RNA–Protein interactions for RNA: ENST00000503360.1

HMGB1P35-201, Transcript of high mobility group box 1 pseudogene 35, humanhuman

BASIC

Gene HMGB1P35, Length 598 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P35-201ENST00000503360 LAPTM4AQ15012 233 aa7.51□□□□□ -1.21
HMGB1P35-201ENST00000503360 PCDHGA10Q9Y5H3 936 aa7.51□□□□□ -1.21
HMGB1P35-201ENST00000503360 TYW1BQ6NUM6 668 aa7.5□□□□□ -1.21
HMGB1P35-201ENST00000503360 LARP6Q9BRS8 491 aaKnown RBP7.49□□□□□ -1.21
HMGB1P35-201ENST00000503360 KCNC4Q03721 635 aa7.48□□□□□ -1.21
HMGB1P35-201ENST00000503360 EPAS1Q99814 870 aa7.48□□□□□ -1.21
HMGB1P35-201ENST00000503360 GTPBP6O43824 516 aaPredicted RBP7.47□□□□□ -1.21
HMGB1P35-201ENST00000503360 COL9A1P20849 921 aa7.47□□□□□ -1.21
HMGB1P35-201ENST00000503360 ZFRQ96KR1 1074 aaKnown RBP7.47□□□□□ -1.21
HMGB1P35-201ENST00000503360 EMILIN3Q9NT22 766 aa7.47□□□□□ -1.21
HMGB1P35-201ENST00000503360 PROX2Q3B8N5 592 aa7.46□□□□□ -1.22
HMGB1P35-201ENST00000503360 BCAMP50895 628 aa7.44□□□□□ -1.22
HMGB1P35-201ENST00000503360 CAMK2BQ13554 666 aa7.44□□□□□ -1.22
HMGB1P35-201ENST00000503360 FAM98CQ17RN3 349 aaKnown RBP7.44□□□□□ -1.22
HMGB1P35-201ENST00000503360 KIAA1468Q9P260 1216 aa7.44□□□□□ -1.22
HMGB1P35-201ENST00000503360 Q6ZNB5 142 aa7.43□□□□□ -1.22
HMGB1P35-201ENST00000503360 TRIM6-TRIM34B2RNG4 842 aa7.42□□□□□ -1.22
HMGB1P35-201ENST00000503360 C6orf132Q5T0Z8 1188 aa7.42□□□□□ -1.22
HMGB1P35-201ENST00000503360 WBP1LQ9NX94 342 aa7.42□□□□□ -1.22
HMGB1P35-201ENST00000503360 TSR3Q9UJK0 312 aaKnown RBP7.42□□□□□ -1.22
HMGB1P35-201ENST00000503360 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.4□□□□□ -1.22
HMGB1P35-201ENST00000503360 LRCH3Q96II8 777 aa7.39□□□□□ -1.23
HMGB1P35-201ENST00000503360 PACS2Q86VP3 889 aa7.36□□□□□ -1.23
HMGB1P35-201ENST00000503360 SEPT9Q9UHD8 586 aaPredicted RBP7.35□□□□□ -1.23
HMGB1P35-201ENST00000503360 HPS5Q9UPZ3 1129 aa7.35□□□□□ -1.23
HMGB1P35-201ENST00000503360 V9GY48 417 aaPredicted RBP7.35□□□□□ -1.23
HMGB1P35-201ENST00000503360 TRAF7Q6Q0C0 670 aa7.34□□□□□ -1.23
HMGB1P35-201ENST00000503360 NRG2O14511 850 aaPredicted RBP7.33□□□□□ -1.24
HMGB1P35-201ENST00000503360 CERKQ8TCT0 537 aa7.33□□□□□ -1.24
HMGB1P35-201ENST00000503360 GFRA3O60609 400 aa7.32□□□□□ -1.24
HMGB1P35-201ENST00000503360 EN1Q05925 392 aaPredicted RBP7.32□□□□□ -1.24
HMGB1P35-201ENST00000503360 TJAP1Q5JTD0 557 aa7.32□□□□□ -1.24
HMGB1P35-201ENST00000503360 SPDYE16A6NNV3 312 aaPredicted RBP7.31□□□□□ -1.24
HMGB1P35-201ENST00000503360 PPP4CP60510 307 aa7.31□□□□□ -1.24
HMGB1P35-201ENST00000503360 DPYSL4O14531 572 aa7.3□□□□□ -1.24
HMGB1P35-201ENST00000503360 LCE2BO14633 110 aa7.3□□□□□ -1.24
HMGB1P35-201ENST00000503360 CADPS2Q86UW7 1296 aa7.3□□□□□ -1.24
HMGB1P35-201ENST00000503360 IL21Q9HBE4 155 aa7.3□□□□□ -1.24
HMGB1P35-201ENST00000503360 TSKSQ9UJT2 592 aa7.3□□□□□ -1.24
HMGB1P35-201ENST00000503360 NECTIN2Q92692 538 aa7.29□□□□□ -1.24
HMGB1P35-201ENST00000503360 PDIA6Q15084 440 aa7.28□□□□□ -1.24
HMGB1P35-201ENST00000503360 RBM27Q9P2N5 1060 aaKnown RBP7.28□□□□□ -1.24
HMGB1P35-201ENST00000503360 PRSS12P56730 875 aa7.27□□□□□ -1.25
HMGB1P35-201ENST00000503360 PRKD2Q9BZL6 878 aa7.27□□□□□ -1.25
HMGB1P35-201ENST00000503360 ARIH1Q9Y4X5 557 aaPredicted RBP7.27□□□□□ -1.25
HMGB1P35-201ENST00000503360 DDX12PQ92771 950 aa7.26□□□□□ -1.25
HMGB1P35-201ENST00000503360 RBM33Q96EV2 1170 aaKnown RBP7.26□□□□□ -1.25
HMGB1P35-201ENST00000503360 NBPF26B4DH59 902 aa7.25□□□□□ -1.25
HMGB1P35-201ENST00000503360 MAP3K7O43318 606 aa7.25□□□□□ -1.25
HMGB1P35-201ENST00000503360 CDCA7LQ96GN5 454 aa7.25□□□□□ -1.25
HMGB1P35-201ENST00000503360 MTRQ99707 1265 aa7.25□□□□□ -1.25
HMGB1P35-201ENST00000503360 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.25□□□□□ -1.25
HMGB1P35-201ENST00000503360 NBR1Q14596 966 aa7.24□□□□□ -1.25
HMGB1P35-201ENST00000503360 PPP1R18Q6NYC8 613 aa7.24□□□□□ -1.25
HMGB1P35-201ENST00000503360 SAMD7Q7Z3H4 446 aa7.24□□□□□ -1.25
HMGB1P35-201ENST00000503360 TMUB1Q9BVT8 246 aa7.24□□□□□ -1.25
HMGB1P35-201ENST00000503360 HDGFP51858 240 aaKnown RBP7.23□□□□□ -1.25
HMGB1P35-201ENST00000503360 GGCXP38435 758 aa7.22□□□□□ -1.25
HMGB1P35-201ENST00000503360 TSR1Q2NL82 804 aaKnown RBP7.22□□□□□ -1.25
HMGB1P35-201ENST00000503360 TATDN2Q93075 761 aa7.22□□□□□ -1.25
HMGB1P35-201ENST00000503360 FAM198AQ9UFP1 575 aa7.2□□□□□ -1.26
HMGB1P35-201ENST00000503360 PNMA3Q9UL41 463 aa7.18□□□□□ -1.26
HMGB1P35-201ENST00000503360 PDZRN3Q9UPQ7 1066 aa7.18□□□□□ -1.26
HMGB1P35-201ENST00000503360 APLP1P51693 650 aa7.17□□□□□ -1.26
HMGB1P35-201ENST00000503360 ZNF787Q6DD87 383 aa7.17□□□□□ -1.26
HMGB1P35-201ENST00000503360 TTC13Q8NBP0 860 aa7.17□□□□□ -1.26
HMGB1P35-201ENST00000503360 ZNF516Q92618 1163 aa7.17□□□□□ -1.26
HMGB1P35-201ENST00000503360 PRR14Q9BWN1 585 aa7.17□□□□□ -1.26
HMGB1P35-201ENST00000503360 SLF2Q8IX21 1173 aa7.16□□□□□ -1.26
HMGB1P35-201ENST00000503360 SMAPO00193 183 aa7.15□□□□□ -1.26
HMGB1P35-201ENST00000503360 C3orf80F5H4A9 247 aa7.14□□□□□ -1.27
HMGB1P35-201ENST00000503360 SLC4A3P48751 1232 aa7.14□□□□□ -1.27
HMGB1P35-201ENST00000503360 NUDT18Q6ZVK8 323 aa7.14□□□□□ -1.27
HMGB1P35-201ENST00000503360 OSBPP22059 807 aa7.13□□□□□ -1.27
HMGB1P35-201ENST00000503360 E2F4Q16254 413 aa7.13□□□□□ -1.27
HMGB1P35-201ENST00000503360 BBXQ8WY36 941 aaPredicted RBP7.13□□□□□ -1.27
HMGB1P35-201ENST00000503360 ZPR1O75312 459 aa7.12□□□□□ -1.27
HMGB1P35-201ENST00000503360 PRIM1P49642 420 aaKnown RBP7.12□□□□□ -1.27
HMGB1P35-201ENST00000503360 PRR20EP86478 221 aa7.12□□□□□ -1.27
HMGB1P35-201ENST00000503360 PRR20CP86479 221 aa7.12□□□□□ -1.27
HMGB1P35-201ENST00000503360 PRR20DP86480 221 aa7.12□□□□□ -1.27
HMGB1P35-201ENST00000503360 PRR20BP86481 221 aa7.12□□□□□ -1.27
HMGB1P35-201ENST00000503360 PRR20AP86496 221 aa7.12□□□□□ -1.27
HMGB1P35-201ENST00000503360 DGAT1O75907 488 aa7.11□□□□□ -1.27
HMGB1P35-201ENST00000503360 ZNF775Q96BV0 537 aaPredicted RBP7.11□□□□□ -1.27
HMGB1P35-201ENST00000503360 DCAF8L2P0C7V8 631 aa7.1□□□□□ -1.27
HMGB1P35-201ENST00000503360 NKX2-3Q8TAU0 364 aa7.1□□□□□ -1.27
HMGB1P35-201ENST00000503360 SWT1Q5T5J6 900 aaKnown RBP7.09□□□□□ -1.27
HMGB1P35-201ENST00000503360 TRIM67Q6ZTA4 783 aa7.09□□□□□ -1.27
HMGB1P35-201ENST00000503360 GRXCR2A6NFK2 248 aa7.08□□□□□ -1.28
HMGB1P35-201ENST00000503360 RNF40O75150 1001 aa7.08□□□□□ -1.28
HMGB1P35-201ENST00000503360 ZNF598Q86UK7 904 aaKnown RBP7.08□□□□□ -1.28
HMGB1P35-201ENST00000503360 ANKLE1Q8NAG6 615 aa7.08□□□□□ -1.28
HMGB1P35-201ENST00000503360 EYA1Q99502 592 aa7.08□□□□□ -1.28
HMGB1P35-201ENST00000503360 NPDC1Q9NQX5 325 aaPredicted RBP7.08□□□□□ -1.28
HMGB1P35-201ENST00000503360 SLC19A1P41440 591 aa7.07□□□□□ -1.28
HMGB1P35-201ENST00000503360 RNF223E7ERA6 249 aa7.06□□□□□ -1.28
HMGB1P35-201ENST00000503360 SPRYD7Q5W111 196 aa7.06□□□□□ -1.28
HMGB1P35-201ENST00000503360 CDHR5Q9HBB8 845 aa7.06□□□□□ -1.28
HMGB1P35-201ENST00000503360 PCDHB3Q9Y5E6 796 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms