RNA–Protein interactions for RNA: ENST00000505054.2

SYNE4-207, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

TSL 3

Gene SYNE4, Length 713 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-207ENST00000505054 FAM135AQ9P2D6 1515 aa26.18■■□□□ 1.78
SYNE4-207ENST00000505054 NCKAP5LQ9HCH0 1330 aa26.16■■□□□ 1.78
SYNE4-207ENST00000505054 PKD2Q13563 968 aa26.16■■□□□ 1.78
SYNE4-207ENST00000505054 CCDC141Q6ZP82 1450 aa26.16■■□□□ 1.78
SYNE4-207ENST00000505054 POLR1AO95602 1720 aaPredicted RBP26.15■■□□□ 1.78
SYNE4-207ENST00000505054 A2ML1A8K2U0 1454 aa26.15■■□□□ 1.78
SYNE4-207ENST00000505054 DNMT1P26358 1616 aaKnown RBP26.14■■□□□ 1.78
SYNE4-207ENST00000505054 KDM5DQ9BY66 1539 aa26.14■■□□□ 1.77
SYNE4-207ENST00000505054 DHX29Q7Z478 1369 aaKnown RBP26.13■■□□□ 1.77
SYNE4-207ENST00000505054 PPARGC1BQ86YN6 1023 aaKnown RBP26.13■■□□□ 1.77
SYNE4-207ENST00000505054 FGD6Q6ZV73 1430 aa26.13■■□□□ 1.77
SYNE4-207ENST00000505054 ZNF335Q9H4Z2 1342 aaPredicted RBP26.12■■□□□ 1.77
SYNE4-207ENST00000505054 PTPN23Q9H3S7 1636 aa26.09■■□□□ 1.77
SYNE4-207ENST00000505054 PZPP20742 1482 aa26.08■■□□□ 1.77
SYNE4-207ENST00000505054 ARHGEF5Q12774 1597 aa26.07■■□□□ 1.76
SYNE4-207ENST00000505054 ILDR2Q71H61 639 aa26.07■■□□□ 1.76
SYNE4-207ENST00000505054 NEURL4Q96JN8 1562 aa26.05■■□□□ 1.76
SYNE4-207ENST00000505054 TNRQ92752 1358 aa26.04■■□□□ 1.76
SYNE4-207ENST00000505054 KIF3BO15066 747 aa26.01■■□□□ 1.75
SYNE4-207ENST00000505054 RSPH4AQ5TD94 716 aa26.01■■□□□ 1.75
SYNE4-207ENST00000505054 UBAP1LF5GYI3 381 aa25.99■■□□□ 1.75
SYNE4-207ENST00000505054 SOCS7O14512 581 aa25.99■■□□□ 1.75
SYNE4-207ENST00000505054 ZC3H13Q5T200 1668 aaKnown RBP25.99■■□□□ 1.75
SYNE4-207ENST00000505054 RNF17Q9BXT8 1623 aaKnown RBP25.99■■□□□ 1.75
SYNE4-207ENST00000505054 CPS1P31327 1500 aa25.98■■□□□ 1.75
SYNE4-207ENST00000505054 MAST1Q9Y2H9 1570 aa25.97■■□□□ 1.75
SYNE4-207ENST00000505054 NLRP1Q9C000 1473 aa25.97■■□□□ 1.75
SYNE4-207ENST00000505054 ABCC5O15440 1437 aa25.95■■□□□ 1.74
SYNE4-207ENST00000505054 EIF2AK4Q9P2K8 1649 aaKnown RBP25.95■■□□□ 1.74
SYNE4-207ENST00000505054 FBXO31Q5XUX0 539 aaPredicted RBP25.94■■□□□ 1.74
SYNE4-207ENST00000505054 DEPDC5O75140 1603 aa25.94■■□□□ 1.74
SYNE4-207ENST00000505054 WASHC2CQ9Y4E1 1318 aa25.93■■□□□ 1.74
SYNE4-207ENST00000505054 UGGT1Q9NYU2 1555 aa25.93■■□□□ 1.74
SYNE4-207ENST00000505054 DAPK1P53355 1430 aa25.92■■□□□ 1.74
SYNE4-207ENST00000505054 CROCC2H7BZ55 1655 aa25.91■■□□□ 1.74
SYNE4-207ENST00000505054 TSPY4P0CV99 314 aa25.91■■□□□ 1.74
SYNE4-207ENST00000505054 TSPY10P0CW01 314 aa25.91■■□□□ 1.74
SYNE4-207ENST00000505054 SHANK2Q9UPX8 1470 aa25.91■■□□□ 1.74
SYNE4-207ENST00000505054 FAM50AQ14320 339 aaKnown RBP25.9■■□□□ 1.74
SYNE4-207ENST00000505054 ABCC3O15438 1527 aa25.89■■□□□ 1.74
SYNE4-207ENST00000505054 VWDEQ8N2E2 1590 aa25.89■■□□□ 1.73
SYNE4-207ENST00000505054 IQGAP1P46940 1657 aa25.88■■□□□ 1.73
SYNE4-207ENST00000505054 MED14O60244 1454 aa25.88■■□□□ 1.73
SYNE4-207ENST00000505054 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.87■■□□□ 1.73
SYNE4-207ENST00000505054 MROH1Q8NDA8 1641 aa25.86■■□□□ 1.73
SYNE4-207ENST00000505054 RRBP1Q9P2E9 1410 aaKnown RBP25.86■■□□□ 1.73
SYNE4-207ENST00000505054 CEP152O94986 1710 aa25.85■■□□□ 1.73
SYNE4-207ENST00000505054 NPHP4O75161 1426 aaPredicted RBP25.84■■□□□ 1.73
SYNE4-207ENST00000505054 ANKLE2Q86XL3 938 aa25.84■■□□□ 1.73
SYNE4-207ENST00000505054 THEMISQ8N1K5 641 aaPredicted RBP25.83■■□□□ 1.73
SYNE4-207ENST00000505054 ERVK-7P63135 1459 aa25.82■■□□□ 1.72
SYNE4-207ENST00000505054 SYNMO15061 1565 aa25.79■■□□□ 1.72
SYNE4-207ENST00000505054 DUOX2Q9NRD8 1548 aa25.78■■□□□ 1.72
SYNE4-207ENST00000505054 MED1Q15648 1581 aaPredicted RBP25.78■■□□□ 1.72
SYNE4-207ENST00000505054 UBR1Q8IWV7 1749 aa25.78■■□□□ 1.72
SYNE4-207ENST00000505054 TOM1O60784 492 aa25.78■■□□□ 1.72
SYNE4-207ENST00000505054 STRCP1A6NGW2 1772 aa25.77■■□□□ 1.72
SYNE4-207ENST00000505054 CHIC2Q9UKJ5 165 aa25.76■■□□□ 1.71
SYNE4-207ENST00000505054 SCAF1Q9H7N4 1312 aaKnown RBP25.76■■□□□ 1.71
SYNE4-207ENST00000505054 ADGRL2O95490 1459 aa25.76■■□□□ 1.71
SYNE4-207ENST00000505054 ALKQ9UM73 1620 aa25.75■■□□□ 1.71
SYNE4-207ENST00000505054 PRDM15P57071 1507 aaPredicted RBP25.75■■□□□ 1.71
SYNE4-207ENST00000505054 KIF15Q9NS87 1388 aa25.75■■□□□ 1.71
SYNE4-207ENST00000505054 CFAP65Q6ZU64 1925 aaKnown RBP25.74■■□□□ 1.71
SYNE4-207ENST00000505054 ANKRD30AQ9BXX3 1397 aa25.73■■□□□ 1.71
SYNE4-207ENST00000505054 HSPA1LP34931 641 aa25.73■■□□□ 1.71
SYNE4-207ENST00000505054 PIP4K2BP78356 416 aa25.73■■□□□ 1.71
SYNE4-207ENST00000505054 RRP7BPQ9NSQ0 103 aa25.71■■□□□ 1.71
SYNE4-207ENST00000505054 ERBINQ96RT1 1412 aa25.69■■□□□ 1.7
SYNE4-207ENST00000505054 ITGAEP38570 1179 aa25.68■■□□□ 1.7
SYNE4-207ENST00000505054 LRRC7Q96NW7 1537 aa25.68■■□□□ 1.7
SYNE4-207ENST00000505054 SCAF11Q99590 1463 aaKnown RBP25.67■■□□□ 1.7
SYNE4-207ENST00000505054 ARHGAP31Q2M1Z3 1444 aa25.66■■□□□ 1.7
SYNE4-207ENST00000505054 SLIT1O75093 1534 aa25.66■■□□□ 1.7
SYNE4-207ENST00000505054 ROCK1Q13464 1354 aa25.65■■□□□ 1.7
SYNE4-207ENST00000505054 ARHGAP23Q9P227 1491 aa25.65■■□□□ 1.7
SYNE4-207ENST00000505054 PIK3C2BO00750 1634 aa25.61■■□□□ 1.69
SYNE4-207ENST00000505054 KDM5AP29375 1690 aaKnown RBP25.6■■□□□ 1.69
SYNE4-207ENST00000505054 XIRP1Q702N8 1843 aaKnown RBP25.58■■□□□ 1.69
SYNE4-207ENST00000505054 ANKRD50Q9ULJ7 1429 aa25.57■■□□□ 1.68
SYNE4-207ENST00000505054 LMTK2Q8IWU2 1503 aa25.55■■□□□ 1.68
SYNE4-207ENST00000505054 KANK1Q14678 1352 aa25.53■■□□□ 1.68
SYNE4-207ENST00000505054 LTKP29376 864 aa25.51■■□□□ 1.67
SYNE4-207ENST00000505054 EFCAB6Q5THR3 1501 aa25.51■■□□□ 1.67
SYNE4-207ENST00000505054 TXNDC2Q86VQ3 553 aa25.5■■□□□ 1.67
SYNE4-207ENST00000505054 TMEM2Q9UHN6 1383 aa25.49■■□□□ 1.67
SYNE4-207ENST00000505054 PHF23Q9BUL5 403 aaPredicted RBP25.48■■□□□ 1.67
SYNE4-207ENST00000505054 EID1Q9Y6B2 187 aa25.48■■□□□ 1.67
SYNE4-207ENST00000505054 NAIPQ13075 1403 aa25.47■■□□□ 1.67
SYNE4-207ENST00000505054 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.46■■□□□ 1.67
SYNE4-207ENST00000505054 ADGRB3O60242 1522 aa25.46■■□□□ 1.67
SYNE4-207ENST00000505054 GCC2Q8IWJ2 1684 aa25.45■■□□□ 1.66
SYNE4-207ENST00000505054 HFM1A2PYH4 1435 aa25.45■■□□□ 1.66
SYNE4-207ENST00000505054 UNC13BO14795 1591 aa25.44■■□□□ 1.66
SYNE4-207ENST00000505054 STAG3Q9UJ98 1225 aa25.42■■□□□ 1.66
SYNE4-207ENST00000505054 NOS1P29475 1434 aa25.41■■□□□ 1.66
SYNE4-207ENST00000505054 SENP3Q9H4L4 574 aaPredicted RBP25.41■■□□□ 1.66
SYNE4-207ENST00000505054 TET3O43151 1660 aa25.41■■□□□ 1.66
SYNE4-207ENST00000505054 NWD1Q149M9 1564 aa25.4■■□□□ 1.66
SYNE4-207ENST00000505054 NKTRP30414 1462 aaKnown RBP25.36■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms