RNA–Protein interactions for RNA: ENST00000503360.1

HMGB1P35-201, Transcript of high mobility group box 1 pseudogene 35, humanhuman

BASIC

Gene HMGB1P35, Length 598 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P35-201ENST00000503360 LAPTM4AQ15012 233 aa7.51□□□□□ -1.21
HMGB1P35-201ENST00000503360 PCDHGA10Q9Y5H3 936 aa7.51□□□□□ -1.21
HMGB1P35-201ENST00000503360 TYW1BQ6NUM6 668 aa7.5□□□□□ -1.21
HMGB1P35-201ENST00000503360 LARP6Q9BRS8 491 aaKnown RBP7.49□□□□□ -1.21
HMGB1P35-201ENST00000503360 KCNC4Q03721 635 aa7.48□□□□□ -1.21
HMGB1P35-201ENST00000503360 EPAS1Q99814 870 aa7.48□□□□□ -1.21
HMGB1P35-201ENST00000503360 GTPBP6O43824 516 aaPredicted RBP7.47□□□□□ -1.21
HMGB1P35-201ENST00000503360 COL9A1P20849 921 aa7.47□□□□□ -1.21
HMGB1P35-201ENST00000503360 ZFRQ96KR1 1074 aaKnown RBP7.47□□□□□ -1.21
HMGB1P35-201ENST00000503360 EMILIN3Q9NT22 766 aa7.47□□□□□ -1.21
HMGB1P35-201ENST00000503360 PROX2Q3B8N5 592 aa7.46□□□□□ -1.22
HMGB1P35-201ENST00000503360 BCAMP50895 628 aa7.44□□□□□ -1.22
HMGB1P35-201ENST00000503360 CAMK2BQ13554 666 aa7.44□□□□□ -1.22
HMGB1P35-201ENST00000503360 FAM98CQ17RN3 349 aaKnown RBP7.44□□□□□ -1.22
HMGB1P35-201ENST00000503360 KIAA1468Q9P260 1216 aa7.44□□□□□ -1.22
HMGB1P35-201ENST00000503360 Q6ZNB5 142 aa7.43□□□□□ -1.22
HMGB1P35-201ENST00000503360 TRIM6-TRIM34B2RNG4 842 aa7.42□□□□□ -1.22
HMGB1P35-201ENST00000503360 C6orf132Q5T0Z8 1188 aa7.42□□□□□ -1.22
HMGB1P35-201ENST00000503360 WBP1LQ9NX94 342 aa7.42□□□□□ -1.22
HMGB1P35-201ENST00000503360 TSR3Q9UJK0 312 aaKnown RBP7.42□□□□□ -1.22
HMGB1P35-201ENST00000503360 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.4□□□□□ -1.22
HMGB1P35-201ENST00000503360 LRCH3Q96II8 777 aa7.39□□□□□ -1.23
HMGB1P35-201ENST00000503360 PACS2Q86VP3 889 aa7.36□□□□□ -1.23
HMGB1P35-201ENST00000503360 SEPT9Q9UHD8 586 aaPredicted RBP7.35□□□□□ -1.23
HMGB1P35-201ENST00000503360 HPS5Q9UPZ3 1129 aa7.35□□□□□ -1.23
HMGB1P35-201ENST00000503360 V9GY48 417 aaPredicted RBP7.35□□□□□ -1.23
HMGB1P35-201ENST00000503360 TRAF7Q6Q0C0 670 aa7.34□□□□□ -1.23
HMGB1P35-201ENST00000503360 NRG2O14511 850 aaPredicted RBP7.33□□□□□ -1.24
HMGB1P35-201ENST00000503360 CERKQ8TCT0 537 aa7.33□□□□□ -1.24
HMGB1P35-201ENST00000503360 GFRA3O60609 400 aa7.32□□□□□ -1.24
HMGB1P35-201ENST00000503360 EN1Q05925 392 aaPredicted RBP7.32□□□□□ -1.24
HMGB1P35-201ENST00000503360 TJAP1Q5JTD0 557 aa7.32□□□□□ -1.24
HMGB1P35-201ENST00000503360 SPDYE16A6NNV3 312 aaPredicted RBP7.31□□□□□ -1.24
HMGB1P35-201ENST00000503360 PPP4CP60510 307 aa7.31□□□□□ -1.24
HMGB1P35-201ENST00000503360 DPYSL4O14531 572 aa7.3□□□□□ -1.24
HMGB1P35-201ENST00000503360 LCE2BO14633 110 aa7.3□□□□□ -1.24
HMGB1P35-201ENST00000503360 CADPS2Q86UW7 1296 aa7.3□□□□□ -1.24
HMGB1P35-201ENST00000503360 IL21Q9HBE4 155 aa7.3□□□□□ -1.24
HMGB1P35-201ENST00000503360 TSKSQ9UJT2 592 aa7.3□□□□□ -1.24
HMGB1P35-201ENST00000503360 NECTIN2Q92692 538 aa7.29□□□□□ -1.24
HMGB1P35-201ENST00000503360 PDIA6Q15084 440 aa7.28□□□□□ -1.24
HMGB1P35-201ENST00000503360 RBM27Q9P2N5 1060 aaKnown RBP7.28□□□□□ -1.24
HMGB1P35-201ENST00000503360 PRSS12P56730 875 aa7.27□□□□□ -1.25
HMGB1P35-201ENST00000503360 PRKD2Q9BZL6 878 aa7.27□□□□□ -1.25
HMGB1P35-201ENST00000503360 ARIH1Q9Y4X5 557 aaPredicted RBP7.27□□□□□ -1.25
HMGB1P35-201ENST00000503360 DDX12PQ92771 950 aa7.26□□□□□ -1.25
HMGB1P35-201ENST00000503360 RBM33Q96EV2 1170 aaKnown RBP7.26□□□□□ -1.25
HMGB1P35-201ENST00000503360 NBPF26B4DH59 902 aa7.25□□□□□ -1.25
HMGB1P35-201ENST00000503360 MAP3K7O43318 606 aa7.25□□□□□ -1.25
HMGB1P35-201ENST00000503360 CDCA7LQ96GN5 454 aa7.25□□□□□ -1.25
HMGB1P35-201ENST00000503360 MTRQ99707 1265 aa7.25□□□□□ -1.25
HMGB1P35-201ENST00000503360 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.25□□□□□ -1.25
HMGB1P35-201ENST00000503360 NBR1Q14596 966 aa7.24□□□□□ -1.25
HMGB1P35-201ENST00000503360 PPP1R18Q6NYC8 613 aa7.24□□□□□ -1.25
HMGB1P35-201ENST00000503360 SAMD7Q7Z3H4 446 aa7.24□□□□□ -1.25
HMGB1P35-201ENST00000503360 TMUB1Q9BVT8 246 aa7.24□□□□□ -1.25
HMGB1P35-201ENST00000503360 HDGFP51858 240 aaKnown RBP7.23□□□□□ -1.25
HMGB1P35-201ENST00000503360 GGCXP38435 758 aa7.22□□□□□ -1.25
HMGB1P35-201ENST00000503360 TSR1Q2NL82 804 aaKnown RBP7.22□□□□□ -1.25
HMGB1P35-201ENST00000503360 TATDN2Q93075 761 aa7.22□□□□□ -1.25
HMGB1P35-201ENST00000503360 FAM198AQ9UFP1 575 aa7.2□□□□□ -1.26
HMGB1P35-201ENST00000503360 PNMA3Q9UL41 463 aa7.18□□□□□ -1.26
HMGB1P35-201ENST00000503360 PDZRN3Q9UPQ7 1066 aa7.18□□□□□ -1.26
HMGB1P35-201ENST00000503360 APLP1P51693 650 aa7.17□□□□□ -1.26
HMGB1P35-201ENST00000503360 ZNF787Q6DD87 383 aa7.17□□□□□ -1.26
HMGB1P35-201ENST00000503360 TTC13Q8NBP0 860 aa7.17□□□□□ -1.26
HMGB1P35-201ENST00000503360 ZNF516Q92618 1163 aa7.17□□□□□ -1.26
HMGB1P35-201ENST00000503360 PRR14Q9BWN1 585 aa7.17□□□□□ -1.26
HMGB1P35-201ENST00000503360 SLF2Q8IX21 1173 aa7.16□□□□□ -1.26
HMGB1P35-201ENST00000503360 SMAPO00193 183 aa7.15□□□□□ -1.26
HMGB1P35-201ENST00000503360 C3orf80F5H4A9 247 aa7.14□□□□□ -1.27
HMGB1P35-201ENST00000503360 SLC4A3P48751 1232 aa7.14□□□□□ -1.27
HMGB1P35-201ENST00000503360 NUDT18Q6ZVK8 323 aa7.14□□□□□ -1.27
HMGB1P35-201ENST00000503360 OSBPP22059 807 aa7.13□□□□□ -1.27
HMGB1P35-201ENST00000503360 E2F4Q16254 413 aa7.13□□□□□ -1.27
HMGB1P35-201ENST00000503360 BBXQ8WY36 941 aaPredicted RBP7.13□□□□□ -1.27
HMGB1P35-201ENST00000503360 ZPR1O75312 459 aa7.12□□□□□ -1.27
HMGB1P35-201ENST00000503360 PRIM1P49642 420 aaKnown RBP7.12□□□□□ -1.27
HMGB1P35-201ENST00000503360 PRR20EP86478 221 aa7.12□□□□□ -1.27
HMGB1P35-201ENST00000503360 PRR20CP86479 221 aa7.12□□□□□ -1.27
HMGB1P35-201ENST00000503360 PRR20DP86480 221 aa7.12□□□□□ -1.27
HMGB1P35-201ENST00000503360 PRR20BP86481 221 aa7.12□□□□□ -1.27
HMGB1P35-201ENST00000503360 PRR20AP86496 221 aa7.12□□□□□ -1.27
HMGB1P35-201ENST00000503360 DGAT1O75907 488 aa7.11□□□□□ -1.27
HMGB1P35-201ENST00000503360 ZNF775Q96BV0 537 aaPredicted RBP7.11□□□□□ -1.27
HMGB1P35-201ENST00000503360 DCAF8L2P0C7V8 631 aa7.1□□□□□ -1.27
HMGB1P35-201ENST00000503360 NKX2-3Q8TAU0 364 aa7.1□□□□□ -1.27
HMGB1P35-201ENST00000503360 SWT1Q5T5J6 900 aaKnown RBP7.09□□□□□ -1.27
HMGB1P35-201ENST00000503360 TRIM67Q6ZTA4 783 aa7.09□□□□□ -1.27
HMGB1P35-201ENST00000503360 GRXCR2A6NFK2 248 aa7.08□□□□□ -1.28
HMGB1P35-201ENST00000503360 RNF40O75150 1001 aa7.08□□□□□ -1.28
HMGB1P35-201ENST00000503360 ZNF598Q86UK7 904 aaKnown RBP7.08□□□□□ -1.28
HMGB1P35-201ENST00000503360 ANKLE1Q8NAG6 615 aa7.08□□□□□ -1.28
HMGB1P35-201ENST00000503360 EYA1Q99502 592 aa7.08□□□□□ -1.28
HMGB1P35-201ENST00000503360 NPDC1Q9NQX5 325 aaPredicted RBP7.08□□□□□ -1.28
HMGB1P35-201ENST00000503360 SLC19A1P41440 591 aa7.07□□□□□ -1.28
HMGB1P35-201ENST00000503360 RNF223E7ERA6 249 aa7.06□□□□□ -1.28
HMGB1P35-201ENST00000503360 SPRYD7Q5W111 196 aa7.06□□□□□ -1.28
HMGB1P35-201ENST00000503360 CDHR5Q9HBB8 845 aa7.06□□□□□ -1.28
HMGB1P35-201ENST00000503360 PCDHB3Q9Y5E6 796 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms