RNA–Protein interactions for RNA: ENST00000498614.5

COL6A1-206, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL6A1, Length 2,358 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-206ENST00000498614 FANCAO15360 1455 aa22.43■■□□□ 1.18
COL6A1-206ENST00000498614 SYCP2Q9BX26 1530 aa22.42■■□□□ 1.18
COL6A1-206ENST00000498614 ARHGEF12Q9NZN5 1544 aa22.42■■□□□ 1.18
COL6A1-206ENST00000498614 FAM9BQ8IZU0 186 aa22.41■■□□□ 1.18
COL6A1-206ENST00000498614 KIF15Q9NS87 1388 aa22.41■■□□□ 1.18
COL6A1-206ENST00000498614 AFAP1Q8N556 730 aa22.41■■□□□ 1.18
COL6A1-206ENST00000498614 ARHGEF5Q12774 1597 aa22.39■■□□□ 1.18
COL6A1-206ENST00000498614 USP47Q96K76 1375 aa22.39■■□□□ 1.17
COL6A1-206ENST00000498614 MRS2Q9HD23 443 aa22.38■■□□□ 1.17
COL6A1-206ENST00000498614 ERICH6Q7L0X2 663 aa22.38■■□□□ 1.17
COL6A1-206ENST00000498614 BCORL1Q5H9F3 1711 aa22.37■■□□□ 1.17
COL6A1-206ENST00000498614 KDM5DQ9BY66 1539 aa22.37■■□□□ 1.17
COL6A1-206ENST00000498614 POLR3GLQ9BT43 218 aa22.36■■□□□ 1.17
COL6A1-206ENST00000498614 DIP2BQ9P265 1576 aa22.36■■□□□ 1.17
COL6A1-206ENST00000498614 TRAPPC8Q9Y2L5 1435 aa22.36■■□□□ 1.17
COL6A1-206ENST00000498614 B4GALNT3Q6L9W6 998 aa22.35■■□□□ 1.17
COL6A1-206ENST00000498614 CCDC141Q6ZP82 1450 aa22.35■■□□□ 1.17
COL6A1-206ENST00000498614 ZBED9Q6R2W3 1325 aa22.35■■□□□ 1.17
COL6A1-206ENST00000498614 KDM5CP41229 1560 aa22.34■■□□□ 1.17
COL6A1-206ENST00000498614 TSPOAP1O95153 1857 aa22.34■■□□□ 1.17
COL6A1-206ENST00000498614 SCAPERQ9BY12 1400 aa22.34■■□□□ 1.17
COL6A1-206ENST00000498614 ADGRL1O94910 1474 aa22.32■■□□□ 1.16
COL6A1-206ENST00000498614 CNGB1Q14028 1251 aaPredicted RBP22.32■■□□□ 1.16
COL6A1-206ENST00000498614 ABCC1P33527 1531 aa22.32■■□□□ 1.16
COL6A1-206ENST00000498614 ARAP3Q8WWN8 1544 aa22.31■■□□□ 1.16
COL6A1-206ENST00000498614 UHRF1BP1Q6BDS2 1440 aa22.31■■□□□ 1.16
COL6A1-206ENST00000498614 MYT1LQ9UL68 1186 aa22.31■■□□□ 1.16
COL6A1-206ENST00000498614 KDM2AQ9Y2K7 1162 aa22.31■■□□□ 1.16
COL6A1-206ENST00000498614 TRHP20396 242 aaPredicted RBP22.3■■□□□ 1.16
COL6A1-206ENST00000498614 RALGAPBQ86X10 1494 aa22.3■■□□□ 1.16
COL6A1-206ENST00000498614 RAPGEF3O95398 923 aa22.3■■□□□ 1.16
COL6A1-206ENST00000498614 MAP3K4Q9Y6R4 1608 aa22.29■■□□□ 1.16
COL6A1-206ENST00000498614 RSPH4AQ5TD94 716 aa22.29■■□□□ 1.16
COL6A1-206ENST00000498614 PLEKHH2Q8IVE3 1493 aa22.29■■□□□ 1.16
COL6A1-206ENST00000498614 GLI2P10070 1586 aa22.28■■□□□ 1.16
COL6A1-206ENST00000498614 DHX29Q7Z478 1369 aaKnown RBP22.28■■□□□ 1.16
COL6A1-206ENST00000498614 CARD11Q9BXL7 1154 aa22.27■■□□□ 1.16
COL6A1-206ENST00000498614 FAM135AQ9P2D6 1515 aa22.27■■□□□ 1.16
COL6A1-206ENST00000498614 DCAF11Q8TEB1 546 aa22.26■■□□□ 1.15
COL6A1-206ENST00000498614 KIF13AQ9H1H9 1805 aa22.26■■□□□ 1.15
COL6A1-206ENST00000498614 SPAG9O60271 1321 aaKnown RBP22.24■■□□□ 1.15
COL6A1-206ENST00000498614 ARID4BQ4LE39 1312 aaPredicted RBP22.2■■□□□ 1.14
COL6A1-206ENST00000498614 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.2■■□□□ 1.144e-7■■■■□ 22.7
COL6A1-206ENST00000498614 MAST1Q9Y2H9 1570 aa22.19■■□□□ 1.14
COL6A1-206ENST00000498614 ST20-MTHFSA0A0A6YYL1 179 aa22.18■■□□□ 1.14
COL6A1-206ENST00000498614 PPRC1Q5VV67 1664 aaKnown RBP22.18■■□□□ 1.14
COL6A1-206ENST00000498614 NEO1Q92859 1461 aa22.17■■□□□ 1.14
COL6A1-206ENST00000498614 UNC13BO14795 1591 aa22.16■■□□□ 1.14
COL6A1-206ENST00000498614 CCDC144AA2RUR9 1427 aa22.16■■□□□ 1.14
COL6A1-206ENST00000498614 SMG6Q86US8 1419 aaKnown RBP22.15■■□□□ 1.14
COL6A1-206ENST00000498614 ROCK2O75116 1388 aaKnown RBP22.15■■□□□ 1.14
COL6A1-206ENST00000498614 CFAP74Q9C0B2 1584 aa22.14■■□□□ 1.14
COL6A1-206ENST00000498614 RGL3Q3MIN7 710 aa22.14■■□□□ 1.13
COL6A1-206ENST00000498614 POGZQ7Z3K3 1410 aa22.14■■□□□ 1.13
COL6A1-206ENST00000498614 ZNF518AQ6AHZ1 1483 aa22.14■■□□□ 1.13
COL6A1-206ENST00000498614 PLXNC1O60486 1568 aa22.12■■□□□ 1.13
COL6A1-206ENST00000498614 PLA2R1Q13018 1463 aa22.11■■□□□ 1.13
COL6A1-206ENST00000498614 ZFYVE16Q7Z3T8 1539 aa22.11■■□□□ 1.13
COL6A1-206ENST00000498614 TRPM1Q7Z4N2 1603 aa22.1■■□□□ 1.13
COL6A1-206ENST00000498614 PRAG1Q86YV5 1406 aa22.1■■□□□ 1.13
COL6A1-206ENST00000498614 COL17A1Q9UMD9 1497 aaPredicted RBP22.09■■□□□ 1.13
COL6A1-206ENST00000498614 ATP7AQ04656 1500 aa22.09■■□□□ 1.13
COL6A1-206ENST00000498614 NUDCQ9Y266 331 aa22.09■■□□□ 1.13
COL6A1-206ENST00000498614 IQGAP3Q86VI3 1631 aa22.09■■□□□ 1.13
COL6A1-206ENST00000498614 NOP58Q9Y2X3 529 aaKnown RBP22.09■■□□□ 1.13
COL6A1-206ENST00000498614 RNF123Q5XPI4 1314 aa22.07■■□□□ 1.12
COL6A1-206ENST00000498614 RTEL1-TNFRSF6BF6WH68 1400 aa22.07■■□□□ 1.12
COL6A1-206ENST00000498614 DUOX2Q9NRD8 1548 aa22.06■■□□□ 1.12
COL6A1-206ENST00000498614 PAK3O75914 559 aaPredicted RBP22.06■■□□□ 1.12
COL6A1-206ENST00000498614 KIDINS220Q9ULH0 1771 aa22.06■■□□□ 1.12
COL6A1-206ENST00000498614 A2MP01023 1474 aa22.06■■□□□ 1.12
COL6A1-206ENST00000498614 DEKP35659 375 aaKnown RBP22.06■■□□□ 1.12
COL6A1-206ENST00000498614 NBPF1Q3BBV0 1214 aa22.06■■□□□ 1.12
COL6A1-206ENST00000498614 SENP3-EIF4A1A0A087X0R7 540 aa22.05■■□□□ 1.12
COL6A1-206ENST00000498614 INO80Q9ULG1 1556 aaPredicted RBP22.05■■□□□ 1.12
COL6A1-206ENST00000498614 E9PCH4 1651 aa22.04■■□□□ 1.12
COL6A1-206ENST00000498614 TMC1Q8TDI8 760 aa22.04■■□□□ 1.12
COL6A1-206ENST00000498614 RICTORQ6R327 1708 aa22.03■■□□□ 1.12
COL6A1-206ENST00000498614 CCDC136Q96JN2 1154 aa22.03■■□□□ 1.12
COL6A1-206ENST00000498614 YEATS2Q9ULM3 1422 aa22.03■■□□□ 1.12
COL6A1-206ENST00000498614 KIF3BO15066 747 aa22.03■■□□□ 1.12
COL6A1-206ENST00000498614 PNISRQ8TF01 805 aaKnown RBP22.02■■□□□ 1.11
COL6A1-206ENST00000498614 ERBINQ96RT1 1412 aa22.01■■□□□ 1.11
COL6A1-206ENST00000498614 FRMPD1Q5SYB0 1578 aa22.01■■□□□ 1.11
COL6A1-206ENST00000498614 MAGI2Q86UL8 1455 aa22■■□□□ 1.11
COL6A1-206ENST00000498614 MLH3Q9UHC1 1453 aa22■■□□□ 1.11
COL6A1-206ENST00000498614 HECW2Q9P2P5 1572 aa21.99■■□□□ 1.11
COL6A1-206ENST00000498614 NBR1Q14596 966 aa21.99■■□□□ 1.11
COL6A1-206ENST00000498614 MYBBP1AQ9BQG0 1328 aaKnown RBP21.98■■□□□ 1.11
COL6A1-206ENST00000498614 GPRASP1Q5JY77 1395 aa21.97■■□□□ 1.11
COL6A1-206ENST00000498614 ABCA6Q8N139 1617 aa21.96■■□□□ 1.11
COL6A1-206ENST00000498614 RALBP1Q15311 655 aa21.95■■□□□ 1.1
COL6A1-206ENST00000498614 PRDM15P57071 1507 aaPredicted RBP21.95■■□□□ 1.1
COL6A1-206ENST00000498614 GGT6Q6P531 493 aa21.95■■□□□ 1.1
COL6A1-206ENST00000498614 ATP10AO60312 1499 aa21.94■■□□□ 1.1
COL6A1-206ENST00000498614 BRD4O60885 1362 aaPredicted RBP21.94■■□□□ 1.1
COL6A1-206ENST00000498614 KTN1Q86UP2 1357 aaKnown RBP21.93■■□□□ 1.1
COL6A1-206ENST00000498614 LAMC1P11047 1609 aa21.93■■□□□ 1.1
COL6A1-206ENST00000498614 EIF2AK4Q9P2K8 1649 aaKnown RBP21.93■■□□□ 1.1
COL6A1-206ENST00000498614 IPO9Q96P70 1041 aaKnown RBP21.92■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 93.1 ms