RNA–Protein interactions for RNA: ENST00000504044.1

NFKB1-204, Transcript of nuclear factor kappa B subunit 1, humanhuman

TSL 2

Gene NFKB1, Length 580 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1-204ENST00000504044 DNMT1P26358 1616 aaKnown RBP27.54■■■□□ 2
NFKB1-204ENST00000504044 KDM5DQ9BY66 1539 aa27.52■■■□□ 2
NFKB1-204ENST00000504044 RRP7BPQ9NSQ0 103 aa27.52■■■□□ 2
NFKB1-204ENST00000504044 CLTCQ00610 1675 aaKnown RBP27.52■■■□□ 2
NFKB1-204ENST00000504044 SETD1BQ9UPS6 1966 aaKnown RBP27.51■■■□□ 2
NFKB1-204ENST00000504044 ERBINQ96RT1 1412 aa27.5■■□□□ 1.99
NFKB1-204ENST00000504044 EIF2AK4Q9P2K8 1649 aaKnown RBP27.49■■□□□ 1.99
NFKB1-204ENST00000504044 CROCC2H7BZ55 1655 aa27.49■■□□□ 1.99
NFKB1-204ENST00000504044 CHIC2Q9UKJ5 165 aa27.48■■□□□ 1.99
NFKB1-204ENST00000504044 DMRT2Q9Y5R5 561 aa27.46■■□□□ 1.99
NFKB1-204ENST00000504044 PTPRKQ15262 1439 aa27.46■■□□□ 1.99
NFKB1-204ENST00000504044 RNF17Q9BXT8 1623 aaKnown RBP27.42■■□□□ 1.98
NFKB1-204ENST00000504044 NCOA1Q15788 1441 aa27.41■■□□□ 1.98
NFKB1-204ENST00000504044 PZPP20742 1482 aa27.41■■□□□ 1.98
NFKB1-204ENST00000504044 KANK1Q14678 1352 aa27.41■■□□□ 1.98
NFKB1-204ENST00000504044 ADGRL2O95490 1459 aa27.4■■□□□ 1.98
NFKB1-204ENST00000504044 PPARGC1BQ86YN6 1023 aaKnown RBP27.4■■□□□ 1.98
NFKB1-204ENST00000504044 TNRQ92752 1358 aa27.37■■□□□ 1.97
NFKB1-204ENST00000504044 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.37■■□□□ 1.97
NFKB1-204ENST00000504044 ZC3H13Q5T200 1668 aaKnown RBP27.37■■□□□ 1.97
NFKB1-204ENST00000504044 ABCC3O15438 1527 aa27.35■■□□□ 1.97
NFKB1-204ENST00000504044 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.34■■□□□ 1.97
NFKB1-204ENST00000504044 FBXO31Q5XUX0 539 aaPredicted RBP27.32■■□□□ 1.96
NFKB1-204ENST00000504044 MYO3AQ8NEV4 1616 aa27.31■■□□□ 1.96
NFKB1-204ENST00000504044 ANKRD50Q9ULJ7 1429 aa27.31■■□□□ 1.96
NFKB1-204ENST00000504044 PRDM15P57071 1507 aaPredicted RBP27.31■■□□□ 1.96
NFKB1-204ENST00000504044 ROCK1Q13464 1354 aa27.3■■□□□ 1.96
NFKB1-204ENST00000504044 A2ML1A8K2U0 1454 aa27.3■■□□□ 1.96
NFKB1-204ENST00000504044 CEP170BQ9Y4F5 1589 aaPredicted RBP27.29■■□□□ 1.96
NFKB1-204ENST00000504044 MROH1Q8NDA8 1641 aa27.27■■□□□ 1.96
NFKB1-204ENST00000504044 NLRP1Q9C000 1473 aa27.27■■□□□ 1.96
NFKB1-204ENST00000504044 ITGAEP38570 1179 aa27.27■■□□□ 1.96
NFKB1-204ENST00000504044 PKD2Q13563 968 aa27.27■■□□□ 1.96
NFKB1-204ENST00000504044 ZNF142P52746 1687 aaPredicted RBP27.26■■□□□ 1.95
NFKB1-204ENST00000504044 PLA2R1Q13018 1463 aa27.25■■□□□ 1.95
NFKB1-204ENST00000504044 CAMSAP1Q5T5Y3 1602 aa27.25■■□□□ 1.95
NFKB1-204ENST00000504044 PTPRTO14522 1441 aa27.24■■□□□ 1.95
NFKB1-204ENST00000504044 ARHGAP31Q2M1Z3 1444 aa27.24■■□□□ 1.95
NFKB1-204ENST00000504044 THEMISQ8N1K5 641 aaPredicted RBP27.23■■□□□ 1.95
NFKB1-204ENST00000504044 DEPDC5O75140 1603 aa27.23■■□□□ 1.95
NFKB1-204ENST00000504044 RRBP1Q9P2E9 1410 aaKnown RBP27.22■■□□□ 1.95
NFKB1-204ENST00000504044 ERVK-7P63135 1459 aa27.21■■□□□ 1.95
NFKB1-204ENST00000504044 SPATA31D1Q6ZQQ2 1576 aa27.19■■□□□ 1.94
NFKB1-204ENST00000504044 LMTK2Q8IWU2 1503 aa27.19■■□□□ 1.94
NFKB1-204ENST00000504044 CEP152O94986 1710 aa27.17■■□□□ 1.94
NFKB1-204ENST00000504044 STRCQ7RTU9 1775 aa27.17■■□□□ 1.94
NFKB1-204ENST00000504044 NCKAP5LQ9HCH0 1330 aa27.16■■□□□ 1.94
NFKB1-204ENST00000504044 UGGT1Q9NYU2 1555 aa27.15■■□□□ 1.94
NFKB1-204ENST00000504044 VWDEQ8N2E2 1590 aa27.14■■□□□ 1.93
NFKB1-204ENST00000504044 ANKLE2Q86XL3 938 aa27.13■■□□□ 1.93
NFKB1-204ENST00000504044 STAG3Q9UJ98 1225 aa27.09■■□□□ 1.93
NFKB1-204ENST00000504044 CERKQ8TCT0 537 aa27.08■■□□□ 1.93
NFKB1-204ENST00000504044 FBXO41Q8TF61 875 aa27.08■■□□□ 1.93
NFKB1-204ENST00000504044 RPRD2Q5VT52 1461 aaKnown RBP27.07■■□□□ 1.92
NFKB1-204ENST00000504044 EFCAB6Q5THR3 1501 aa27.07■■□□□ 1.92
NFKB1-204ENST00000504044 ILDR1Q86SU0 546 aaPredicted RBP27.07■■□□□ 1.92
NFKB1-204ENST00000504044 SLC52A1Q9NWF4 448 aa27.04■■□□□ 1.92
NFKB1-204ENST00000504044 UNC13BO14795 1591 aa27.04■■□□□ 1.92
NFKB1-204ENST00000504044 NUP155O75694 1391 aa27.03■■□□□ 1.92
NFKB1-204ENST00000504044 EID1Q9Y6B2 187 aa27■■□□□ 1.91
NFKB1-204ENST00000504044 NOS1P29475 1434 aa26.99■■□□□ 1.91
NFKB1-204ENST00000504044 TET3O43151 1660 aa26.98■■□□□ 1.91
NFKB1-204ENST00000504044 IDI1Q13907 227 aa26.96■■□□□ 1.91
NFKB1-204ENST00000504044 NPHP4O75161 1426 aaPredicted RBP26.96■■□□□ 1.91
NFKB1-204ENST00000504044 POLR1AO95602 1720 aaPredicted RBP26.94■■□□□ 1.9
NFKB1-204ENST00000504044 MED14O60244 1454 aa26.93■■□□□ 1.9
NFKB1-204ENST00000504044 HFM1A2PYH4 1435 aa26.93■■□□□ 1.9
NFKB1-204ENST00000504044 NAIPQ13075 1403 aa26.93■■□□□ 1.9
NFKB1-204ENST00000504044 CFAP65Q6ZU64 1925 aaKnown RBP26.93■■□□□ 1.9
NFKB1-204ENST00000504044 IQGAP3Q86VI3 1631 aa26.93■■□□□ 1.9
NFKB1-204ENST00000504044 TXNDC2Q86VQ3 553 aa26.92■■□□□ 1.9
NFKB1-204ENST00000504044 GCC2Q8IWJ2 1684 aa26.92■■□□□ 1.9
NFKB1-204ENST00000504044 ZNF335Q9H4Z2 1342 aaPredicted RBP26.91■■□□□ 1.9
NFKB1-204ENST00000504044 UBR1Q8IWV7 1749 aa26.91■■□□□ 1.9
NFKB1-204ENST00000504044 SCAF11Q99590 1463 aaKnown RBP26.91■■□□□ 1.9
NFKB1-204ENST00000504044 NEURL4Q96JN8 1562 aa26.9■■□□□ 1.9
NFKB1-204ENST00000504044 TMEM2Q9UHN6 1383 aa26.9■■□□□ 1.9
NFKB1-204ENST00000504044 HDGFP51858 240 aaKnown RBP26.9■■□□□ 1.9
NFKB1-204ENST00000504044 SLIT1O75093 1534 aa26.9■■□□□ 1.9
NFKB1-204ENST00000504044 IQSEC2Q5JU85 1478 aa26.89■■□□□ 1.9
NFKB1-204ENST00000504044 SYNMO15061 1565 aa26.88■■□□□ 1.89
NFKB1-204ENST00000504044 ARHGAP23Q9P227 1491 aa26.88■■□□□ 1.89
NFKB1-204ENST00000504044 PIK3C2BO00750 1634 aa26.88■■□□□ 1.89
NFKB1-204ENST00000504044 KDM5AP29375 1690 aaKnown RBP26.88■■□□□ 1.89
NFKB1-204ENST00000504044 LTBP4Q8N2S1 1624 aa26.87■■□□□ 1.89
NFKB1-204ENST00000504044 TRIM52Q96A61 297 aa26.87■■□□□ 1.89
NFKB1-204ENST00000504044 ADGRB3O60242 1522 aa26.85■■□□□ 1.89
NFKB1-204ENST00000504044 ACIN1Q9UKV3 1341 aaKnown RBP26.85■■□□□ 1.89
NFKB1-204ENST00000504044 IQGAP1P46940 1657 aa26.82■■□□□ 1.88
NFKB1-204ENST00000504044 CHGAP10645 457 aaKnown RBP26.82■■□□□ 1.88
NFKB1-204ENST00000504044 LTKP29376 864 aa26.82■■□□□ 1.88
NFKB1-204ENST00000504044 CPS1P31327 1500 aa26.81■■□□□ 1.88
NFKB1-204ENST00000504044 E9PCH4 1651 aa26.8■■□□□ 1.88
NFKB1-204ENST00000504044 PPP1R15AO75807 674 aaPredicted RBP26.79■■□□□ 1.88
NFKB1-204ENST00000504044 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.79■■□□□ 1.88
NFKB1-204ENST00000504044 BCANQ96GW7 911 aa26.77■■□□□ 1.88
NFKB1-204ENST00000504044 SLC4A1APQ9BWU0 796 aaKnown RBP26.75■■□□□ 1.87
NFKB1-204ENST00000504044 RIMS2Q9UQ26 1411 aa26.72■■□□□ 1.87
NFKB1-204ENST00000504044 UBAP1LF5GYI3 381 aa26.68■■□□□ 1.86
NFKB1-204ENST00000504044 TMEM131LA2VDJ0 1609 aa26.68■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms