RNA–Protein interactions for RNA: ENST00000496462.1

U2AF1-212, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 1 (best)

Gene U2AF1, Length 3,973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-212ENST00000496462 DUOX2Q9NRD8 1548 aa12.41□□□□□ -0.42
U2AF1-212ENST00000496462 RIMS1Q86UR5 1692 aaKnown RBP12.4□□□□□ -0.43
U2AF1-212ENST00000496462 ZEB1P37275 1124 aaPredicted RBP12.39□□□□□ -0.43
U2AF1-212ENST00000496462 ERBINQ96RT1 1412 aa12.39□□□□□ -0.43
U2AF1-212ENST00000496462 EID1Q9Y6B2 187 aa12.39□□□□□ -0.43
U2AF1-212ENST00000496462 NCOA1Q15788 1441 aa12.39□□□□□ -0.43
U2AF1-212ENST00000496462 BCORL1Q5H9F3 1711 aa12.39□□□□□ -0.43
U2AF1-212ENST00000496462 KDM5CP41229 1560 aa12.38□□□□□ -0.43
U2AF1-212ENST00000496462 DIP2CQ9Y2E4 1556 aa12.38□□□□□ -0.43
U2AF1-212ENST00000496462 PKD2Q13563 968 aa12.37□□□□□ -0.43
U2AF1-212ENST00000496462 MBD5Q9P267 1494 aa12.36□□□□□ -0.43
U2AF1-212ENST00000496462 ABCA6Q8N139 1617 aa12.36□□□□□ -0.43
U2AF1-212ENST00000496462 ADAMTSL3P82987 1691 aa12.35□□□□□ -0.43
U2AF1-212ENST00000496462 HFM1A2PYH4 1435 aa12.35□□□□□ -0.43
U2AF1-212ENST00000496462 MPHOSPH9Q99550 1183 aa12.35□□□□□ -0.43
U2AF1-212ENST00000496462 SLC52A1Q9NWF4 448 aa12.34□□□□□ -0.43
U2AF1-212ENST00000496462 DNMT1P26358 1616 aaKnown RBP12.34□□□□□ -0.43
U2AF1-212ENST00000496462 RAB3GAP2Q9H2M9 1393 aa12.34□□□□□ -0.43
U2AF1-212ENST00000496462 THEMISQ8N1K5 641 aaPredicted RBP12.34□□□□□ -0.43
U2AF1-212ENST00000496462 ZMYM3Q14202 1370 aa12.33□□□□□ -0.43
U2AF1-212ENST00000496462 NEUROD1Q13562 356 aa12.33□□□□□ -0.44
U2AF1-212ENST00000496462 KIDINS220Q9ULH0 1771 aa12.33□□□□□ -0.44
U2AF1-212ENST00000496462 ADGRL2O95490 1459 aa12.32□□□□□ -0.44
U2AF1-212ENST00000496462 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.32□□□□□ -0.44
U2AF1-212ENST00000496462 UHRF1BP1Q6BDS2 1440 aa12.32□□□□□ -0.44
U2AF1-212ENST00000496462 FBXO31Q5XUX0 539 aaPredicted RBP12.31□□□□□ -0.44
U2AF1-212ENST00000496462 SIGLEC1Q9BZZ2 1709 aa12.31□□□□□ -0.44
U2AF1-212ENST00000496462 FER1L4A9Z1Z3 1794 aa12.31□□□□□ -0.44
U2AF1-212ENST00000496462 TONSLQ96HA7 1378 aa12.31□□□□□ -0.44
U2AF1-212ENST00000496462 DMRT2Q9Y5R5 561 aa12.29□□□□□ -0.44
U2AF1-212ENST00000496462 CLSPNQ9HAW4 1339 aa12.28□□□□□ -0.44
U2AF1-212ENST00000496462 MAST1Q9Y2H9 1570 aa12.28□□□□□ -0.44
U2AF1-212ENST00000496462 NAIPQ13075 1403 aa12.28□□□□□ -0.44
U2AF1-212ENST00000496462 AGLP35573 1532 aa12.28□□□□□ -0.44
U2AF1-212ENST00000496462 STAC3Q96MF2 364 aa12.28□□□□□ -0.44
U2AF1-212ENST00000496462 CCDC144AA2RUR9 1427 aa12.27□□□□□ -0.44
U2AF1-212ENST00000496462 LMTK3Q96Q04 1460 aa12.27□□□□□ -0.45
U2AF1-212ENST00000496462 TNRQ92752 1358 aa12.27□□□□□ -0.45
U2AF1-212ENST00000496462 INO80Q9ULG1 1556 aaPredicted RBP12.26□□□□□ -0.45
U2AF1-212ENST00000496462 RGL3Q3MIN7 710 aa12.26□□□□□ -0.45
U2AF1-212ENST00000496462 VGFO15240 615 aaPredicted RBP12.25□□□□□ -0.45
U2AF1-212ENST00000496462 ANKLE2Q86XL3 938 aa12.25□□□□□ -0.45
U2AF1-212ENST00000496462 SENP3Q9H4L4 574 aaPredicted RBP12.25□□□□□ -0.45
U2AF1-212ENST00000496462 ADGBQ8N7X0 1667 aa12.24□□□□□ -0.45
U2AF1-212ENST00000496462 PLXNC1O60486 1568 aa12.24□□□□□ -0.45
U2AF1-212ENST00000496462 REREQ9P2R6 1566 aa12.24□□□□□ -0.45
U2AF1-212ENST00000496462 NCKAP5LQ9HCH0 1330 aa12.23□□□□□ -0.45
U2AF1-212ENST00000496462 FAM135AQ9P2D6 1515 aa12.23□□□□□ -0.45
U2AF1-212ENST00000496462 ILDR1Q86SU0 546 aaPredicted RBP12.23□□□□□ -0.45
U2AF1-212ENST00000496462 TIMELESSQ9UNS1 1208 aa12.22□□□□□ -0.45
U2AF1-212ENST00000496462 SETD1BQ9UPS6 1966 aaKnown RBP12.22□□□□□ -0.45
U2AF1-212ENST00000496462 C14orf37Q86TY3 774 aa12.21□□□□□ -0.45
U2AF1-212ENST00000496462 KDM2AQ9Y2K7 1162 aa12.21□□□□□ -0.45
U2AF1-212ENST00000496462 RPGRIP1LQ68CZ1 1315 aa12.2□□□□□ -0.46
U2AF1-212ENST00000496462 PTPRKQ15262 1439 aa12.2□□□□□ -0.46
U2AF1-212ENST00000496462 KDM5DQ9BY66 1539 aa12.2□□□□□ -0.46
U2AF1-212ENST00000496462 CLTCQ00610 1675 aaKnown RBP12.19□□□□□ -0.46
U2AF1-212ENST00000496462 TXNDC2Q86VQ3 553 aa12.19□□□□□ -0.46
U2AF1-212ENST00000496462 SLC24A1O60721 1099 aa12.18□□□□□ -0.46
U2AF1-212ENST00000496462 C3P01024 1663 aa12.17□□□□□ -0.46
U2AF1-212ENST00000496462 EIF2AK4Q9P2K8 1649 aaKnown RBP12.17□□□□□ -0.46
U2AF1-212ENST00000496462 NPATQ14207 1427 aa12.17□□□□□ -0.46
U2AF1-212ENST00000496462 RPRD2Q5VT52 1461 aaKnown RBP12.16□□□□□ -0.46
U2AF1-212ENST00000496462 FOXD1Q16676 465 aa12.16□□□□□ -0.46
U2AF1-212ENST00000496462 DCAF11Q8TEB1 546 aa12.16□□□□□ -0.46
U2AF1-212ENST00000496462 SCAF1Q9H7N4 1312 aaKnown RBP12.15□□□□□ -0.46
U2AF1-212ENST00000496462 CERKQ8TCT0 537 aa12.15□□□□□ -0.46
U2AF1-212ENST00000496462 CFAP65Q6ZU64 1925 aaKnown RBP12.14□□□□□ -0.47
U2AF1-212ENST00000496462 IDI1Q13907 227 aa12.13□□□□□ -0.47
U2AF1-212ENST00000496462 ARHGAP31Q2M1Z3 1444 aa12.13□□□□□ -0.47
U2AF1-212ENST00000496462 PREX1Q8TCU6 1659 aa12.13□□□□□ -0.47
U2AF1-212ENST00000496462 ANKRD30BQ9BXX2 1392 aa12.13□□□□□ -0.47
U2AF1-212ENST00000496462 POGKQ9P215 609 aa12.12□□□□□ -0.47
U2AF1-212ENST00000496462 CROCC2H7BZ55 1655 aa12.12□□□□□ -0.47
U2AF1-212ENST00000496462 NLRP1Q9C000 1473 aa12.12□□□□□ -0.47
U2AF1-212ENST00000496462 PZPP20742 1482 aa12.12□□□□□ -0.47
U2AF1-212ENST00000496462 ZNF335Q9H4Z2 1342 aaPredicted RBP12.12□□□□□ -0.47
U2AF1-212ENST00000496462 CAMSAP1Q5T5Y3 1602 aa12.11□□□□□ -0.47
U2AF1-212ENST00000496462 FBXO41Q8TF61 875 aa12.11□□□□□ -0.47
U2AF1-212ENST00000496462 ABCC3O15438 1527 aa12.1□□□□□ -0.47
U2AF1-212ENST00000496462 NUTM2DQ5VT03 806 aaPredicted RBP12.09□□□□□ -0.47
U2AF1-212ENST00000496462 A2ML1A8K2U0 1454 aa12.09□□□□□ -0.47
U2AF1-212ENST00000496462 GCC2Q8IWJ2 1684 aa12.08□□□□□ -0.48
U2AF1-212ENST00000496462 CEP170BQ9Y4F5 1589 aaPredicted RBP12.08□□□□□ -0.48
U2AF1-212ENST00000496462 DHX57Q6P158 1386 aaKnown RBP12.08□□□□□ -0.48
U2AF1-212ENST00000496462 SIN3AQ96ST3 1273 aa12.07□□□□□ -0.48
U2AF1-212ENST00000496462 UBAP1LF5GYI3 381 aa12.07□□□□□ -0.48
U2AF1-212ENST00000496462 CDCA8Q53HL2 280 aa12.07□□□□□ -0.48
U2AF1-212ENST00000496462 MROH2AA6NES4 1674 aa12.07□□□□□ -0.48
U2AF1-212ENST00000496462 UGGT1Q9NYU2 1555 aa12.06□□□□□ -0.48
U2AF1-212ENST00000496462 ERVK-7P63135 1459 aa12.06□□□□□ -0.48
U2AF1-212ENST00000496462 PRDM15P57071 1507 aaPredicted RBP12.06□□□□□ -0.48
U2AF1-212ENST00000496462 LMTK2Q8IWU2 1503 aa12.06□□□□□ -0.48
U2AF1-212ENST00000496462 ZC3H13Q5T200 1668 aaKnown RBP12.06□□□□□ -0.48
U2AF1-212ENST00000496462 EIF3AQ14152 1382 aaKnown RBP12.05□□□□□ -0.48
U2AF1-212ENST00000496462 PIP4K2BP78356 416 aa12.05□□□□□ -0.48
U2AF1-212ENST00000496462 SLC26A8Q96RN1 970 aa12.05□□□□□ -0.48
U2AF1-212ENST00000496462 POLR3GLQ9BT43 218 aa12.05□□□□□ -0.48
U2AF1-212ENST00000496462 CARD11Q9BXL7 1154 aa12.05□□□□□ -0.48
U2AF1-212ENST00000496462 MYO3AQ8NEV4 1616 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms