RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 NFKBIBQ15653 356 aa22.6■■□□□ 1.21
SQSTM1-211ENST00000506690 DISP1Q96F81 1524 aa22.59■■□□□ 1.21
SQSTM1-211ENST00000506690 ADGBQ8N7X0 1667 aa22.57■■□□□ 1.2
SQSTM1-211ENST00000506690 KIAA0556O60303 1618 aa22.56■■□□□ 1.2
SQSTM1-211ENST00000506690 ARHGEF12Q9NZN5 1544 aa22.55■■□□□ 1.2
SQSTM1-211ENST00000506690 NLRP13Q86W25 1043 aa22.55■■□□□ 1.2
SQSTM1-211ENST00000506690 UBE2Q2Q8WVN8 375 aa22.55■■□□□ 1.2
SQSTM1-211ENST00000506690 CARD11Q9BXL7 1154 aa22.55■■□□□ 1.2
SQSTM1-211ENST00000506690 PARD3Q8TEW0 1356 aa22.54■■□□□ 1.2
SQSTM1-211ENST00000506690 CDCA7LQ96GN5 454 aa22.53■■□□□ 1.2
SQSTM1-211ENST00000506690 PKD2Q13563 968 aa22.52■■□□□ 1.2
SQSTM1-211ENST00000506690 FRAT1Q92837 279 aaPredicted RBP22.52■■□□□ 1.2
SQSTM1-211ENST00000506690 ADGRL2O95490 1459 aa22.52■■□□□ 1.19
SQSTM1-211ENST00000506690 INSRP06213 1382 aa22.51■■□□□ 1.19
SQSTM1-211ENST00000506690 ST20-MTHFSA0A0A6YYL1 179 aa22.51■■□□□ 1.19
SQSTM1-211ENST00000506690 JPH4Q96JJ6 628 aa22.51■■□□□ 1.19
SQSTM1-211ENST00000506690 SKAP1Q86WV1 359 aa22.51■■□□□ 1.19
SQSTM1-211ENST00000506690 CRBNQ96SW2 442 aa22.51■■□□□ 1.19
SQSTM1-211ENST00000506690 PLIN1O60240 522 aa22.5■■□□□ 1.19
SQSTM1-211ENST00000506690 ZMYM4Q5VZL5 1548 aa22.5■■□□□ 1.19
SQSTM1-211ENST00000506690 CAMSAP2Q08AD1 1489 aa22.48■■□□□ 1.19
SQSTM1-211ENST00000506690 KDM2BQ8NHM5 1336 aa22.48■■□□□ 1.19
SQSTM1-211ENST00000506690 BLMP54132 1417 aaPredicted RBP22.47■■□□□ 1.19
SQSTM1-211ENST00000506690 CROCC2H7BZ55 1655 aa22.47■■□□□ 1.19
SQSTM1-211ENST00000506690 SLC4A3P48751 1232 aa22.45■■□□□ 1.18
SQSTM1-211ENST00000506690 CARMIL2Q6F5E8 1435 aa22.44■■□□□ 1.18
SQSTM1-211ENST00000506690 NUP153P49790 1475 aaKnown RBP22.44■■□□□ 1.18
SQSTM1-211ENST00000506690 DAXXQ9UER7 740 aaPredicted RBP22.42■■□□□ 1.18
SQSTM1-211ENST00000506690 PLEKHH2Q8IVE3 1493 aa22.42■■□□□ 1.18
SQSTM1-211ENST00000506690 ITSN2Q9NZM3 1697 aa22.42■■□□□ 1.18
SQSTM1-211ENST00000506690 CHD1O14646 1710 aa22.42■■□□□ 1.18
SQSTM1-211ENST00000506690 PER1O15534 1290 aaPredicted RBP22.41■■□□□ 1.18
SQSTM1-211ENST00000506690 RAPGEF6Q8TEU7 1601 aa22.41■■□□□ 1.18
SQSTM1-211ENST00000506690 FAM161AQ3B820 660 aa22.4■■□□□ 1.18
SQSTM1-211ENST00000506690 C8orf34Q49A92 452 aa22.4■■□□□ 1.18
SQSTM1-211ENST00000506690 CENPQQ7L2Z9 268 aaPredicted RBP22.4■■□□□ 1.18
SQSTM1-211ENST00000506690 ANKRD50Q9ULJ7 1429 aa22.39■■□□□ 1.17
SQSTM1-211ENST00000506690 ANKRD30AQ9BXX3 1397 aa22.39■■□□□ 1.17
SQSTM1-211ENST00000506690 C20orf194Q5TEA3 1177 aa22.38■■□□□ 1.17
SQSTM1-211ENST00000506690 PLB1Q6P1J6 1458 aa22.37■■□□□ 1.17
SQSTM1-211ENST00000506690 CFDP1Q9UEE9 299 aaPredicted RBP22.37■■□□□ 1.17
SQSTM1-211ENST00000506690 KDM5DQ9BY66 1539 aa22.36■■□□□ 1.17
SQSTM1-211ENST00000506690 GPATCH8Q9UKJ3 1502 aaKnown RBP22.36■■□□□ 1.17
SQSTM1-211ENST00000506690 FAM43AQ8N2R8 423 aa22.36■■□□□ 1.17
SQSTM1-211ENST00000506690 FRAT2O75474 233 aaPredicted RBP22.35■■□□□ 1.17
SQSTM1-211ENST00000506690 TROQ12816 1431 aaPredicted RBP22.35■■□□□ 1.17
SQSTM1-211ENST00000506690 KDM2AQ9Y2K7 1162 aa22.34■■□□□ 1.17
SQSTM1-211ENST00000506690 RSPH6AQ9H0K4 717 aa22.33■■□□□ 1.17
SQSTM1-211ENST00000506690 NUP155O75694 1391 aa22.33■■□□□ 1.17
SQSTM1-211ENST00000506690 DCAF11Q8TEB1 546 aa22.32■■□□□ 1.16
SQSTM1-211ENST00000506690 TRPM1Q7Z4N2 1603 aa22.32■■□□□ 1.16
SQSTM1-211ENST00000506690 EIF5BO60841 1220 aaKnown RBP22.32■■□□□ 1.16
SQSTM1-211ENST00000506690 PRG4Q92954 1404 aaPredicted RBP22.32■■□□□ 1.16
SQSTM1-211ENST00000506690 ADCY10Q96PN6 1610 aa22.31■■□□□ 1.16
SQSTM1-211ENST00000506690 COL17A1Q9UMD9 1497 aaPredicted RBP22.28■■□□□ 1.16
SQSTM1-211ENST00000506690 PTPRGP23470 1445 aa22.27■■□□□ 1.16
SQSTM1-211ENST00000506690 PRAG1Q86YV5 1406 aa22.27■■□□□ 1.15
SQSTM1-211ENST00000506690 SHANK2Q9UPX8 1470 aa22.26■■□□□ 1.15
SQSTM1-211ENST00000506690 CC2D1BQ5T0F9 858 aaKnown RBP22.26■■□□□ 1.15
SQSTM1-211ENST00000506690 VIRMAQ69YN4 1812 aaKnown RBP22.24■■□□□ 1.15
SQSTM1-211ENST00000506690 DUSP27Q5VZP5 1158 aa22.24■■□□□ 1.15
SQSTM1-211ENST00000506690 ZNF777Q9ULD5 760 aaPredicted RBP22.24■■□□□ 1.15
SQSTM1-211ENST00000506690 SHROOM2Q13796 1616 aa22.24■■□□□ 1.15
SQSTM1-211ENST00000506690 GPRASP1Q5JY77 1395 aa22.24■■□□□ 1.15
SQSTM1-211ENST00000506690 LAMC1P11047 1609 aa22.23■■□□□ 1.15
SQSTM1-211ENST00000506690 CDC42BPAQ5VT25 1732 aa22.23■■□□□ 1.15
SQSTM1-211ENST00000506690 ABCA8O94911 1581 aa22.22■■□□□ 1.15
SQSTM1-211ENST00000506690 C9orf84Q5VXU9 1444 aa22.21■■□□□ 1.15
SQSTM1-211ENST00000506690 DISP3Q9P2K9 1392 aa22.21■■□□□ 1.15
SQSTM1-211ENST00000506690 PLEKHH1Q9ULM0 1364 aa22.21■■□□□ 1.15
SQSTM1-211ENST00000506690 ADAMTS8Q9UP79 889 aa22.2■■□□□ 1.14
SQSTM1-211ENST00000506690 ZNF521Q96K83 1311 aa22.2■■□□□ 1.14
SQSTM1-211ENST00000506690 PRDM15P57071 1507 aaPredicted RBP22.2■■□□□ 1.14
SQSTM1-211ENST00000506690 TESK2Q96S53 571 aa22.2■■□□□ 1.14
SQSTM1-211ENST00000506690 PLEKHD1A6NEE1 506 aa22.19■■□□□ 1.14
SQSTM1-211ENST00000506690 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.19■■□□□ 1.14
SQSTM1-211ENST00000506690 PANK3Q9H999 370 aa22.19■■□□□ 1.14
SQSTM1-211ENST00000506690 RGS3P49796 1198 aa22.18■■□□□ 1.14
SQSTM1-211ENST00000506690 NBPF1Q3BBV0 1214 aa22.17■■□□□ 1.14
SQSTM1-211ENST00000506690 USP19O94966 1318 aa22.17■■□□□ 1.14
SQSTM1-211ENST00000506690 CLASP1Q7Z460 1538 aa22.15■■□□□ 1.14
SQSTM1-211ENST00000506690 ATP10BO94823 1461 aa22.15■■□□□ 1.14
SQSTM1-211ENST00000506690 EIF3AQ14152 1382 aaKnown RBP22.15■■□□□ 1.14
SQSTM1-211ENST00000506690 ERBINQ96RT1 1412 aa22.14■■□□□ 1.14
SQSTM1-211ENST00000506690 GOLGA2Q08379 1002 aa22.14■■□□□ 1.13
SQSTM1-211ENST00000506690 POGKQ9P215 609 aa22.14■■□□□ 1.13
SQSTM1-211ENST00000506690 FAM135AQ9P2D6 1515 aa22.12■■□□□ 1.13
SQSTM1-211ENST00000506690 ABCC10Q5T3U5 1492 aa22.1■■□□□ 1.13
SQSTM1-211ENST00000506690 CCDC144AA2RUR9 1427 aa22.1■■□□□ 1.13
SQSTM1-211ENST00000506690 SLFN5Q08AF3 891 aa22.1■■□□□ 1.13
SQSTM1-211ENST00000506690 TRMT2AQ8IZ69 625 aaKnown RBP22.1■■□□□ 1.13
SQSTM1-211ENST00000506690 A2MP01023 1474 aa22.1■■□□□ 1.13
SQSTM1-211ENST00000506690 RRAGDQ9NQL2 400 aaPredicted RBP22.09■■□□□ 1.13
SQSTM1-211ENST00000506690 TMF1P82094 1093 aa22.08■■□□□ 1.12
SQSTM1-211ENST00000506690 ERCC6L2Q5T890 1561 aa22.08■■□□□ 1.12
SQSTM1-211ENST00000506690 WDR43Q15061 677 aaKnown RBP eCLIP22.07■■□□□ 1.12
SQSTM1-211ENST00000506690 L1TD1Q5T7N2 865 aaKnown RBP22.07■■□□□ 1.12
SQSTM1-211ENST00000506690 EIF2AK4Q9P2K8 1649 aaKnown RBP22.07■■□□□ 1.12
SQSTM1-211ENST00000506690 PPP2R1AP30153 589 aa22.07■■□□□ 1.12
SQSTM1-211ENST00000506690 TSPY4P0CV99 314 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms