RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 TCOF1Q13428 1488 aaKnown RBP35.04■■■■□ 3.2
HDDC3-203ENST00000494993 A2ML1A8K2U0 1454 aa35.03■■■■□ 3.2
HDDC3-203ENST00000494993 IQSEC2Q5JU85 1478 aa35.03■■■■□ 3.2
HDDC3-203ENST00000494993 DNMT1P26358 1616 aaKnown RBP35.03■■■■□ 3.2
HDDC3-203ENST00000494993 TSPY4P0CV99 314 aa35.02■■■■□ 3.2
HDDC3-203ENST00000494993 TSPY10P0CW01 314 aa35.02■■■■□ 3.2
HDDC3-203ENST00000494993 MAST1Q9Y2H9 1570 aa35.02■■■■□ 3.2
HDDC3-203ENST00000494993 PKD2Q13563 968 aa35.01■■■■□ 3.2
HDDC3-203ENST00000494993 PZPP20742 1482 aa35■■■■□ 3.19
HDDC3-203ENST00000494993 KANK4Q5T7N3 995 aaPredicted RBP34.97■■■■□ 3.19
HDDC3-203ENST00000494993 RNF17Q9BXT8 1623 aaKnown RBP34.95■■■■□ 3.19
HDDC3-203ENST00000494993 POLR1AO95602 1720 aaPredicted RBP34.95■■■■□ 3.19
HDDC3-203ENST00000494993 WASHC2CQ9Y4E1 1318 aa34.95■■■■□ 3.19
HDDC3-203ENST00000494993 TNRQ92752 1358 aa34.95■■■■□ 3.19
HDDC3-203ENST00000494993 MYOM3Q5VTT5 1437 aa34.95■■■■□ 3.19
HDDC3-203ENST00000494993 MIA2Q96PC5 1412 aa34.94■■■■□ 3.18
HDDC3-203ENST00000494993 FBXO31Q5XUX0 539 aaPredicted RBP34.93■■■■□ 3.18
HDDC3-203ENST00000494993 EIF2AK4Q9P2K8 1649 aaKnown RBP34.92■■■■□ 3.18
HDDC3-203ENST00000494993 ZNF335Q9H4Z2 1342 aaPredicted RBP34.91■■■■□ 3.18
HDDC3-203ENST00000494993 ZC3H13Q5T200 1668 aaKnown RBP34.9■■■■□ 3.18
HDDC3-203ENST00000494993 NEURL4Q96JN8 1562 aa34.84■■■■□ 3.17
HDDC3-203ENST00000494993 ABCC3O15438 1527 aa34.83■■■■□ 3.17
HDDC3-203ENST00000494993 NLRP1Q9C000 1473 aa34.82■■■■□ 3.16
HDDC3-203ENST00000494993 CROCC2H7BZ55 1655 aa34.82■■■■□ 3.16
HDDC3-203ENST00000494993 MROH1Q8NDA8 1641 aa34.81■■■■□ 3.16
HDDC3-203ENST00000494993 CEP152O94986 1710 aa34.8■■■■□ 3.16
HDDC3-203ENST00000494993 DUOX2Q9NRD8 1548 aa34.78■■■■□ 3.16
HDDC3-203ENST00000494993 UGGT1Q9NYU2 1555 aa34.78■■■■□ 3.16
HDDC3-203ENST00000494993 PTPN23Q9H3S7 1636 aa34.77■■■■□ 3.16
HDDC3-203ENST00000494993 CFAP65Q6ZU64 1925 aaKnown RBP34.77■■■■□ 3.16
HDDC3-203ENST00000494993 SPATA31D1Q6ZQQ2 1576 aa34.76■■■■□ 3.16
HDDC3-203ENST00000494993 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP34.74■■■■□ 3.15
HDDC3-203ENST00000494993 SHANK2Q9UPX8 1470 aa34.72■■■■□ 3.15
HDDC3-203ENST00000494993 APLP2Q06481 763 aa34.72■■■■□ 3.15
HDDC3-203ENST00000494993 THEMISQ8N1K5 641 aaPredicted RBP34.72■■■■□ 3.15
HDDC3-203ENST00000494993 DEPDC5O75140 1603 aa34.71■■■■□ 3.15
HDDC3-203ENST00000494993 ERVK-7P63135 1459 aa34.7■■■■□ 3.15
HDDC3-203ENST00000494993 ANKLE2Q86XL3 938 aa34.69■■■■□ 3.14
HDDC3-203ENST00000494993 ABCC5O15440 1437 aa34.69■■■■□ 3.14
HDDC3-203ENST00000494993 DISP3Q9P2K9 1392 aa34.68■■■■□ 3.14
HDDC3-203ENST00000494993 UBAP1LF5GYI3 381 aa34.67■■■■□ 3.14
HDDC3-203ENST00000494993 KIF15Q9NS87 1388 aa34.66■■■■□ 3.14
HDDC3-203ENST00000494993 CPS1P31327 1500 aa34.65■■■■□ 3.14
HDDC3-203ENST00000494993 PRDM15P57071 1507 aaPredicted RBP34.65■■■■□ 3.14
HDDC3-203ENST00000494993 MED14O60244 1454 aa34.65■■■■□ 3.14
HDDC3-203ENST00000494993 ERBINQ96RT1 1412 aa34.64■■■■□ 3.14
HDDC3-203ENST00000494993 IQGAP1P46940 1657 aa34.63■■■■□ 3.13
HDDC3-203ENST00000494993 DAPK1P53355 1430 aa34.63■■■■□ 3.13
HDDC3-203ENST00000494993 FGD6Q6ZV73 1430 aa34.63■■■■□ 3.13
HDDC3-203ENST00000494993 NPHP4O75161 1426 aaPredicted RBP34.62■■■■□ 3.13
HDDC3-203ENST00000494993 VWDEQ8N2E2 1590 aa34.62■■■■□ 3.13
HDDC3-203ENST00000494993 UBR1Q8IWV7 1749 aa34.61■■■■□ 3.13
HDDC3-203ENST00000494993 RRP7BPQ9NSQ0 103 aa34.58■■■■□ 3.13
HDDC3-203ENST00000494993 ARHGAP31Q2M1Z3 1444 aa34.55■■■■□ 3.12
HDDC3-203ENST00000494993 STRCP1A6NGW2 1772 aa34.49■■■■□ 3.11
HDDC3-203ENST00000494993 ILDR2Q71H61 639 aa34.48■■■■□ 3.11
HDDC3-203ENST00000494993 ANKRD30AQ9BXX3 1397 aa34.48■■■■□ 3.11
HDDC3-203ENST00000494993 GRWD1Q9BQ67 446 aaKnown RBP eCLIP34.45■■■■□ 3.11
HDDC3-203ENST00000494993 KANK1Q14678 1352 aa34.45■■■■□ 3.11
HDDC3-203ENST00000494993 CHIC2Q9UKJ5 165 aa34.44■■■■□ 3.1
HDDC3-203ENST00000494993 TOM1O60784 492 aa34.43■■■■□ 3.1
HDDC3-203ENST00000494993 SCAF11Q99590 1463 aaKnown RBP34.43■■■■□ 3.1
HDDC3-203ENST00000494993 SLIT1O75093 1534 aa34.43■■■■□ 3.1
HDDC3-203ENST00000494993 PIK3C2BO00750 1634 aa34.43■■■■□ 3.1
HDDC3-203ENST00000494993 LMTK2Q8IWU2 1503 aa34.42■■■■□ 3.1
HDDC3-203ENST00000494993 ARHGAP23Q9P227 1491 aa34.42■■■■□ 3.1
HDDC3-203ENST00000494993 SYNMO15061 1565 aa34.4■■■■□ 3.1
HDDC3-203ENST00000494993 SCAF1Q9H7N4 1312 aaKnown RBP34.39■■■■□ 3.1
HDDC3-203ENST00000494993 ADGRL2O95490 1459 aa34.39■■■■□ 3.1
HDDC3-203ENST00000494993 PIP4K2BP78356 416 aa34.38■■■■□ 3.09
HDDC3-203ENST00000494993 KDM5AP29375 1690 aaKnown RBP34.37■■■■□ 3.09
HDDC3-203ENST00000494993 ALKQ9UM73 1620 aa34.36■■■■□ 3.09
HDDC3-203ENST00000494993 LRRC7Q96NW7 1537 aa34.35■■■■□ 3.09
HDDC3-203ENST00000494993 LTKP29376 864 aa34.33■■■■□ 3.09
HDDC3-203ENST00000494993 EFCAB6Q5THR3 1501 aa34.33■■■■□ 3.09
HDDC3-203ENST00000494993 TXNDC2Q86VQ3 553 aa34.32■■■■□ 3.08
HDDC3-203ENST00000494993 HSPA1LP34931 641 aa34.31■■■■□ 3.08
HDDC3-203ENST00000494993 FAM50AQ14320 339 aaKnown RBP34.29■■■■□ 3.08
HDDC3-203ENST00000494993 SOCS7O14512 581 aa34.28■■■■□ 3.08
HDDC3-203ENST00000494993 TMEM2Q9UHN6 1383 aa34.27■■■■□ 3.08
HDDC3-203ENST00000494993 EID1Q9Y6B2 187 aa34.27■■■■□ 3.08
HDDC3-203ENST00000494993 STAG3Q9UJ98 1225 aa34.25■■■■□ 3.07
HDDC3-203ENST00000494993 XIRP1Q702N8 1843 aaKnown RBP34.25■■■■□ 3.07
HDDC3-203ENST00000494993 NOS1P29475 1434 aa34.24■■■■□ 3.07
HDDC3-203ENST00000494993 IDI1Q13907 227 aa34.23■■■■□ 3.07
HDDC3-203ENST00000494993 ANKRD50Q9ULJ7 1429 aa34.22■■■■□ 3.07
HDDC3-203ENST00000494993 ADGRB3O60242 1522 aa34.2■■■■□ 3.07
HDDC3-203ENST00000494993 MED1Q15648 1581 aaPredicted RBP34.2■■■■□ 3.07
HDDC3-203ENST00000494993 TET3O43151 1660 aa34.19■■■■□ 3.06
HDDC3-203ENST00000494993 RPRD2Q5VT52 1461 aaKnown RBP34.17■■■■□ 3.06
HDDC3-203ENST00000494993 GCC2Q8IWJ2 1684 aa34.15■■■■□ 3.06
HDDC3-203ENST00000494993 MYO5BQ9ULV0 1848 aa34.15■■■■□ 3.06
HDDC3-203ENST00000494993 UNC13BO14795 1591 aa34.14■■■■□ 3.06
HDDC3-203ENST00000494993 SLC52A1Q9NWF4 448 aa34.11■■■■□ 3.05
HDDC3-203ENST00000494993 E9PCH4 1651 aa34.03■■■■□ 3.04
HDDC3-203ENST00000494993 ROCK1Q13464 1354 aa34.03■■■■□ 3.04
HDDC3-203ENST00000494993 SLC26A8Q96RN1 970 aa34.02■■■■□ 3.04
HDDC3-203ENST00000494993 TMEM131LA2VDJ0 1609 aa34.01■■■■□ 3.04
HDDC3-203ENST00000494993 KCNA6P17658 529 aa34.01■■■■□ 3.03
HDDC3-203ENST00000494993 NWD1Q149M9 1564 aa34.01■■■■□ 3.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms