ENST00000507257 NPM2Q86SE8 214 aaKnown RBP23.47■■□□□ 1.35
NUP54-205ENST00000507257 NUP155O75694 1391 aa23.47■■□□□ 1.35
NUP54-205ENST00000507257 PRKCSHP14314 528 aaPredicted RBP23.47■■□□□ 1.35
NUP54-205ENST00000507257 CNGB1Q14028 1251 aaPredicted RBP23.47■■□□□ 1.35
NUP54-205ENST00000507257 GPRASP1Q5JY77 1395 aa23.45■■□□□ 1.34
NUP54-205ENST00000507257 C9orf84Q5VXU9 1444 aa23.44■■□□□ 1.34
NUP54-205ENST00000507257 IFT140Q96RY7 1462 aa23.44■■□□□ 1.34
NUP54-205ENST00000507257 MRC2Q9UBG0 1479 aa23.44■■□□□ 1.34
NUP54-205ENST00000507257 PER1O15534 1290 aaPredicted RBP23.43■■□□□ 1.34
NUP54-205ENST00000507257 EIF4G3O43432 1585 aaKnown RBP23.43■■□□□ 1.34
NUP54-205ENST00000507257 GRIN2AQ12879 1464 aa23.43■■□□□ 1.34
NUP54-205ENST00000507257 ZNF608Q9ULD9 1512 aaPredicted RBP23.42■■□□□ 1.34
NUP54-205ENST00000507257 COL17A1Q9UMD9 1497 aaPredicted RBP23.42■■□□□ 1.34
NUP54-205ENST00000507257 ARHGEF5Q12774 1597 aa23.42■■□□□ 1.34
NUP54-205ENST00000507257 IL27Q8NEV9 243 aa23.42■■□□□ 1.34
NUP54-205ENST00000507257 PRAG1Q86YV5 1406 aa23.41■■□□□ 1.34
NUP54-205ENST00000507257 LAS1LQ9Y4W2 734 aaKnown RBP23.41■■□□□ 1.34
NUP54-205ENST00000507257 ABCC10Q5T3U5 1492 aa23.4■■□□□ 1.34
NUP54-205ENST00000507257 PRDM15P57071 1507 aaPredicted RBP23.38■■□□□ 1.33
NUP54-205ENST00000507257 ANO8Q9HCE9 1232 aaPredicted RBP23.37■■□□□ 1.33
NUP54-205ENST00000507257 KDM2BQ8NHM5 1336 aa23.37■■□□□ 1.33
NUP54-205ENST00000507257 SENP3-EIF4A1A0A087X0R7 540 aa23.35■■□□□ 1.33
NUP54-205ENST00000507257 PLB1Q6P1J6 1458 aa23.35■■□□□ 1.33
NUP54-205ENST00000507257 DCAF11Q8TEB1 546 aa23.35■■□□□ 1.33
NUP54-205ENST00000507257 CDCA7LQ96GN5 454 aa23.34■■□□□ 1.33
NUP54-205ENST00000507257 GSE1Q14687 1217 aa23.33■■□□□ 1.33
NUP54-205ENST00000507257 CRBNQ96SW2 442 aa23.33■■□□□ 1.33
NUP54-205ENST00000507257 EIF2AK4Q9P2K8 1649 aaKnown RBP23.33■■□□□ 1.33
NUP54-205ENST00000507257 SALL2Q9Y467 1007 aaPredicted RBP23.33■■□□□ 1.32
NUP54-205ENST00000507257 FAM135AQ9P2D6 1515 aa23.32■■□□□ 1.32
NUP54-205ENST00000507257 CENPQQ7L2Z9 268 aaPredicted RBP23.31■■□□□ 1.32
NUP54-205ENST00000507257 ZNF777Q9ULD5 760 aaPredicted RBP23.31■■□□□ 1.32
NUP54-205ENST00000507257 ABCA8O94911 1581 aa23.3■■□□□ 1.32
NUP54-205ENST00000507257 CLASP1Q7Z460 1538 aa23.3■■□□□ 1.32
NUP54-205ENST00000507257 KDM2AQ9Y2K7 1162 aa23.29■■□□□ 1.32
NUP54-205ENST00000507257 NUP160Q12769 1436 aa23.29■■□□□ 1.32
NUP54-205ENST00000507257 NFKBIBQ15653 356 aa23.28■■□□□ 1.32
NUP54-205ENST00000507257 MAGI1Q96QZ7 1491 aaPredicted RBP23.28■■□□□ 1.32
NUP54-205ENST00000507257 UNC13BO14795 1591 aa23.28■■□□□ 1.32
NUP54-205ENST00000507257 TSPY4P0CV99 314 aa23.27■■□□□ 1.32
NUP54-205ENST00000507257 TSPY10P0CW01 314 aa23.27■■□□□ 1.32
NUP54-205ENST00000507257 SYNJ2O15056 1496 aa23.27■■□□□ 1.32
NUP54-205ENST00000507257 CCDC144AA2RUR9 1427 aa23.27■■□□□ 1.32
NUP54-205ENST00000507257 CARMIL2Q6F5E8 1435 aa23.27■■□□□ 1.32
NUP54-205ENST00000507257 TESK2Q96S53 571 aa23.25■■□□□ 1.31
NUP54-205ENST00000507257 PLIN1O60240 522 aa23.25■■□□□ 1.31
NUP54-205ENST00000507257 FAM161AQ3B820 660 aa23.25■■□□□ 1.31
NUP54-205ENST00000507257 ERBINQ96RT1 1412 aa23.24■■□□□ 1.31
NUP54-205ENST00000507257 A2MP01023 1474 aa23.24■■□□□ 1.31
NUP54-205ENST00000507257 CCDC141Q6ZP82 1450 aa23.23■■□□□ 1.31
NUP54-205ENST00000507257 RNF17Q9BXT8 1623 aaKnown RBP23.22■■□□□ 1.31
NUP54-205ENST00000507257 MYO5CQ9NQX4 1742 aa23.22■■□□□ 1.31
NUP54-205ENST00000507257 MAST1Q9Y2H9 1570 aa23.22■■□□□ 1.31
NUP54-205ENST00000507257 DISP3Q9P2K9 1392 aa23.22■■□□□ 1.31
NUP54-205ENST00000507257 ATP10AO60312 1499 aa23.2■■□□□ 1.31
NUP54-205ENST00000507257 PLEKHD1A6NEE1 506 aa23.2■■□□□ 1.3
NUP54-205ENST00000507257 RSPH4AQ5TD94 716 aa23.2■■□□□ 1.3
NUP54-205ENST00000507257 VIRMAQ69YN4 1812 aaKnown RBP23.2■■□□□ 1.3
NUP54-205ENST00000507257 C8orf34Q49A92 452 aa23.2■■□□□ 1.3
NUP54-205ENST00000507257 DAXXQ9UER7 740 aaPredicted RBP23.2■■□□□ 1.3
NUP54-205ENST00000507257 ZNF521Q96K83 1311 aa23.19■■□□□ 1.3
NUP54-205ENST00000507257 EIF3AQ14152 1382 aaKnown RBP23.19■■□□□ 1.3
NUP54-205ENST00000507257 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.19■■□□□ 1.3
NUP54-205ENST00000507257 PLA2R1Q13018 1463 aa23.19■■□□□ 1.3
NUP54-205ENST00000507257 ATP10BO94823 1461 aa23.18■■□□□ 1.3
NUP54-205ENST00000507257 PANK3Q9H999 370 aa23.18■■□□□ 1.3
NUP54-205ENST00000507257 IQGAP3Q86VI3 1631 aa23.17■■□□□ 1.3
NUP54-205ENST00000507257 TMF1P82094 1093 aa23.17■■□□□ 1.3
NUP54-205ENST00000507257 DUSP27Q5VZP5 1158 aa23.17■■□□□ 1.3
NUP54-205ENST00000507257 PREX2Q70Z35 1606 aa23.16■■□□□ 1.3
NUP54-205ENST00000507257 RTN4Q9NQC3 1192 aaKnown RBP23.16■■□□□ 1.3
NUP54-205ENST00000507257 NBPF1Q3BBV0 1214 aa23.15■■□□□ 1.3
NUP54-205ENST00000507257 CC2D1BQ5T0F9 858 aaKnown RBP23.15■■□□□ 1.3
NUP54-205ENST00000507257 C20orf194Q5TEA3 1177 aa23.15■■□□□ 1.3
NUP54-205ENST00000507257 SAMD9LQ8IVG5 1584 aa23.15■■□□□ 1.3
NUP54-205ENST00000507257 FRAT1Q92837 279 aaPredicted RBP23.14■■□□□ 1.29
NUP54-205ENST00000507257 PLEKHH1Q9ULM0 1364 aa23.12■■□□□ 1.29
NUP54-205ENST00000507257 BRPF3Q9ULD4 1205 aa23.12■■□□□ 1.29
NUP54-205ENST00000507257 WDR7Q9Y4E6 1490 aa23.12■■□□□ 1.29
NUP54-205ENST00000507257 PIK3C2GO75747 1445 aa23.12■■□□□ 1.29
NUP54-205ENST00000507257 CDC42BPBQ9Y5S2 1711 aa23.12■■□□□ 1.29
NUP54-205ENST00000507257 ADAMTS8Q9UP79 889 aa23.12■■□□□ 1.29
NUP54-205ENST00000507257 SYNMO15061 1565 aa23.11■■□□□ 1.29
NUP54-205ENST00000507257 PLXNC1O60486 1568 aa23.11■■□□□ 1.29
NUP54-205ENST00000507257 SKAP1Q86WV1 359 aa23.11■■□□□ 1.29
NUP54-205ENST00000507257 GOLGA2Q08379 1002 aa23.1■■□□□ 1.29
NUP54-205ENST00000507257 NPC1L1Q9UHC9 1359 aa23.09■■□□□ 1.29
NUP54-205ENST00000507257 MAGI2Q86UL8 1455 aa23.09■■□□□ 1.29
NUP54-205ENST00000507257 TRMT2AQ8IZ69 625 aaKnown RBP23.09■■□□□ 1.29
NUP54-205ENST00000507257 ABCC2Q92887 1545 aa23.09■■□□□ 1.29
NUP54-205ENST00000507257 IQGAP1P46940 1657 aa23.09■■□□□ 1.29
NUP54-205ENST00000507257 HNRNPMP52272 730 aaKnown RBP eCLIP23.06■■□□□ 1.281e-7■■■■□ 25.9
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms