RNA–Protein interactions for RNA: ENST00000496385.5

HPS4-217, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 2,772 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-217ENST00000496385 ITSN2Q9NZM3 1697 aa12.1□□□□□ -0.47
HPS4-217ENST00000496385 SYCP2Q9BX26 1530 aa12.1□□□□□ -0.47
HPS4-217ENST00000496385 TONSLQ96HA7 1378 aa12.09□□□□□ -0.47
HPS4-217ENST00000496385 TRAPPC8Q9Y2L5 1435 aa12.09□□□□□ -0.47
HPS4-217ENST00000496385 CAMSAP2Q08AD1 1489 aa12.08□□□□□ -0.48
HPS4-217ENST00000496385 DENND4BO75064 1496 aaPredicted RBP12.08□□□□□ -0.48
HPS4-217ENST00000496385 PLPPR3Q6T4P5 718 aa12.07□□□□□ -0.48
HPS4-217ENST00000496385 ARAP3Q8WWN8 1544 aa12.07□□□□□ -0.48
HPS4-217ENST00000496385 CFAP74Q9C0B2 1584 aa12.07□□□□□ -0.48
HPS4-217ENST00000496385 HIRIP3Q9BW71 556 aaPredicted RBP12.07□□□□□ -0.48
HPS4-217ENST00000496385 FGD6Q6ZV73 1430 aa12.07□□□□□ -0.48
HPS4-217ENST00000496385 ABCC1P33527 1531 aa12.07□□□□□ -0.48
HPS4-217ENST00000496385 CNTLNQ9NXG0 1405 aa12.07□□□□□ -0.48
HPS4-217ENST00000496385 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.07□□□□□ -0.48
HPS4-217ENST00000496385 FRMPD1Q5SYB0 1578 aa12.06□□□□□ -0.48
HPS4-217ENST00000496385 DAXXQ9UER7 740 aaPredicted RBP12.06□□□□□ -0.48
HPS4-217ENST00000496385 PTPN23Q9H3S7 1636 aa12.05□□□□□ -0.48
HPS4-217ENST00000496385 POGZQ7Z3K3 1410 aa12.05□□□□□ -0.48
HPS4-217ENST00000496385 NUDCQ9Y266 331 aa12.05□□□□□ -0.48
HPS4-217ENST00000496385 LAS1LQ9Y4W2 734 aaKnown RBP12.05□□□□□ -0.48
HPS4-217ENST00000496385 CHIC2Q9UKJ5 165 aa12.04□□□□□ -0.48
HPS4-217ENST00000496385 RICTORQ6R327 1708 aa12.04□□□□□ -0.48
HPS4-217ENST00000496385 BACH2Q9BYV9 841 aa12.03□□□□□ -0.48
HPS4-217ENST00000496385 ZMYND15Q9H091 742 aa12.03□□□□□ -0.48
HPS4-217ENST00000496385 YEATS2Q9ULM3 1422 aa12.03□□□□□ -0.48
HPS4-217ENST00000496385 PRKRIP1Q9H875 184 aaPredicted RBP12.02□□□□□ -0.48
HPS4-217ENST00000496385 MBD5Q9P267 1494 aa12.02□□□□□ -0.48
HPS4-217ENST00000496385 MIA2Q96PC5 1412 aa12.02□□□□□ -0.49
HPS4-217ENST00000496385 PDE4AP27815 886 aa12.02□□□□□ -0.49
HPS4-217ENST00000496385 ZNF518AQ6AHZ1 1483 aa12.02□□□□□ -0.49
HPS4-217ENST00000496385 SPAG9O60271 1321 aaKnown RBP12.01□□□□□ -0.49
HPS4-217ENST00000496385 NFKBIBQ15653 356 aa12.01□□□□□ -0.49
HPS4-217ENST00000496385 RRP9O43818 475 aaKnown RBP12.01□□□□□ -0.49
HPS4-217ENST00000496385 FRAT1Q92837 279 aaPredicted RBP12.01□□□□□ -0.49
HPS4-217ENST00000496385 KIAA1107Q9UPP5 1409 aa12□□□□□ -0.49
HPS4-217ENST00000496385 MRS2Q9HD23 443 aa12□□□□□ -0.49
HPS4-217ENST00000496385 PLEKHH2Q8IVE3 1493 aa11.99□□□□□ -0.49
HPS4-217ENST00000496385 PODXL2Q9NZ53 605 aa11.99□□□□□ -0.49
HPS4-217ENST00000496385 TSPY4P0CV99 314 aa11.98□□□□□ -0.49
HPS4-217ENST00000496385 TSPY10P0CW01 314 aa11.98□□□□□ -0.49
HPS4-217ENST00000496385 CCDC141Q6ZP82 1450 aa11.98□□□□□ -0.49
HPS4-217ENST00000496385 ARID4BQ4LE39 1312 aaPredicted RBP11.98□□□□□ -0.49
HPS4-217ENST00000496385 MLECQ14165 292 aa11.98□□□□□ -0.49
HPS4-217ENST00000496385 FAM9BQ8IZU0 186 aa11.98□□□□□ -0.49
HPS4-217ENST00000496385 VSIG10Q8N0Z9 540 aa11.98□□□□□ -0.49
HPS4-217ENST00000496385 ABCC5O15440 1437 aa11.98□□□□□ -0.49
HPS4-217ENST00000496385 TCOF1Q13428 1488 aaKnown RBP11.97□□□□□ -0.49
HPS4-217ENST00000496385 KDM5CP41229 1560 aa11.97□□□□□ -0.49
HPS4-217ENST00000496385 HECW2Q9P2P5 1572 aa11.97□□□□□ -0.49
HPS4-217ENST00000496385 ZFYVE16Q7Z3T8 1539 aa11.97□□□□□ -0.49
HPS4-217ENST00000496385 AEBP2Q6ZN18 517 aaPredicted RBP11.96□□□□□ -0.49
HPS4-217ENST00000496385 NPM2Q86SE8 214 aaKnown RBP11.96□□□□□ -0.49
HPS4-217ENST00000496385 RRP7BPQ9NSQ0 103 aa11.96□□□□□ -0.49
HPS4-217ENST00000496385 KIDINS220Q9ULH0 1771 aa11.96□□□□□ -0.49
HPS4-217ENST00000496385 DAPK1P53355 1430 aa11.96□□□□□ -0.49
HPS4-217ENST00000496385 PTPRKQ15262 1439 aa11.96□□□□□ -0.5
HPS4-217ENST00000496385 CCDC184Q52MB2 194 aa11.96□□□□□ -0.5
HPS4-217ENST00000496385 ATP7AQ04656 1500 aa11.95□□□□□ -0.5
HPS4-217ENST00000496385 ABCA6Q8N139 1617 aa11.95□□□□□ -0.5
HPS4-217ENST00000496385 C9orf84Q5VXU9 1444 aa11.95□□□□□ -0.5
HPS4-217ENST00000496385 ZMYM4Q5VZL5 1548 aa11.95□□□□□ -0.5
HPS4-217ENST00000496385 EIF4G2P78344 907 aaKnown RBP eCLIP11.95□□□□□ -0.5
HPS4-217ENST00000496385 SIGLEC1Q9BZZ2 1709 aa11.94□□□□□ -0.5
HPS4-217ENST00000496385 ARHGEF5Q12774 1597 aa11.94□□□□□ -0.5
HPS4-217ENST00000496385 NCOA1Q15788 1441 aa11.94□□□□□ -0.5
HPS4-217ENST00000496385 DNMT1P26358 1616 aaKnown RBP11.94□□□□□ -0.5
HPS4-217ENST00000496385 ARHGEF40Q8TER5 1519 aa11.94□□□□□ -0.5
HPS4-217ENST00000496385 HSPA5P11021 654 aaKnown RBP11.93□□□□□ -0.5
HPS4-217ENST00000496385 HSP90AA2PQ14568 343 aaPredicted RBP11.93□□□□□ -0.5
HPS4-217ENST00000496385 DIP2CQ9Y2E4 1556 aa11.93□□□□□ -0.5
HPS4-217ENST00000496385 MLH3Q9UHC1 1453 aa11.93□□□□□ -0.5
HPS4-217ENST00000496385 INO80Q9ULG1 1556 aaPredicted RBP11.93□□□□□ -0.5
HPS4-217ENST00000496385 RSPH4AQ5TD94 716 aa11.92□□□□□ -0.5
HPS4-217ENST00000496385 POLR1AO95602 1720 aaPredicted RBP11.92□□□□□ -0.5
HPS4-217ENST00000496385 CCDC7Q96M83 1385 aa11.92□□□□□ -0.5
HPS4-217ENST00000496385 CROCC2H7BZ55 1655 aa11.92□□□□□ -0.5
HPS4-217ENST00000496385 L1TD1Q5T7N2 865 aaKnown RBP11.91□□□□□ -0.5
HPS4-217ENST00000496385 ATP10AO60312 1499 aa11.91□□□□□ -0.5
HPS4-217ENST00000496385 MAGI2Q86UL8 1455 aa11.9□□□□□ -0.5
HPS4-217ENST00000496385 HSP90AA1P07900 732 aaKnown RBP11.9□□□□□ -0.51
HPS4-217ENST00000496385 KIF15Q9NS87 1388 aa11.89□□□□□ -0.51
HPS4-217ENST00000496385 GGT6Q6P531 493 aa11.89□□□□□ -0.51
HPS4-217ENST00000496385 HFM1A2PYH4 1435 aa11.88□□□□□ -0.51
HPS4-217ENST00000496385 ADGBQ8N7X0 1667 aa11.88□□□□□ -0.51
HPS4-217ENST00000496385 A2MP01023 1474 aa11.88□□□□□ -0.51
HPS4-217ENST00000496385 KIF3BO15066 747 aa11.88□□□□□ -0.51
HPS4-217ENST00000496385 DCAF11Q8TEB1 546 aa11.88□□□□□ -0.51
HPS4-217ENST00000496385 RTEL1-TNFRSF6BF6WH68 1400 aa11.87□□□□□ -0.51
HPS4-217ENST00000496385 ANKRD30AQ9BXX3 1397 aa11.87□□□□□ -0.51
HPS4-217ENST00000496385 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.86□□□□□ -0.516e-6■□□□□ 8.2
HPS4-217ENST00000496385 SHANK2Q9UPX8 1470 aa11.86□□□□□ -0.51
HPS4-217ENST00000496385 CENPJQ9HC77 1338 aaPredicted RBP11.86□□□□□ -0.51
HPS4-217ENST00000496385 CLCN1P35523 988 aa11.86□□□□□ -0.51
HPS4-217ENST00000496385 RRP1P56182 461 aaKnown RBP11.86□□□□□ -0.51
HPS4-217ENST00000496385 MAST1Q9Y2H9 1570 aa11.86□□□□□ -0.51
HPS4-217ENST00000496385 KDM4FA0A1W2PPD8 638 aa11.85□□□□□ -0.51
HPS4-217ENST00000496385 DHX29Q7Z478 1369 aaKnown RBP11.85□□□□□ -0.51
HPS4-217ENST00000496385 RRAGDQ9NQL2 400 aaPredicted RBP11.84□□□□□ -0.51
HPS4-217ENST00000496385 PNNQ9H307 717 aaKnown RBP11.84□□□□□ -0.51
HPS4-217ENST00000496385 PLXNC1O60486 1568 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms