RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 GORABQ5T7V8 394 aa23.95■■□□□ 1.42
COL27A1-207ENST00000494090 CCDC34Q96HJ3 373 aa23.95■■□□□ 1.42
COL27A1-207ENST00000494090 CLSTN1O94985 981 aa23.94■■□□□ 1.42
COL27A1-207ENST00000494090 CLUAP1Q96AJ1 413 aa23.94■■□□□ 1.42
COL27A1-207ENST00000494090 PANK3Q9H999 370 aa23.94■■□□□ 1.42
COL27A1-207ENST00000494090 ZNF330Q9Y3S2 320 aaPredicted RBP23.93■■□□□ 1.42
COL27A1-207ENST00000494090 NGDNQ8NEJ9 315 aaKnown RBP23.92■■□□□ 1.42
COL27A1-207ENST00000494090 SYAP1Q96A49 352 aaPredicted RBP23.92■■□□□ 1.42
COL27A1-207ENST00000494090 GOLGA6L3A6NEY3 463 aa23.92■■□□□ 1.42
COL27A1-207ENST00000494090 CENPQQ7L2Z9 268 aaPredicted RBP23.92■■□□□ 1.42
COL27A1-207ENST00000494090 JPH4Q96JJ6 628 aa23.92■■□□□ 1.42
COL27A1-207ENST00000494090 TAF7LQ5H9L4 462 aa23.91■■□□□ 1.42
COL27A1-207ENST00000494090 USP47Q96K76 1375 aa23.9■■□□□ 1.42
COL27A1-207ENST00000494090 KIAA2012Q0VF49 1180 aa23.9■■□□□ 1.42
COL27A1-207ENST00000494090 RRP1P56182 461 aaKnown RBP23.88■■□□□ 1.41
COL27A1-207ENST00000494090 UACAQ9BZF9 1416 aa23.88■■□□□ 1.41
COL27A1-207ENST00000494090 AMPHP49418 695 aa23.87■■□□□ 1.41
COL27A1-207ENST00000494090 USP35Q9P2H5 1018 aa23.87■■□□□ 1.41
COL27A1-207ENST00000494090 PDE4AP27815 886 aa23.85■■□□□ 1.41
COL27A1-207ENST00000494090 TPM4P67936 248 aa23.85■■□□□ 1.41
COL27A1-207ENST00000494090 E9PSI1 815 aa23.85■■□□□ 1.41
COL27A1-207ENST00000494090 FAM161AQ3B820 660 aa23.84■■□□□ 1.41
COL27A1-207ENST00000494090 CCDC9Q9Y3X0 531 aaKnown RBP23.84■■□□□ 1.41
COL27A1-207ENST00000494090 CSPP1Q1MSJ5 1256 aa23.84■■□□□ 1.41
COL27A1-207ENST00000494090 FANCD2Q9BXW9 1451 aa23.83■■□□□ 1.41
COL27A1-207ENST00000494090 TRAK1Q9UPV9 953 aa23.83■■□□□ 1.41
COL27A1-207ENST00000494090 CHMP3Q9Y3E7 222 aa23.83■■□□□ 1.41
COL27A1-207ENST00000494090 EXOC6Q8TAG9 804 aa23.82■■□□□ 1.4
COL27A1-207ENST00000494090 TRIM6-TRIM34B2RNG4 842 aa23.81■■□□□ 1.4
COL27A1-207ENST00000494090 NUTM2DQ5VT03 806 aaPredicted RBP23.79■■□□□ 1.4
COL27A1-207ENST00000494090 RRP7AQ9Y3A4 280 aaKnown RBP23.79■■□□□ 1.4
COL27A1-207ENST00000494090 KIF3AQ9Y496 699 aa23.79■■□□□ 1.4
COL27A1-207ENST00000494090 SLC4A10Q6U841 1118 aa23.78■■□□□ 1.4
COL27A1-207ENST00000494090 CGNL1Q0VF96 1302 aa23.78■■□□□ 1.4
COL27A1-207ENST00000494090 PLIN1O60240 522 aa23.77■■□□□ 1.4
COL27A1-207ENST00000494090 CRBNQ96SW2 442 aa23.77■■□□□ 1.4
COL27A1-207ENST00000494090 ST18O60284 1047 aa23.77■■□□□ 1.4
COL27A1-207ENST00000494090 IGF1RP08069 1367 aa23.76■■□□□ 1.39
COL27A1-207ENST00000494090 FANCIQ9NVI1 1328 aa23.76■■□□□ 1.39
COL27A1-207ENST00000494090 VGFO15240 615 aaPredicted RBP23.76■■□□□ 1.39
COL27A1-207ENST00000494090 ZKSCAN2Q63HK3 967 aa23.75■■□□□ 1.39
COL27A1-207ENST00000494090 CHMP4CQ96CF2 233 aa23.75■■□□□ 1.39
COL27A1-207ENST00000494090 HSP90B1P14625 803 aaKnown RBP23.75■■□□□ 1.39
COL27A1-207ENST00000494090 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.75■■□□□ 1.39
COL27A1-207ENST00000494090 NGEFQ8N5V2 710 aa23.75■■□□□ 1.39
COL27A1-207ENST00000494090 DDX11L8A8MPP1 907 aa23.74■■□□□ 1.39
COL27A1-207ENST00000494090 MYOM3Q5VTT5 1437 aa23.74■■□□□ 1.39
COL27A1-207ENST00000494090 FGD6Q6ZV73 1430 aa23.74■■□□□ 1.39
COL27A1-207ENST00000494090 G3V3G9 751 aa23.74■■□□□ 1.39
COL27A1-207ENST00000494090 DCAF8Q5TAQ9 597 aa23.74■■□□□ 1.39
COL27A1-207ENST00000494090 EVC2Q86UK5 1308 aa23.72■■□□□ 1.39
COL27A1-207ENST00000494090 CUX1P39880 1505 aa23.72■■□□□ 1.39
COL27A1-207ENST00000494090 KIF21BO75037 1637 aa23.72■■□□□ 1.39
COL27A1-207ENST00000494090 FOXD4L1Q9NU39 408 aa23.71■■□□□ 1.39
COL27A1-207ENST00000494090 GTF2E1P29083 439 aaPredicted RBP23.7■■□□□ 1.39
COL27A1-207ENST00000494090 CCDC7Q96M83 1385 aa23.7■■□□□ 1.38
COL27A1-207ENST00000494090 PTPRGP23470 1445 aa23.7■■□□□ 1.38
COL27A1-207ENST00000494090 COG3Q96JB2 828 aa23.69■■□□□ 1.38
COL27A1-207ENST00000494090 FGD5Q6ZNL6 1462 aa23.68■■□□□ 1.38
COL27A1-207ENST00000494090 BCL2L13Q9BXK5 485 aa23.68■■□□□ 1.38
COL27A1-207ENST00000494090 PHF14O94880 888 aa23.68■■□□□ 1.38
COL27A1-207ENST00000494090 APAF1O14727 1248 aa23.68■■□□□ 1.38
COL27A1-207ENST00000494090 COG6Q9Y2V7 657 aa23.67■■□□□ 1.38
COL27A1-207ENST00000494090 LTV1Q96GA3 475 aaPredicted RBP23.67■■□□□ 1.38
COL27A1-207ENST00000494090 KIF16BQ96L93 1317 aa23.66■■□□□ 1.38
COL27A1-207ENST00000494090 ANKRD45Q5TZF3 282 aa23.66■■□□□ 1.38
COL27A1-207ENST00000494090 LRRC9Q6ZRR7 1453 aa23.65■■□□□ 1.38
COL27A1-207ENST00000494090 RASSF8Q8NHQ8 419 aa23.65■■□□□ 1.38
COL27A1-207ENST00000494090 CNTLNQ9NXG0 1405 aa23.65■■□□□ 1.38
COL27A1-207ENST00000494090 FRAT2O75474 233 aaPredicted RBP23.65■■□□□ 1.38
COL27A1-207ENST00000494090 C1orf141Q5JVX7 400 aa23.65■■□□□ 1.38
COL27A1-207ENST00000494090 KIF7Q2M1P5 1343 aa23.65■■□□□ 1.38
COL27A1-207ENST00000494090 NOL8Q76FK4 1167 aaKnown RBP23.64■■□□□ 1.38
COL27A1-207ENST00000494090 GAPVD1Q14C86 1478 aa23.64■■□□□ 1.37
COL27A1-207ENST00000494090 GSE1Q14687 1217 aa23.64■■□□□ 1.37
COL27A1-207ENST00000494090 SKOR2Q2VWA4 1001 aaPredicted RBP23.63■■□□□ 1.37
COL27A1-207ENST00000494090 SLC4A3P48751 1232 aa23.63■■□□□ 1.37
COL27A1-207ENST00000494090 LRRFIP1Q32MZ4 808 aaKnown RBP23.63■■□□□ 1.37
COL27A1-207ENST00000494090 NOC3LQ8WTT2 800 aaKnown RBP23.62■■□□□ 1.37
COL27A1-207ENST00000494090 DDX19BQ9UMR2 479 aa23.62■■□□□ 1.37
COL27A1-207ENST00000494090 STAC3Q96MF2 364 aa23.61■■□□□ 1.37
COL27A1-207ENST00000494090 ELL2O00472 640 aaPredicted RBP23.6■■□□□ 1.37
COL27A1-207ENST00000494090 TOMM22Q9NS69 142 aa23.6■■□□□ 1.37
COL27A1-207ENST00000494090 MIA2Q96PC5 1412 aa23.59■■□□□ 1.37
COL27A1-207ENST00000494090 TEFQ10587 303 aa23.58■■□□□ 1.37
COL27A1-207ENST00000494090 NCBP3Q53F19 620 aaKnown RBP23.57■■□□□ 1.36
COL27A1-207ENST00000494090 NUTM2FA1L443 756 aa23.56■■□□□ 1.36
COL27A1-207ENST00000494090 NEXNQ0ZGT2 675 aa23.56■■□□□ 1.36
COL27A1-207ENST00000494090 CASKIN1Q8WXD9 1431 aa23.56■■□□□ 1.36
COL27A1-207ENST00000494090 DZIP1LQ8IYY4 767 aaKnown RBP23.56■■□□□ 1.36
COL27A1-207ENST00000494090 DDX49Q9Y6V7 483 aaKnown RBP23.56■■□□□ 1.36
COL27A1-207ENST00000494090 SF3A1Q15459 793 aaKnown RBP23.56■■□□□ 1.36
COL27A1-207ENST00000494090 DIAPH1O60610 1272 aaKnown RBP23.55■■□□□ 1.36
COL27A1-207ENST00000494090 FYCO1Q9BQS8 1478 aa23.55■■□□□ 1.36
COL27A1-207ENST00000494090 RILPL2Q969X0 211 aa23.55■■□□□ 1.36
COL27A1-207ENST00000494090 ATP6V1DQ9Y5K8 247 aa23.55■■□□□ 1.36
COL27A1-207ENST00000494090 MARCH6O60337 910 aa23.55■■□□□ 1.36
COL27A1-207ENST00000494090 RUNDC1Q96C34 613 aa23.55■■□□□ 1.36
COL27A1-207ENST00000494090 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.55■■□□□ 1.36
COL27A1-207ENST00000494090 RAD54L2Q9Y4B4 1467 aa23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms