RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 KIAA0556O60303 1618 aa12.77□□□□□ -0.37
SYNE1-230ENST00000495090 CEP170Q5SW79 1584 aa12.77□□□□□ -0.37
SYNE1-230ENST00000495090 PDS5BQ9NTI5 1447 aa12.77□□□□□ -0.37
SYNE1-230ENST00000495090 ANKRD30AQ9BXX3 1397 aa12.76□□□□□ -0.37
SYNE1-230ENST00000495090 ZNF644Q9H582 1327 aaPredicted RBP12.76□□□□□ -0.37
SYNE1-230ENST00000495090 TROQ12816 1431 aaPredicted RBP12.76□□□□□ -0.37
SYNE1-230ENST00000495090 PKD2Q13563 968 aa12.76□□□□□ -0.37
SYNE1-230ENST00000495090 SHANK2Q9UPX8 1470 aa12.76□□□□□ -0.37
SYNE1-230ENST00000495090 KIAA0586Q9BVV6 1533 aa12.75□□□□□ -0.37
SYNE1-230ENST00000495090 NFKBIBQ15653 356 aa12.74□□□□□ -0.37
SYNE1-230ENST00000495090 ANKRD50Q9ULJ7 1429 aa12.74□□□□□ -0.37
SYNE1-230ENST00000495090 RTN4Q9NQC3 1192 aaKnown RBP12.74□□□□□ -0.37
SYNE1-230ENST00000495090 KDM2BQ8NHM5 1336 aa12.73□□□□□ -0.37
SYNE1-230ENST00000495090 DISP1Q96F81 1524 aa12.73□□□□□ -0.37
SYNE1-230ENST00000495090 GPATCH8Q9UKJ3 1502 aaKnown RBP12.73□□□□□ -0.37
SYNE1-230ENST00000495090 ZNF326Q5BKZ1 582 aaKnown RBP12.73□□□□□ -0.37
SYNE1-230ENST00000495090 LAMC1P11047 1609 aa12.73□□□□□ -0.37
SYNE1-230ENST00000495090 ST20-MTHFSA0A0A6YYL1 179 aa12.72□□□□□ -0.37
SYNE1-230ENST00000495090 PTPRGP23470 1445 aa12.72□□□□□ -0.37
SYNE1-230ENST00000495090 CNGB1Q14028 1251 aaPredicted RBP12.72□□□□□ -0.37
SYNE1-230ENST00000495090 CENPQQ7L2Z9 268 aaPredicted RBP12.71□□□□□ -0.37
SYNE1-230ENST00000495090 UBE2Q2Q8WVN8 375 aa12.71□□□□□ -0.37
SYNE1-230ENST00000495090 ZNF608Q9ULD9 1512 aaPredicted RBP12.71□□□□□ -0.37
SYNE1-230ENST00000495090 TRPM1Q7Z4N2 1603 aa12.71□□□□□ -0.38
SYNE1-230ENST00000495090 CRBNQ96SW2 442 aa12.7□□□□□ -0.38
SYNE1-230ENST00000495090 CFDP1Q9UEE9 299 aaPredicted RBP12.7□□□□□ -0.38
SYNE1-230ENST00000495090 PER1O15534 1290 aaPredicted RBP12.7□□□□□ -0.38
SYNE1-230ENST00000495090 GPRASP1Q5JY77 1395 aa12.69□□□□□ -0.38
SYNE1-230ENST00000495090 COL17A1Q9UMD9 1497 aaPredicted RBP12.69□□□□□ -0.38
SYNE1-230ENST00000495090 BRPF3Q9ULD4 1205 aa12.69□□□□□ -0.38
SYNE1-230ENST00000495090 FAM161AQ3B820 660 aa12.68□□□□□ -0.38
SYNE1-230ENST00000495090 FRAT1Q92837 279 aaPredicted RBP12.68□□□□□ -0.38
SYNE1-230ENST00000495090 CDCA7LQ96GN5 454 aa12.68□□□□□ -0.38
SYNE1-230ENST00000495090 EIF4G3O43432 1585 aaKnown RBP12.68□□□□□ -0.38
SYNE1-230ENST00000495090 SENP3-EIF4A1A0A087X0R7 540 aa12.67□□□□□ -0.38
SYNE1-230ENST00000495090 NUP155O75694 1391 aa12.67□□□□□ -0.38
SYNE1-230ENST00000495090 PRAG1Q86YV5 1406 aa12.67□□□□□ -0.38
SYNE1-230ENST00000495090 PRG4Q92954 1404 aaPredicted RBP12.66□□□□□ -0.38
SYNE1-230ENST00000495090 CDC42BPAQ5VT25 1732 aa12.66□□□□□ -0.38
SYNE1-230ENST00000495090 FAM43AQ8N2R8 423 aa12.66□□□□□ -0.38
SYNE1-230ENST00000495090 PRDM15P57071 1507 aaPredicted RBP12.65□□□□□ -0.38
SYNE1-230ENST00000495090 CLASP1Q7Z460 1538 aa12.65□□□□□ -0.38
SYNE1-230ENST00000495090 C8orf34Q49A92 452 aa12.65□□□□□ -0.38
SYNE1-230ENST00000495090 C9orf84Q5VXU9 1444 aa12.65□□□□□ -0.38
SYNE1-230ENST00000495090 PLIN1O60240 522 aa12.64□□□□□ -0.39
SYNE1-230ENST00000495090 ARID3CA6NKF2 412 aa12.64□□□□□ -0.39
SYNE1-230ENST00000495090 RSPH6AQ9H0K4 717 aa12.64□□□□□ -0.39
SYNE1-230ENST00000495090 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.64□□□□□ -0.39
SYNE1-230ENST00000495090 EIF2AK4Q9P2K8 1649 aaKnown RBP12.63□□□□□ -0.39
SYNE1-230ENST00000495090 EIF3AQ14152 1382 aaKnown RBP12.63□□□□□ -0.39
SYNE1-230ENST00000495090 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.62□□□□□ -0.39
SYNE1-230ENST00000495090 DCAF11Q8TEB1 546 aa12.62□□□□□ -0.39
SYNE1-230ENST00000495090 ARHGEF5Q12774 1597 aa12.62□□□□□ -0.39
SYNE1-230ENST00000495090 VIRMAQ69YN4 1812 aaKnown RBP12.62□□□□□ -0.39
SYNE1-230ENST00000495090 ABCC10Q5T3U5 1492 aa12.61□□□□□ -0.39
SYNE1-230ENST00000495090 NUP160Q12769 1436 aa12.61□□□□□ -0.39
SYNE1-230ENST00000495090 ZNF521Q96K83 1311 aa12.6□□□□□ -0.39
SYNE1-230ENST00000495090 FAM135AQ9P2D6 1515 aa12.59□□□□□ -0.39
SYNE1-230ENST00000495090 C20orf194Q5TEA3 1177 aa12.59□□□□□ -0.39
SYNE1-230ENST00000495090 DUSP27Q5VZP5 1158 aa12.59□□□□□ -0.39
SYNE1-230ENST00000495090 KDM2AQ9Y2K7 1162 aa12.59□□□□□ -0.39
SYNE1-230ENST00000495090 ERBINQ96RT1 1412 aa12.59□□□□□ -0.39
SYNE1-230ENST00000495090 TESK2Q96S53 571 aa12.58□□□□□ -0.39
SYNE1-230ENST00000495090 SLC4A3P48751 1232 aa12.58□□□□□ -0.4
SYNE1-230ENST00000495090 SKAP1Q86WV1 359 aa12.58□□□□□ -0.4
SYNE1-230ENST00000495090 CCDC144AA2RUR9 1427 aa12.58□□□□□ -0.4
SYNE1-230ENST00000495090 SYNJ2O15056 1496 aa12.57□□□□□ -0.4
SYNE1-230ENST00000495090 GRIN2AQ12879 1464 aa12.57□□□□□ -0.4
SYNE1-230ENST00000495090 DISP3Q9P2K9 1392 aa12.57□□□□□ -0.4
SYNE1-230ENST00000495090 FRAT2O75474 233 aaPredicted RBP12.57□□□□□ -0.4
SYNE1-230ENST00000495090 CCDC141Q6ZP82 1450 aa12.57□□□□□ -0.4
SYNE1-230ENST00000495090 A2MP01023 1474 aa12.56□□□□□ -0.4
SYNE1-230ENST00000495090 IFT140Q96RY7 1462 aa12.56□□□□□ -0.4
SYNE1-230ENST00000495090 ZNF777Q9ULD5 760 aaPredicted RBP12.56□□□□□ -0.4
SYNE1-230ENST00000495090 RNF17Q9BXT8 1623 aaKnown RBP12.56□□□□□ -0.4
SYNE1-230ENST00000495090 PLEKHH1Q9ULM0 1364 aa12.55□□□□□ -0.4
SYNE1-230ENST00000495090 UNC13BO14795 1591 aa12.55□□□□□ -0.4
SYNE1-230ENST00000495090 TMF1P82094 1093 aa12.55□□□□□ -0.4
SYNE1-230ENST00000495090 PANK3Q9H999 370 aa12.55□□□□□ -0.4
SYNE1-230ENST00000495090 PLB1Q6P1J6 1458 aa12.55□□□□□ -0.4
SYNE1-230ENST00000495090 TSPY4P0CV99 314 aa12.54□□□□□ -0.4
SYNE1-230ENST00000495090 TSPY10P0CW01 314 aa12.54□□□□□ -0.4
SYNE1-230ENST00000495090 GOLGA2Q08379 1002 aa12.54□□□□□ -0.4
SYNE1-230ENST00000495090 CC2D1BQ5T0F9 858 aaKnown RBP12.54□□□□□ -0.4
SYNE1-230ENST00000495090 MRC2Q9UBG0 1479 aa12.54□□□□□ -0.4
SYNE1-230ENST00000495090 ZMYM3Q14202 1370 aa12.54□□□□□ -0.4
SYNE1-230ENST00000495090 PIK3C2GO75747 1445 aa12.54□□□□□ -0.4
SYNE1-230ENST00000495090 TRMT2AQ8IZ69 625 aaKnown RBP12.54□□□□□ -0.4
SYNE1-230ENST00000495090 ADAMTS8Q9UP79 889 aa12.54□□□□□ -0.4
SYNE1-230ENST00000495090 NINLQ9Y2I6 1382 aa12.54□□□□□ -0.4
SYNE1-230ENST00000495090 ATP10AO60312 1499 aa12.53□□□□□ -0.4
SYNE1-230ENST00000495090 MAGI1Q96QZ7 1491 aaPredicted RBP12.53□□□□□ -0.4
SYNE1-230ENST00000495090 ABCC2Q92887 1545 aa12.53□□□□□ -0.4
SYNE1-230ENST00000495090 L1TD1Q5T7N2 865 aaKnown RBP12.53□□□□□ -0.4
SYNE1-230ENST00000495090 ABCA8O94911 1581 aa12.53□□□□□ -0.4
SYNE1-230ENST00000495090 SLFN5Q08AF3 891 aa12.52□□□□□ -0.41
SYNE1-230ENST00000495090 MYO5CQ9NQX4 1742 aa12.52□□□□□ -0.41
SYNE1-230ENST00000495090 MAPK8IP3Q9UPT6 1336 aa12.52□□□□□ -0.41
SYNE1-230ENST00000495090 NPC1L1Q9UHC9 1359 aa12.52□□□□□ -0.41
SYNE1-230ENST00000495090 NKTRP30414 1462 aaKnown RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms