RNA–Protein interactions for RNA: ENST00000506515.1

HERC4-213, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 4

Gene HERC4, Length 540 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-213ENST00000506515 ZNF454Q8N9F8 522 aa12.48□□□□□ -0.41
HERC4-213ENST00000506515 ZSWIM6Q9HCJ5 1215 aa12.48□□□□□ -0.41
HERC4-213ENST00000506515 FOSBP53539 338 aa12.47□□□□□ -0.41
HERC4-213ENST00000506515 FBXW7Q969H0 707 aa12.47□□□□□ -0.41
HERC4-213ENST00000506515 NPDC1Q9NQX5 325 aaPredicted RBP12.46□□□□□ -0.41
HERC4-213ENST00000506515 ZDHHC16Q969W1 377 aa12.44□□□□□ -0.42
HERC4-213ENST00000506515 KDM4CQ9H3R0 1056 aa12.42□□□□□ -0.42
HERC4-213ENST00000506515 GTF3C3Q9Y5Q9 886 aa12.42□□□□□ -0.42
HERC4-213ENST00000506515 C6orf132Q5T0Z8 1188 aa12.41□□□□□ -0.42
HERC4-213ENST00000506515 LHX6Q9UPM6 363 aa12.41□□□□□ -0.42
HERC4-213ENST00000506515 SNPHO15079 494 aa12.4□□□□□ -0.42
HERC4-213ENST00000506515 ADAM33Q9BZ11 813 aa12.39□□□□□ -0.43
HERC4-213ENST00000506515 OTUD5Q96G74 571 aa12.37□□□□□ -0.43
HERC4-213ENST00000506515 AMHR2Q16671 573 aa12.36□□□□□ -0.43
HERC4-213ENST00000506515 IL27Q8NEV9 243 aa12.36□□□□□ -0.43
HERC4-213ENST00000506515 PLSCR2Q9NRY7 297 aa12.35□□□□□ -0.43
HERC4-213ENST00000506515 TTLL12Q14166 644 aaPredicted RBP12.34□□□□□ -0.43
HERC4-213ENST00000506515 PPP4R3BQ5MIZ7 849 aa12.34□□□□□ -0.43
HERC4-213ENST00000506515 CERKQ8TCT0 537 aa12.34□□□□□ -0.43
HERC4-213ENST00000506515 HOXB1P14653 301 aaPredicted RBP12.33□□□□□ -0.44
HERC4-213ENST00000506515 PADI6Q6TGC4 694 aa12.33□□□□□ -0.44
HERC4-213ENST00000506515 PARP9Q8IXQ6 854 aa12.33□□□□□ -0.44
HERC4-213ENST00000506515 FAM161AQ3B820 660 aa12.32□□□□□ -0.44
HERC4-213ENST00000506515 PSDA5PKW4 1024 aaPredicted RBP12.31□□□□□ -0.44
HERC4-213ENST00000506515 FAM117AQ9C073 453 aa12.29□□□□□ -0.44
HERC4-213ENST00000506515 DAXXQ9UER7 740 aaPredicted RBP12.28□□□□□ -0.44
HERC4-213ENST00000506515 COL9A1P20849 921 aa12.27□□□□□ -0.45
HERC4-213ENST00000506515 PRSS12P56730 875 aa12.27□□□□□ -0.45
HERC4-213ENST00000506515 CDCA7LQ96GN5 454 aa12.27□□□□□ -0.45
HERC4-213ENST00000506515 PHOX2BQ99453 314 aa12.27□□□□□ -0.45
HERC4-213ENST00000506515 BCL2L12Q9HB09 334 aa12.27□□□□□ -0.45
HERC4-213ENST00000506515 OATP04181 439 aa12.25□□□□□ -0.45
HERC4-213ENST00000506515 PTPREP23469 700 aa12.25□□□□□ -0.45
HERC4-213ENST00000506515 GIGYF2Q6Y7W6 1299 aaKnown RBP12.25□□□□□ -0.45
HERC4-213ENST00000506515 REPIN1Q9BWE0 567 aaKnown RBP12.25□□□□□ -0.45
HERC4-213ENST00000506515 RBM27Q9P2N5 1060 aaKnown RBP12.25□□□□□ -0.45
HERC4-213ENST00000506515 ADGRG1Q9Y653 693 aa12.25□□□□□ -0.45
HERC4-213ENST00000506515 MDM2Q00987 491 aaPredicted RBP12.24□□□□□ -0.45
HERC4-213ENST00000506515 METTL3Q86U44 580 aaKnown RBP12.24□□□□□ -0.45
HERC4-213ENST00000506515 TTC13Q8NBP0 860 aa12.23□□□□□ -0.45
HERC4-213ENST00000506515 NLRP7Q8WX94 980 aa12.23□□□□□ -0.45
HERC4-213ENST00000506515 CLCN1P35523 988 aa12.22□□□□□ -0.45
HERC4-213ENST00000506515 DDRGK1Q96HY6 314 aa12.22□□□□□ -0.45
HERC4-213ENST00000506515 PPP1R3GB7ZBB8 358 aa12.21□□□□□ -0.45
HERC4-213ENST00000506515 PXYLP1Q8TE99 480 aa12.21□□□□□ -0.45
HERC4-213ENST00000506515 GPCPD1Q9NPB8 672 aa12.21□□□□□ -0.45
HERC4-213ENST00000506515 PLEKHG3A1L390 1219 aa12.2□□□□□ -0.46
HERC4-213ENST00000506515 MS4A1P11836 297 aa12.2□□□□□ -0.46
HERC4-213ENST00000506515 FAM198AQ9UFP1 575 aa12.2□□□□□ -0.46
HERC4-213ENST00000506515 TIMELESSQ9UNS1 1208 aa12.2□□□□□ -0.46
HERC4-213ENST00000506515 KCNK17Q96T54 332 aa12.19□□□□□ -0.46
HERC4-213ENST00000506515 RBM46Q8TBY0 533 aaKnown RBP12.18□□□□□ -0.46
HERC4-213ENST00000506515 TMUB1Q9BVT8 246 aa12.18□□□□□ -0.46
HERC4-213ENST00000506515 TSKSQ9UJT2 592 aa12.18□□□□□ -0.46
HERC4-213ENST00000506515 ERBB3P21860 1342 aa12.16□□□□□ -0.46
HERC4-213ENST00000506515 SSTR3P32745 418 aaPredicted RBP12.15□□□□□ -0.46
HERC4-213ENST00000506515 VARS2Q5ST30 1063 aaKnown RBP12.15□□□□□ -0.46
HERC4-213ENST00000506515 KCNH8Q96L42 1107 aa12.15□□□□□ -0.46
HERC4-213ENST00000506515 TRIM6-TRIM34B2RNG4 842 aa12.14□□□□□ -0.47
HERC4-213ENST00000506515 ST18O60284 1047 aa12.14□□□□□ -0.47
HERC4-213ENST00000506515 PROX2Q3B8N5 592 aa12.14□□□□□ -0.47
HERC4-213ENST00000506515 NUDT18Q6ZVK8 323 aa12.14□□□□□ -0.47
HERC4-213ENST00000506515 C3orf80F5H4A9 247 aa12.12□□□□□ -0.47
HERC4-213ENST00000506515 PSEN2P49810 448 aa12.12□□□□□ -0.47
HERC4-213ENST00000506515 PACS2Q86VP3 889 aa12.12□□□□□ -0.47
HERC4-213ENST00000506515 FAM217BQ9NTX9 383 aaPredicted RBP12.12□□□□□ -0.47
HERC4-213ENST00000506515 PNMA3Q9UL41 463 aa12.12□□□□□ -0.47
HERC4-213ENST00000506515 RCCD1A6NED2 376 aa12.11□□□□□ -0.47
HERC4-213ENST00000506515 NBPF26B4DH59 902 aa12.11□□□□□ -0.47
HERC4-213ENST00000506515 EMP3P54852 163 aa12.11□□□□□ -0.47
HERC4-213ENST00000506515 MARVELD3Q96A59 401 aa12.11□□□□□ -0.47
HERC4-213ENST00000506515 EYA1Q99502 592 aa12.11□□□□□ -0.47
HERC4-213ENST00000506515 C14orf37Q86TY3 774 aa12.1□□□□□ -0.47
HERC4-213ENST00000506515 TATDN2Q93075 761 aa12.1□□□□□ -0.47
HERC4-213ENST00000506515 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.09□□□□□ -0.47
HERC4-213ENST00000506515 SMAPO00193 183 aa12.09□□□□□ -0.47
HERC4-213ENST00000506515 BEGAINQ9BUH8 593 aa12.09□□□□□ -0.47
HERC4-213ENST00000506515 ERICH6Q7L0X2 663 aa12.08□□□□□ -0.48
HERC4-213ENST00000506515 AXIN2Q9Y2T1 843 aa12.08□□□□□ -0.48
HERC4-213ENST00000506515 FAM163AQ96GL9 167 aaPredicted RBP12.07□□□□□ -0.48
HERC4-213ENST00000506515 ZBED2Q9BTP6 218 aa12.07□□□□□ -0.48
HERC4-213ENST00000506515 FAM205CA6NFA0 338 aa12.06□□□□□ -0.48
HERC4-213ENST00000506515 ARHGAP33O14559 1287 aa12.06□□□□□ -0.48
HERC4-213ENST00000506515 KIAA1468Q9P260 1216 aa12.06□□□□□ -0.48
HERC4-213ENST00000506515 DNAJB2P25686 324 aa12.05□□□□□ -0.48
HERC4-213ENST00000506515 POTEEQ6S8J3 1075 aa12.05□□□□□ -0.48
HERC4-213ENST00000506515 ONECUT3O60422 494 aaPredicted RBP12.04□□□□□ -0.48
HERC4-213ENST00000506515 DMRTA1Q5VZB9 504 aa12.03□□□□□ -0.48
HERC4-213ENST00000506515 GOPCQ9HD26 462 aa12.03□□□□□ -0.48
HERC4-213ENST00000506515 PCMTD1Q96MG8 357 aaPredicted RBP12.02□□□□□ -0.49
HERC4-213ENST00000506515 RSPH6AQ9H0K4 717 aa12.01□□□□□ -0.49
HERC4-213ENST00000506515 ATP1B4Q9UN42 357 aaPredicted RBP12.01□□□□□ -0.49
HERC4-213ENST00000506515 POTEMA6NI47 508 aa12□□□□□ -0.49
HERC4-213ENST00000506515 DDX11L8A8MPP1 907 aa12□□□□□ -0.49
HERC4-213ENST00000506515 SH3D19Q5HYK7 790 aa12□□□□□ -0.49
HERC4-213ENST00000506515 ZNF687Q8N1G0 1237 aa12□□□□□ -0.49
HERC4-213ENST00000506515 TMEM134Q9H6X4 195 aa12□□□□□ -0.49
HERC4-213ENST00000506515 PBX2P40425 430 aa11.99□□□□□ -0.49
HERC4-213ENST00000506515 SEPT9Q9UHD8 586 aaPredicted RBP11.99□□□□□ -0.49
HERC4-213ENST00000506515 RABGEF1Q9UJ41 708 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms