RNA–Protein interactions for RNA: ENST00000498035.5

HM13-224, Transcript of histocompatibility minor 13, human

TSL 2 BASIC

Gene HM13, Length 3,932 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HM13-224	ENST00000498035	LAS1L	Q9Y4W2	734 aa	Known RBP	11.56	□□□□□ -0.56
HM13-224	ENST00000498035	CCDC82	Q8N4S0	544 aa		11.56	□□□□□ -0.56
HM13-224	ENST00000498035	DNMBP	Q6XZF7	1577 aa		11.55	□□□□□ -0.56
HM13-224	ENST00000498035	PHLDB1	Q86UU1	1377 aa		11.55	□□□□□ -0.56
HM13-224	ENST00000498035	SMARCA5	O60264	1052 aa	Predicted RBP	11.55	□□□□□ -0.56
HM13-224	ENST00000498035	LRRC9	Q6ZRR7	1453 aa		11.54	□□□□□ -0.56
HM13-224	ENST00000498035	MAFG	O15525	162 aa		11.53	□□□□□ -0.56
HM13-224	ENST00000498035	BRD1	O95696	1058 aa		11.53	□□□□□ -0.56
HM13-224	ENST00000498035	APP	P05067	770 aa		11.53	□□□□□ -0.56
HM13-224	ENST00000498035	HNRNPU	Q00839	825 aa	Known RBP eCLIP	11.53	□□□□□ -0.56
HM13-224	ENST00000498035	BIVM-ERCC5	R4GMW8	1640 aa		11.53	□□□□□ -0.56
HM13-224	ENST00000498035	FOXD1	Q16676	465 aa		11.53	□□□□□ -0.56
HM13-224	ENST00000498035	HSP90AB4P	Q58FF6	505 aa		11.52	□□□□□ -0.57
HM13-224	ENST00000498035	TMTC2	Q8N394	836 aa		11.52	□□□□□ -0.57
HM13-224	ENST00000498035	ABCA10	Q8WWZ4	1543 aa		11.51	□□□□□ -0.57
HM13-224	ENST00000498035	RGL3	Q3MIN7	710 aa		11.51	□□□□□ -0.57
HM13-224	ENST00000498035	CASKIN1	Q8WXD9	1431 aa		11.5	□□□□□ -0.57
HM13-224	ENST00000498035	CHGA	P10645	457 aa	Known RBP	11.5	□□□□□ -0.57
HM13-224	ENST00000498035	WDR97	A6NE52	1622 aa		11.5	□□□□□ -0.57
HM13-224	ENST00000498035	LOC102724159	A0A0B4J2E5	919 aa		11.5	□□□□□ -0.57
HM13-224	ENST00000498035	PWP2	Q15269	919 aa	Known RBP	11.5	□□□□□ -0.57
HM13-224	ENST00000498035	CCDC18	Q5T9S5	1454 aa		11.49	□□□□□ -0.57
HM13-224	ENST00000498035	MPHOSPH9	Q99550	1183 aa		11.49	□□□□□ -0.57
HM13-224	ENST00000498035	LAMC3	Q9Y6N6	1575 aa		11.49	□□□□□ -0.57
HM13-224	ENST00000498035	PPP1R15A	O75807	674 aa	Predicted RBP	11.49	□□□□□ -0.57
HM13-224	ENST00000498035	GRIN2B	Q13224	1484 aa		11.49	□□□□□ -0.57
HM13-224	ENST00000498035	RRBP1	Q9P2E9	1410 aa	Known RBP	11.49	□□□□□ -0.57
HM13-224	ENST00000498035	LRRIQ1	Q96JM4	1722 aa		11.48	□□□□□ -0.57
HM13-224	ENST00000498035	CLGN	O14967	610 aa		11.48	□□□□□ -0.57
HM13-224	ENST00000498035	EXOC8	Q8IYI6	725 aa		11.48	□□□□□ -0.57
HM13-224	ENST00000498035	STAC3	Q96MF2	364 aa		11.48	□□□□□ -0.57
HM13-224	ENST00000498035	MRC2	Q9UBG0	1479 aa		11.48	□□□□□ -0.57
HM13-224	ENST00000498035	MRS2	Q9HD23	443 aa		11.47	□□□□□ -0.57
HM13-224	ENST00000498035	FGD6	Q6ZV73	1430 aa		11.47	□□□□□ -0.57
HM13-224	ENST00000498035	FBXW7	Q969H0	707 aa		11.46	□□□□□ -0.57
HM13-224	ENST00000498035	CDCA8	Q53HL2	280 aa		11.46	□□□□□ -0.57
HM13-224	ENST00000498035	IL27	Q8NEV9	243 aa		11.46	□□□□□ -0.58
HM13-224	ENST00000498035	FYCO1	Q9BQS8	1478 aa		11.45	□□□□□ -0.58
HM13-224	ENST00000498035	URB2	Q14146	1524 aa	Known RBP	11.44	□□□□□ -0.58
HM13-224	ENST00000498035	PPP4R3CP	Q6ZMV5	832 aa		11.44	□□□□□ -0.58
HM13-224	ENST00000498035	EFCAB5	A4FU69	1503 aa		11.44	□□□□□ -0.58
HM13-224	ENST00000498035	MYOM3	Q5VTT5	1437 aa		11.44	□□□□□ -0.58
HM13-224	ENST00000498035	SGSM3	Q96HU1	749 aa		11.43	□□□□□ -0.58
HM13-224	ENST00000498035	CARD11	Q9BXL7	1154 aa		11.43	□□□□□ -0.58
HM13-224	ENST00000498035	TIAM1	Q13009	1591 aa		11.43	□□□□□ -0.58
HM13-224	ENST00000498035	TMC1	Q8TDI8	760 aa		11.42	□□□□□ -0.58
HM13-224	ENST00000498035	PHF14	O94880	888 aa		11.42	□□□□□ -0.58
HM13-224	ENST00000498035	HNRNPM	P52272	730 aa	Known RBP eCLIP	11.42	□□□□□ -0.58
HM13-224	ENST00000498035	ZNF622	Q969S3	477 aa	Known RBP eCLIP	11.42	□□□□□ -0.58
HM13-224	ENST00000498035	IFT140	Q96RY7	1462 aa		11.42	□□□□□ -0.58
HM13-224	ENST00000498035	NCOA2	Q15596	1464 aa		11.41	□□□□□ -0.58
HM13-224	ENST00000498035	ANKRD30A	Q9BXX3	1397 aa		11.41	□□□□□ -0.58
HM13-224	ENST00000498035	ZNF644	Q9H582	1327 aa	Predicted RBP	11.41	□□□□□ -0.58
HM13-224	ENST00000498035	L3MBTL2	Q969R5	705 aa		11.41	□□□□□ -0.58
HM13-224	ENST00000498035	PTPRG	P23470	1445 aa		11.41	□□□□□ -0.58
HM13-224	ENST00000498035	HSPA5	P11021	654 aa	Known RBP	11.41	□□□□□ -0.58
HM13-224	ENST00000498035	HDAC5	Q9UQL6	1122 aa		11.41	□□□□□ -0.58
HM13-224	ENST00000498035	LMOD2	Q6P5Q4	547 aa		11.4	□□□□□ -0.58
HM13-224	ENST00000498035	RIPOR2	Q9Y4F9	1068 aa		11.4	□□□□□ -0.58
HM13-224	ENST00000498035	NUP155	O75694	1391 aa		11.4	□□□□□ -0.58
HM13-224	ENST00000498035	DCAF11	Q8TEB1	546 aa		11.4	□□□□□ -0.59
HM13-224	ENST00000498035	MAPK8IP2	Q13387	824 aa	Predicted RBP	11.39	□□□□□ -0.59
HM13-224	ENST00000498035	CCDC125	Q86Z20	511 aa		11.39	□□□□□ -0.59
HM13-224	ENST00000498035	SLC24A3	Q9HC58	644 aa		11.38	□□□□□ -0.59
HM13-224	ENST00000498035	FOSB	P53539	338 aa		11.37	□□□□□ -0.59
HM13-224	ENST00000498035	SPINK5	Q9NQ38	1064 aa	Predicted RBP	11.37	□□□□□ -0.59
HM13-224	ENST00000498035	EFCAB2	Q5VUJ9	269 aa		11.37	□□□□□ -0.59
HM13-224	ENST00000498035	SPTY2D1	Q68D10	685 aa	Predicted RBP	11.37	□□□□□ -0.59
HM13-224	ENST00000498035	GPBP1L1	Q9HC44	474 aa	Predicted RBP	11.37	□□□□□ -0.59
HM13-224	ENST00000498035	SNAPC4	Q5SXM2	1469 aa		11.36	□□□□□ -0.59
HM13-224	ENST00000498035	PPP1R1B	Q9UD71	204 aa	Predicted RBP	11.36	□□□□□ -0.59
HM13-224	ENST00000498035	CUL7	Q14999	1698 aa		11.35	□□□□□ -0.59
HM13-224	ENST00000498035	RBM27	Q9P2N5	1060 aa	Known RBP	11.35	□□□□□ -0.59
HM13-224	ENST00000498035	STAG3	Q9UJ98	1225 aa		11.35	□□□□□ -0.59
HM13-224	ENST00000498035	MARCH6	O60337	910 aa		11.35	□□□□□ -0.59
HM13-224	ENST00000498035	WDR70	Q9NW82	654 aa		11.35	□□□□□ -0.59
HM13-224	ENST00000498035	PCF11	O94913	1555 aa	Known RBP	11.35	□□□□□ -0.59
HM13-224	ENST00000498035	IFNLR1	Q8IU57	520 aa	Predicted RBP	11.35	□□□□□ -0.59
HM13-224	ENST00000498035	RBM26	Q5T8P6	1007 aa	Known RBP	11.34	□□□□□ -0.59
HM13-224	ENST00000498035	MYH16	Q9H6N6	1097 aa		11.34	□□□□□ -0.59
HM13-224	ENST00000498035	MYCN	P04198	464 aa	Predicted RBP	11.34	□□□□□ -0.59
HM13-224	ENST00000498035	ESF1	Q9H501	851 aa	Known RBP	11.34	□□□□□ -0.59
HM13-224	ENST00000498035	UACA	Q9BZF9	1416 aa		11.34	□□□□□ -0.59
HM13-224	ENST00000498035	APBB1IP	Q7Z5R6	666 aa	Predicted RBP	11.32	□□□□□ -0.6
HM13-224	ENST00000498035	IRX3	P78415	501 aa	Predicted RBP	11.32	□□□□□ -0.6
HM13-224	ENST00000498035	SENP3-EIF4A1	A0A087X0R7	540 aa		11.32	□□□□□ -0.6
HM13-224	ENST00000498035	MKRN3	Q13064	507 aa	Known RBP	11.32	□□□□□ -0.6
HM13-224	ENST00000498035	HSP90AA2P	Q14568	343 aa	Predicted RBP	11.32	□□□□□ -0.6
HM13-224	ENST00000498035	CCER2	I3L3R5	266 aa		11.31	□□□□□ -0.6
HM13-224	ENST00000498035	ZNF608	Q9ULD9	1512 aa	Predicted RBP	11.31	□□□□□ -0.6
HM13-224	ENST00000498035	RRP9	O43818	475 aa	Known RBP	11.31	□□□□□ -0.6
HM13-224	ENST00000498035	PEX14	O75381	377 aa		11.31	□□□□□ -0.6
HM13-224	ENST00000498035	MPND	Q8N594	471 aa		11.31	□□□□□ -0.6
HM13-224	ENST00000498035	STK24	Q9Y6E0	443 aa		11.31	□□□□□ -0.6
HM13-224	ENST00000498035	MAP3K1	Q13233	1512 aa		11.31	□□□□□ -0.6
HM13-224	ENST00000498035	KIAA0586	Q9BVV6	1533 aa		11.31	□□□□□ -0.6
HM13-224	ENST00000498035	SENP3	Q9H4L4	574 aa	Predicted RBP	11.31	□□□□□ -0.6
HM13-224	ENST00000498035	ECM2	O94769	699 aa	Predicted RBP	11.3	□□□□□ -0.6
HM13-224	ENST00000498035	EHBP1L1	Q8N3D4	1523 aa		11.3	□□□□□ -0.6
HM13-224	ENST00000498035	ARMCX6	Q7L4S7	300 aa		11.29	□□□□□ -0.6

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