RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	ABCC2	Q92887	1545 aa		7.52	□□□□□ -1.2
VPS52-222	ENST00000495981	PAK3	O75914	559 aa	Predicted RBP	7.52	□□□□□ -1.21
VPS52-222	ENST00000495981	CRISPLD2	Q9H0B8	497 aa		7.52	□□□□□ -1.21
VPS52-222	ENST00000495981	CABP2	Q9NPB3	220 aa		7.52	□□□□□ -1.21
VPS52-222	ENST00000495981	SUPT5H	O00267	1087 aa	Known RBP	7.51	□□□□□ -1.21
VPS52-222	ENST00000495981	EVX2	Q03828	476 aa		7.51	□□□□□ -1.21
VPS52-222	ENST00000495981	BARGIN	Q6ZT62	677 aa		7.51	□□□□□ -1.21
VPS52-222	ENST00000495981	KIAA0586	Q9BVV6	1533 aa		7.51	□□□□□ -1.21
VPS52-222	ENST00000495981	CAMK2B	Q13554	666 aa		7.5	□□□□□ -1.21
VPS52-222	ENST00000495981	KIF12	Q96FN5	646 aa		7.5	□□□□□ -1.21
VPS52-222	ENST00000495981	LARP6	Q9BRS8	491 aa	Known RBP	7.5	□□□□□ -1.21
VPS52-222	ENST00000495981	IQGAP2	Q13576	1575 aa		7.5	□□□□□ -1.21
VPS52-222	ENST00000495981	MAP3K13	O43283	966 aa		7.49	□□□□□ -1.21
VPS52-222	ENST00000495981	ZRANB1	Q9UGI0	708 aa		7.49	□□□□□ -1.21
VPS52-222	ENST00000495981	PCF11	O94913	1555 aa	Known RBP	7.49	□□□□□ -1.21
VPS52-222	ENST00000495981	SPATA31D1	Q6ZQQ2	1576 aa		7.48	□□□□□ -1.21
VPS52-222	ENST00000495981	KIF27	Q86VH2	1401 aa		7.47	□□□□□ -1.21
VPS52-222	ENST00000495981	TNIK	Q9UKE5	1360 aa		7.46	□□□□□ -1.21
VPS52-222	ENST00000495981	KIAA0556	O60303	1618 aa		7.46	□□□□□ -1.21
VPS52-222	ENST00000495981	PDE4A	P27815	886 aa		7.46	□□□□□ -1.22
VPS52-222	ENST00000495981	DISP1	Q96F81	1524 aa		7.46	□□□□□ -1.22
VPS52-222	ENST00000495981	IGF1R	P08069	1367 aa		7.46	□□□□□ -1.22
VPS52-222	ENST00000495981	MAP3K4	Q9Y6R4	1608 aa		7.45	□□□□□ -1.22
VPS52-222	ENST00000495981	CTTNBP2	Q8WZ74	1663 aa		7.45	□□□□□ -1.22
VPS52-222	ENST00000495981	TEX14	Q8IWB6	1497 aa		7.45	□□□□□ -1.22
VPS52-222	ENST00000495981	MLLT3	P42568	568 aa	Predicted RBP	7.45	□□□□□ -1.22
VPS52-222	ENST00000495981	RBM26	Q5T8P6	1007 aa	Known RBP	7.45	□□□□□ -1.22
VPS52-222	ENST00000495981	SP7	Q8TDD2	431 aa	Predicted RBP	7.45	□□□□□ -1.22
VPS52-222	ENST00000495981	GPBP1L1	Q9HC44	474 aa	Predicted RBP	7.45	□□□□□ -1.22
VPS52-222	ENST00000495981	KIF21B	O75037	1637 aa		7.45	□□□□□ -1.22
VPS52-222	ENST00000495981	UACA	Q9BZF9	1416 aa		7.44	□□□□□ -1.22
VPS52-222	ENST00000495981	UHRF1BP1L	A0JNW5	1464 aa		7.44	□□□□□ -1.22
VPS52-222	ENST00000495981	UGGT2	Q9NYU1	1516 aa		7.44	□□□□□ -1.22
VPS52-222	ENST00000495981	RAPGEF3	O95398	923 aa		7.44	□□□□□ -1.22
VPS52-222	ENST00000495981	SMYD5	Q6GMV2	418 aa		7.44	□□□□□ -1.22
VPS52-222	ENST00000495981	DDX27	Q96GQ7	796 aa	Known RBP	7.44	□□□□□ -1.22
VPS52-222	ENST00000495981	KCNH8	Q96L42	1107 aa		7.44	□□□□□ -1.22
VPS52-222	ENST00000495981	ZCCHC11	Q5TAX3	1644 aa	Known RBP	7.44	□□□□□ -1.22
VPS52-222	ENST00000495981	ADAMTSL3	P82987	1691 aa		7.44	□□□□□ -1.22
VPS52-222	ENST00000495981	KDM5B	Q9UGL1	1544 aa		7.43	□□□□□ -1.22
VPS52-222	ENST00000495981	CD109	Q6YHK3	1445 aa		7.43	□□□□□ -1.22
VPS52-222	ENST00000495981	AK7	Q96M32	723 aa		7.42	□□□□□ -1.22
VPS52-222	ENST00000495981	MAGI3	Q5TCQ9	1506 aa		7.41	□□□□□ -1.22
VPS52-222	ENST00000495981	PHF12	Q96QT6	1004 aa		7.4	□□□□□ -1.22
VPS52-222	ENST00000495981	ARID4B	Q4LE39	1312 aa	Predicted RBP	7.4	□□□□□ -1.22
VPS52-222	ENST00000495981	CLCN6	P51797	869 aa		7.39	□□□□□ -1.23
VPS52-222	ENST00000495981	KDM4C	Q9H3R0	1056 aa		7.39	□□□□□ -1.23
VPS52-222	ENST00000495981	MADD	Q8WXG6	1647 aa		7.38	□□□□□ -1.23
VPS52-222	ENST00000495981	ABCA8	O94911	1581 aa		7.38	□□□□□ -1.23
VPS52-222	ENST00000495981	WDR7	Q9Y4E6	1490 aa		7.38	□□□□□ -1.23
VPS52-222	ENST00000495981	SRCAP	Q6ZRS2	3230 aa		7.38	□□□□□ -1.23
VPS52-222	ENST00000495981	CARMIL1	Q5VZK9	1371 aa		7.38	□□□□□ -1.23
VPS52-222	ENST00000495981	TRIM66	O15016	1216 aa		7.38	□□□□□ -1.23
VPS52-222	ENST00000495981	GPR37	O15354	613 aa		7.38	□□□□□ -1.23
VPS52-222	ENST00000495981	GABBR2	O75899	941 aa		7.38	□□□□□ -1.23
VPS52-222	ENST00000495981	GPIHBP1	Q8IV16	184 aa		7.38	□□□□□ -1.23
VPS52-222	ENST00000495981	IL27	Q8NEV9	243 aa		7.38	□□□□□ -1.23
VPS52-222	ENST00000495981	RAPGEF2	Q9Y4G8	1499 aa		7.37	□□□□□ -1.23
VPS52-222	ENST00000495981	ARAP3	Q8WWN8	1544 aa		7.37	□□□□□ -1.23
VPS52-222	ENST00000495981	CARMIL2	Q6F5E8	1435 aa		7.36	□□□□□ -1.23
VPS52-222	ENST00000495981	CFAP43	Q8NDM7	1665 aa		7.36	□□□□□ -1.23
VPS52-222	ENST00000495981	CEBPA	P49715	358 aa	Predicted RBP	7.36	□□□□□ -1.23
VPS52-222	ENST00000495981	EMILIN3	Q9NT22	766 aa		7.36	□□□□□ -1.23
VPS52-222	ENST00000495981	TRPC6	Q9Y210	931 aa		7.36	□□□□□ -1.23
VPS52-222	ENST00000495981	UBTF	P17480	764 aa	Known RBP	7.35	□□□□□ -1.23
VPS52-222	ENST00000495981	PDE4D	Q08499	809 aa		7.35	□□□□□ -1.23
VPS52-222	ENST00000495981	PPP1R15B	Q5SWA1	713 aa		7.35	□□□□□ -1.23
VPS52-222	ENST00000495981	SAMD9	Q5K651	1589 aa		7.34	□□□□□ -1.23
VPS52-222	ENST00000495981	ARID3C	A6NKF2	412 aa		7.34	□□□□□ -1.23
VPS52-222	ENST00000495981	ZMYND15	Q9H091	742 aa		7.34	□□□□□ -1.23
VPS52-222	ENST00000495981	GPHN	Q9NQX3	736 aa	Predicted RBP	7.34	□□□□□ -1.23
VPS52-222	ENST00000495981	YEATS2	Q9ULM3	1422 aa		7.34	□□□□□ -1.23
VPS52-222	ENST00000495981	PRX	Q9BXM0	1461 aa		7.33	□□□□□ -1.24
VPS52-222	ENST00000495981	MLEC	Q14165	292 aa		7.33	□□□□□ -1.24
VPS52-222	ENST00000495981	PDIA6	Q15084	440 aa		7.33	□□□□□ -1.24
VPS52-222	ENST00000495981	BCORL1	Q5H9F3	1711 aa		7.32	□□□□□ -1.24
VPS52-222	ENST00000495981	LTBP4	Q8N2S1	1624 aa		7.32	□□□□□ -1.24
VPS52-222	ENST00000495981	DPYSL4	O14531	572 aa		7.32	□□□□□ -1.24
VPS52-222	ENST00000495981	GALR2	O43603	387 aa	Predicted RBP	7.32	□□□□□ -1.24
VPS52-222	ENST00000495981	KRI1	Q8N9T8	703 aa	Known RBP	7.32	□□□□□ -1.24
VPS52-222	ENST00000495981	MS4A3	Q96HJ5	214 aa		7.32	□□□□□ -1.24
VPS52-222	ENST00000495981	TMEM106C	Q9BVX2	250 aa		7.32	□□□□□ -1.24
VPS52-222	ENST00000495981	HSPA1L	P34931	641 aa		7.31	□□□□□ -1.24
VPS52-222	ENST00000495981	FRMPD1	Q5SYB0	1578 aa		7.31	□□□□□ -1.24
VPS52-222	ENST00000495981	ABCA9	Q8IUA7	1624 aa		7.3	□□□□□ -1.24
VPS52-222	ENST00000495981	PLEKHG3	A1L390	1219 aa		7.3	□□□□□ -1.24
VPS52-222	ENST00000495981	UBAP1L	F5GYI3	381 aa		7.3	□□□□□ -1.24
VPS52-222	ENST00000495981	MKRN3	Q13064	507 aa	Known RBP	7.3	□□□□□ -1.24
VPS52-222	ENST00000495981	FAM117A	Q9C073	453 aa		7.3	□□□□□ -1.24
VPS52-222	ENST00000495981	C1orf115	Q9H7X2	142 aa		7.3	□□□□□ -1.24
VPS52-222	ENST00000495981	GOLGA3	Q08378	1498 aa		7.3	□□□□□ -1.24
VPS52-222	ENST00000495981	RIMS1	Q86UR5	1692 aa	Known RBP	7.29	□□□□□ -1.24
VPS52-222	ENST00000495981	DSG2	Q14126	1118 aa		7.29	□□□□□ -1.24
VPS52-222	ENST00000495981	RSPH6A	Q9H0K4	717 aa		7.29	□□□□□ -1.24
VPS52-222	ENST00000495981	SPDYE16	A6NNV3	312 aa	Predicted RBP	7.28	□□□□□ -1.24
VPS52-222	ENST00000495981	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	7.27	□□□□□ -1.24
VPS52-222	ENST00000495981	RAPGEF6	Q8TEU7	1601 aa		7.27	□□□□□ -1.25
VPS52-222	ENST00000495981	RGS17	Q9UGC6	210 aa	Predicted RBP	7.27	□□□□□ -1.25
VPS52-222	ENST00000495981	STRC	Q7RTU9	1775 aa		7.27	□□□□□ -1.25
VPS52-222	ENST00000495981	SIGLEC1	Q9BZZ2	1709 aa		7.27	□□□□□ -1.25

Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms