RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 CCDC27Q2M243 656 aa7.17□□□□□ -1.26
USF3-204ENST00000496826 POLR3GO15318 223 aaPredicted RBP7.17□□□□□ -1.26
USF3-204ENST00000496826 SLU7O95391 586 aaKnown RBP7.16□□□□□ -1.26
USF3-204ENST00000496826 CCDC43Q96MW1 224 aaKnown RBP7.16□□□□□ -1.26
USF3-204ENST00000496826 TPD52L1Q16890 204 aaPredicted RBP7.16□□□□□ -1.26
USF3-204ENST00000496826 CNGA1P29973 690 aa7.16□□□□□ -1.26
USF3-204ENST00000496826 PRPF31Q8WWY3 499 aaKnown RBP7.15□□□□□ -1.26
USF3-204ENST00000496826 HSP90B2PQ58FF3 399 aa7.15□□□□□ -1.26
USF3-204ENST00000496826 CLASRPQ8N2M8 674 aaKnown RBP7.15□□□□□ -1.26
USF3-204ENST00000496826 TPRNQ4KMQ1 711 aa7.15□□□□□ -1.26
USF3-204ENST00000496826 HSCBQ8IWL3 235 aa7.15□□□□□ -1.26
USF3-204ENST00000496826 GOLGA6L9A6NEM1 432 aa7.15□□□□□ -1.27
USF3-204ENST00000496826 CCDC6Q16204 474 aa7.14□□□□□ -1.27
USF3-204ENST00000496826 SMC4Q9NTJ3 1288 aa7.14□□□□□ -1.27
USF3-204ENST00000496826 IRX6P78412 446 aaPredicted RBP7.14□□□□□ -1.27
USF3-204ENST00000496826 CCDC91Q7Z6B0 441 aa7.14□□□□□ -1.27
USF3-204ENST00000496826 NOP2P46087 812 aaKnown RBP7.14□□□□□ -1.27
USF3-204ENST00000496826 CEP112Q8N8E3 955 aa7.14□□□□□ -1.27
USF3-204ENST00000496826 SEPT7Q16181 437 aaKnown RBP7.14□□□□□ -1.27
USF3-204ENST00000496826 HOMER1Q86YM7 354 aa7.14□□□□□ -1.27
USF3-204ENST00000496826 ATP6V1E1P36543 226 aa7.13□□□□□ -1.27
USF3-204ENST00000496826 RAB3IL1Q8TBN0 382 aa7.13□□□□□ -1.27
USF3-204ENST00000496826 PATL2C9JE40 543 aaKnown RBP7.13□□□□□ -1.27
USF3-204ENST00000496826 SEPT6Q14141 434 aa7.13□□□□□ -1.27
USF3-204ENST00000496826 FAM114A1Q8IWE2 563 aa7.13□□□□□ -1.27
USF3-204ENST00000496826 HOMER2Q9NSB8 354 aa7.13□□□□□ -1.27
USF3-204ENST00000496826 TAF7LQ5H9L4 462 aa7.13□□□□□ -1.27
USF3-204ENST00000496826 MTERF4Q7Z6M4 381 aaKnown RBP7.13□□□□□ -1.27
USF3-204ENST00000496826 LUC7LQ9NQ29 371 aaKnown RBP7.13□□□□□ -1.27
USF3-204ENST00000496826 TRIM34Q9BYJ4 488 aa7.12□□□□□ -1.27
USF3-204ENST00000496826 TRIM35Q9UPQ4 493 aa7.12□□□□□ -1.27
USF3-204ENST00000496826 H0YHG0 523 aa7.12□□□□□ -1.27
USF3-204ENST00000496826 SP100P23497 879 aaPredicted RBP7.12□□□□□ -1.27
USF3-204ENST00000496826 HDGFP51858 240 aaKnown RBP7.12□□□□□ -1.27
USF3-204ENST00000496826 GIGYF2Q6Y7W6 1299 aaKnown RBP7.12□□□□□ -1.27
USF3-204ENST00000496826 NCAPGQ9BPX3 1015 aa7.12□□□□□ -1.27
USF3-204ENST00000496826 CCDC39Q9UFE4 941 aa7.12□□□□□ -1.27
USF3-204ENST00000496826 POLE3Q9NRF9 147 aa7.12□□□□□ -1.27
USF3-204ENST00000496826 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.12□□□□□ -1.27
USF3-204ENST00000496826 NUDCQ9Y266 331 aa7.12□□□□□ -1.27
USF3-204ENST00000496826 TMCO5BA8MYB1 307 aa7.12□□□□□ -1.27
USF3-204ENST00000496826 PPP1R9BQ96SB3 815 aa7.12□□□□□ -1.27
USF3-204ENST00000496826 AXDND1Q5T1B0 1012 aaPredicted RBP7.11□□□□□ -1.27
USF3-204ENST00000496826 TMC1Q8TDI8 760 aa7.11□□□□□ -1.27
USF3-204ENST00000496826 ATP6V1DQ9Y5K8 247 aa7.11□□□□□ -1.27
USF3-204ENST00000496826 GOLGA6L10A0A0M3HER8 536 aa7.11□□□□□ -1.27
USF3-204ENST00000496826 CCDC66A2RUB6 948 aa7.11□□□□□ -1.27
USF3-204ENST00000496826 NASPP49321 788 aaPredicted RBP7.11□□□□□ -1.27
USF3-204ENST00000496826 NOL10Q9BSC4 688 aaKnown RBP7.11□□□□□ -1.27
USF3-204ENST00000496826 RALBP1Q15311 655 aa7.11□□□□□ -1.27
USF3-204ENST00000496826 CHMP5Q9NZZ3 219 aa7.11□□□□□ -1.27
USF3-204ENST00000496826 NOC2LQ9Y3T9 749 aaKnown RBP7.11□□□□□ -1.27
USF3-204ENST00000496826 GOLGA6L10A6NI86 522 aa7.1□□□□□ -1.27
USF3-204ENST00000496826 HSP90AB4PQ58FF6 505 aa7.1□□□□□ -1.27
USF3-204ENST00000496826 GOLGA6L19H0YKK7 550 aa7.1□□□□□ -1.27
USF3-204ENST00000496826 HSP90AB2PQ58FF8 381 aa7.1□□□□□ -1.27
USF3-204ENST00000496826 CEP63Q96MT8 703 aa7.1□□□□□ -1.27
USF3-204ENST00000496826 SOGA3Q5TF21 947 aa7.1□□□□□ -1.27
USF3-204ENST00000496826 SLC26A8Q96RN1 970 aa7.1□□□□□ -1.27
USF3-204ENST00000496826 BCL2L13Q9BXK5 485 aa7.1□□□□□ -1.27
USF3-204ENST00000496826 PABPN1LA6NDY0 278 aaKnown RBP7.1□□□□□ -1.27
USF3-204ENST00000496826 ARHGAP25P42331 645 aa7.1□□□□□ -1.27
USF3-204ENST00000496826 VPS53Q5VIR6 699 aa7.1□□□□□ -1.27
USF3-204ENST00000496826 PDIA4P13667 645 aaKnown RBP7.09□□□□□ -1.27
USF3-204ENST00000496826 FBXO3Q9UK99 471 aa7.09□□□□□ -1.27
USF3-204ENST00000496826 VSIG10Q8N0Z9 540 aa7.09□□□□□ -1.27
USF3-204ENST00000496826 LETM1O95202 739 aaPredicted RBP7.09□□□□□ -1.27
USF3-204ENST00000496826 SSFA2P28290 1259 aa7.09□□□□□ -1.27
USF3-204ENST00000496826 AKAP17AQ02040 695 aaKnown RBP7.09□□□□□ -1.27
USF3-204ENST00000496826 HOOK3Q86VS8 718 aa7.09□□□□□ -1.27
USF3-204ENST00000496826 PMFBP1Q8TBY8 1022 aa7.09□□□□□ -1.27
USF3-204ENST00000496826 RNF20Q5VTR2 975 aa7.09□□□□□ -1.27
USF3-204ENST00000496826 SMC6Q96SB8 1091 aa7.09□□□□□ -1.27
USF3-204ENST00000496826 NBR1Q14596 966 aa7.09□□□□□ -1.28
USF3-204ENST00000496826 SMC1AQ14683 1233 aaKnown RBP7.09□□□□□ -1.28
USF3-204ENST00000496826 ERLIN1O75477 346 aa7.08□□□□□ -1.28
USF3-204ENST00000496826 CPLX2Q6PUV4 134 aaKnown RBP7.08□□□□□ -1.28
USF3-204ENST00000496826 KIF5CO60282 957 aa7.08□□□□□ -1.28
USF3-204ENST00000496826 CCDC172P0C7W6 258 aa7.08□□□□□ -1.28
USF3-204ENST00000496826 LRRC45Q96CN5 670 aa7.08□□□□□ -1.28
USF3-204ENST00000496826 PPP1R15AO75807 674 aaPredicted RBP7.07□□□□□ -1.28
USF3-204ENST00000496826 MAP3K7CLP57077 242 aa7.07□□□□□ -1.28
USF3-204ENST00000496826 USH1CQ9Y6N9 552 aa7.07□□□□□ -1.28
USF3-204ENST00000496826 MRS2Q9HD23 443 aa7.07□□□□□ -1.28
USF3-204ENST00000496826 ZBTB7CA1YPR0 619 aa7.07□□□□□ -1.28
USF3-204ENST00000496826 TAF3Q5VWG9 929 aa7.07□□□□□ -1.28
USF3-204ENST00000496826 GOLGA1Q92805 767 aa7.07□□□□□ -1.28
USF3-204ENST00000496826 KIAA0754O94854 1291 aa7.06□□□□□ -1.28
USF3-204ENST00000496826 BMS1Q14692 1282 aaKnown RBP7.06□□□□□ -1.28
USF3-204ENST00000496826 DZIP1LQ8IYY4 767 aaKnown RBP7.06□□□□□ -1.28
USF3-204ENST00000496826 TMCO3Q6UWJ1 677 aa7.06□□□□□ -1.28
USF3-204ENST00000496826 DAAM2Q86T65 1068 aa7.06□□□□□ -1.28
USF3-204ENST00000496826 CCAR1Q8IX12 1150 aaKnown RBP7.06□□□□□ -1.28
USF3-204ENST00000496826 SEPT8Q92599 483 aa7.06□□□□□ -1.28
USF3-204ENST00000496826 PLPPR3Q6T4P5 718 aa7.06□□□□□ -1.28
USF3-204ENST00000496826 ZNF526Q8TF50 670 aaPredicted RBP7.05□□□□□ -1.28
USF3-204ENST00000496826 SYCP1Q15431 976 aa7.05□□□□□ -1.28
USF3-204ENST00000496826 GIMAP7Q8NHV1 300 aa7.05□□□□□ -1.28
USF3-204ENST00000496826 DEKP35659 375 aaKnown RBP7.05□□□□□ -1.28
USF3-204ENST00000496826 TXLNAP40222 546 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms