RNA–Protein interactions for RNA: ENST00000496375.1

CXCL12-208, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 5

Gene CXCL12, Length 803 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-208ENST00000496375 LTBP4Q8N2S1 1624 aa22.68■■□□□ 1.22
CXCL12-208ENST00000496375 PLA2R1Q13018 1463 aa22.67■■□□□ 1.22
CXCL12-208ENST00000496375 FAM135AQ9P2D6 1515 aa22.67■■□□□ 1.22
CXCL12-208ENST00000496375 MYOM3Q5VTT5 1437 aa22.65■■□□□ 1.22
CXCL12-208ENST00000496375 WASHC2CQ9Y4E1 1318 aa22.65■■□□□ 1.22
CXCL12-208ENST00000496375 MAST1Q9Y2H9 1570 aa22.65■■□□□ 1.22
CXCL12-208ENST00000496375 A2ML1A8K2U0 1454 aa22.65■■□□□ 1.22
CXCL12-208ENST00000496375 MIA2Q96PC5 1412 aa22.65■■□□□ 1.22
CXCL12-208ENST00000496375 PKD2Q13563 968 aa22.64■■□□□ 1.21
CXCL12-208ENST00000496375 FBXO31Q5XUX0 539 aaPredicted RBP22.64■■□□□ 1.21
CXCL12-208ENST00000496375 PZPP20742 1482 aa22.64■■□□□ 1.21
CXCL12-208ENST00000496375 TCOF1Q13428 1488 aaKnown RBP22.63■■□□□ 1.21
CXCL12-208ENST00000496375 TNRQ92752 1358 aa22.63■■□□□ 1.21
CXCL12-208ENST00000496375 DNMT1P26358 1616 aaKnown RBP22.62■■□□□ 1.21
CXCL12-208ENST00000496375 RNF17Q9BXT8 1623 aaKnown RBP22.59■■□□□ 1.21
CXCL12-208ENST00000496375 IQSEC2Q5JU85 1478 aa22.58■■□□□ 1.2
CXCL12-208ENST00000496375 ZNF335Q9H4Z2 1342 aaPredicted RBP22.57■■□□□ 1.2
CXCL12-208ENST00000496375 APLP2Q06481 763 aa22.57■■□□□ 1.2
CXCL12-208ENST00000496375 EIF2AK4Q9P2K8 1649 aaKnown RBP22.56■■□□□ 1.2
CXCL12-208ENST00000496375 ABCC3O15438 1527 aa22.54■■□□□ 1.2
CXCL12-208ENST00000496375 ZC3H13Q5T200 1668 aaKnown RBP22.53■■□□□ 1.2
CXCL12-208ENST00000496375 POLR1AO95602 1720 aaPredicted RBP22.52■■□□□ 1.2
CXCL12-208ENST00000496375 PTPN23Q9H3S7 1636 aa22.52■■□□□ 1.2
CXCL12-208ENST00000496375 NLRP1Q9C000 1473 aa22.52■■□□□ 1.2
CXCL12-208ENST00000496375 MROH1Q8NDA8 1641 aa22.51■■□□□ 1.19
CXCL12-208ENST00000496375 DUOX2Q9NRD8 1548 aa22.51■■□□□ 1.19
CXCL12-208ENST00000496375 CROCC2H7BZ55 1655 aa22.5■■□□□ 1.19
CXCL12-208ENST00000496375 ABCC5O15440 1437 aa22.49■■□□□ 1.19
CXCL12-208ENST00000496375 NEURL4Q96JN8 1562 aa22.49■■□□□ 1.19
CXCL12-208ENST00000496375 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.49■■□□□ 1.19
CXCL12-208ENST00000496375 SHANK2Q9UPX8 1470 aa22.48■■□□□ 1.19
CXCL12-208ENST00000496375 UGGT1Q9NYU2 1555 aa22.48■■□□□ 1.19
CXCL12-208ENST00000496375 KIF15Q9NS87 1388 aa22.48■■□□□ 1.19
CXCL12-208ENST00000496375 CEP152O94986 1710 aa22.48■■□□□ 1.19
CXCL12-208ENST00000496375 THEMISQ8N1K5 641 aaPredicted RBP22.47■■□□□ 1.19
CXCL12-208ENST00000496375 SPATA31D1Q6ZQQ2 1576 aa22.46■■□□□ 1.19
CXCL12-208ENST00000496375 FGD6Q6ZV73 1430 aa22.46■■□□□ 1.19
CXCL12-208ENST00000496375 ANKLE2Q86XL3 938 aa22.45■■□□□ 1.18
CXCL12-208ENST00000496375 RRP7BPQ9NSQ0 103 aa22.45■■□□□ 1.18
CXCL12-208ENST00000496375 DAPK1P53355 1430 aa22.45■■□□□ 1.18
CXCL12-208ENST00000496375 ERVK-7P63135 1459 aa22.45■■□□□ 1.18
CXCL12-208ENST00000496375 ERBINQ96RT1 1412 aa22.43■■□□□ 1.18
CXCL12-208ENST00000496375 CFAP65Q6ZU64 1925 aaKnown RBP22.43■■□□□ 1.18
CXCL12-208ENST00000496375 UBAP1LF5GYI3 381 aa22.42■■□□□ 1.18
CXCL12-208ENST00000496375 PRDM15P57071 1507 aaPredicted RBP22.41■■□□□ 1.18
CXCL12-208ENST00000496375 DEPDC5O75140 1603 aa22.4■■□□□ 1.18
CXCL12-208ENST00000496375 NPHP4O75161 1426 aaPredicted RBP22.39■■□□□ 1.17
CXCL12-208ENST00000496375 MED14O60244 1454 aa22.38■■□□□ 1.17
CXCL12-208ENST00000496375 CPS1P31327 1500 aa22.37■■□□□ 1.17
CXCL12-208ENST00000496375 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.37■■□□□ 1.17
CXCL12-208ENST00000496375 CHIC2Q9UKJ5 165 aa22.37■■□□□ 1.17
CXCL12-208ENST00000496375 DISP3Q9P2K9 1392 aa22.37■■□□□ 1.17
CXCL12-208ENST00000496375 ARHGAP31Q2M1Z3 1444 aa22.36■■□□□ 1.17
CXCL12-208ENST00000496375 ANKRD30AQ9BXX3 1397 aa22.36■■□□□ 1.17
CXCL12-208ENST00000496375 VWDEQ8N2E2 1590 aa22.35■■□□□ 1.17
CXCL12-208ENST00000496375 IQGAP1P46940 1657 aa22.35■■□□□ 1.17
CXCL12-208ENST00000496375 UBR1Q8IWV7 1749 aa22.34■■□□□ 1.17
CXCL12-208ENST00000496375 KANK1Q14678 1352 aa22.32■■□□□ 1.16
CXCL12-208ENST00000496375 FAM50AQ14320 339 aaKnown RBP22.29■■□□□ 1.16
CXCL12-208ENST00000496375 ADGRL2O95490 1459 aa22.28■■□□□ 1.16
CXCL12-208ENST00000496375 LMTK2Q8IWU2 1503 aa22.27■■□□□ 1.16
CXCL12-208ENST00000496375 SCAF11Q99590 1463 aaKnown RBP22.27■■□□□ 1.16
CXCL12-208ENST00000496375 TOM1O60784 492 aa22.26■■□□□ 1.15
CXCL12-208ENST00000496375 SCAF1Q9H7N4 1312 aaKnown RBP22.26■■□□□ 1.15
CXCL12-208ENST00000496375 PIP4K2BP78356 416 aa22.25■■□□□ 1.15
CXCL12-208ENST00000496375 ARHGAP23Q9P227 1491 aa22.25■■□□□ 1.15
CXCL12-208ENST00000496375 SLIT1O75093 1534 aa22.25■■□□□ 1.15
CXCL12-208ENST00000496375 STRCP1A6NGW2 1772 aa22.25■■□□□ 1.15
CXCL12-208ENST00000496375 PIK3C2BO00750 1634 aa22.24■■□□□ 1.15
CXCL12-208ENST00000496375 ILDR2Q71H61 639 aa22.24■■□□□ 1.15
CXCL12-208ENST00000496375 LTKP29376 864 aa22.23■■□□□ 1.15
CXCL12-208ENST00000496375 TXNDC2Q86VQ3 553 aa22.23■■□□□ 1.15
CXCL12-208ENST00000496375 EFCAB6Q5THR3 1501 aa22.21■■□□□ 1.15
CXCL12-208ENST00000496375 STAG3Q9UJ98 1225 aa22.2■■□□□ 1.14
CXCL12-208ENST00000496375 EID1Q9Y6B2 187 aa22.2■■□□□ 1.14
CXCL12-208ENST00000496375 LRRC7Q96NW7 1537 aa22.2■■□□□ 1.14
CXCL12-208ENST00000496375 IDI1Q13907 227 aa22.19■■□□□ 1.14
CXCL12-208ENST00000496375 ANKRD50Q9ULJ7 1429 aa22.19■■□□□ 1.14
CXCL12-208ENST00000496375 SYNMO15061 1565 aa22.19■■□□□ 1.14
CXCL12-208ENST00000496375 TMEM2Q9UHN6 1383 aa22.18■■□□□ 1.14
CXCL12-208ENST00000496375 KDM5AP29375 1690 aaKnown RBP22.17■■□□□ 1.14
CXCL12-208ENST00000496375 HSPA1LP34931 641 aa22.17■■□□□ 1.14
CXCL12-208ENST00000496375 ALKQ9UM73 1620 aa22.17■■□□□ 1.14
CXCL12-208ENST00000496375 NOS1P29475 1434 aa22.16■■□□□ 1.14
CXCL12-208ENST00000496375 ADGRB3O60242 1522 aa22.12■■□□□ 1.13
CXCL12-208ENST00000496375 RPRD2Q5VT52 1461 aaKnown RBP22.11■■□□□ 1.13
CXCL12-208ENST00000496375 TET3O43151 1660 aa22.11■■□□□ 1.13
CXCL12-208ENST00000496375 SLC52A1Q9NWF4 448 aa22.1■■□□□ 1.13
CXCL12-208ENST00000496375 UNC13BO14795 1591 aa22.08■■□□□ 1.13
CXCL12-208ENST00000496375 SOCS7O14512 581 aa22.08■■□□□ 1.13
CXCL12-208ENST00000496375 ROCK1Q13464 1354 aa22.07■■□□□ 1.12
CXCL12-208ENST00000496375 GCC2Q8IWJ2 1684 aa22.07■■□□□ 1.12
CXCL12-208ENST00000496375 XIRP1Q702N8 1843 aaKnown RBP22.06■■□□□ 1.12
CXCL12-208ENST00000496375 SLC26A8Q96RN1 970 aa22.05■■□□□ 1.12
CXCL12-208ENST00000496375 MED1Q15648 1581 aaPredicted RBP22.04■■□□□ 1.12
CXCL12-208ENST00000496375 PPARGC1BQ86YN6 1023 aaKnown RBP22.04■■□□□ 1.12
CXCL12-208ENST00000496375 MYO5BQ9ULV0 1848 aa22.03■■□□□ 1.12
CXCL12-208ENST00000496375 ITGAEP38570 1179 aa22.03■■□□□ 1.12
CXCL12-208ENST00000496375 SENP3Q9H4L4 574 aaPredicted RBP22.03■■□□□ 1.12
CXCL12-208ENST00000496375 KCNA6P17658 529 aa22.01■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms