RNA–Protein interactions for RNA: ENST00000493732.5

NPHP3-209, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,933 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-209ENST00000493732 ERICH6BQ5W0A0 696 aa13.23□□□□□ -0.29
NPHP3-209ENST00000493732 MRS2Q9HD23 443 aa13.23□□□□□ -0.29
NPHP3-209ENST00000493732 ZCCHC11Q5TAX3 1644 aaKnown RBP13.23□□□□□ -0.29
NPHP3-209ENST00000493732 IQGAP3Q86VI3 1631 aa13.23□□□□□ -0.29
NPHP3-209ENST00000493732 KTN1Q86UP2 1357 aaKnown RBP13.22□□□□□ -0.29
NPHP3-209ENST00000493732 ATP10AO60312 1499 aa13.22□□□□□ -0.29
NPHP3-209ENST00000493732 ERCC6L2Q5T890 1561 aa13.22□□□□□ -0.29
NPHP3-209ENST00000493732 DCAF11Q8TEB1 546 aa13.21□□□□□ -0.29
NPHP3-209ENST00000493732 RTEL1-TNFRSF6BF6WH68 1400 aa13.2□□□□□ -0.3
NPHP3-209ENST00000493732 MAGI2Q86UL8 1455 aa13.2□□□□□ -0.3
NPHP3-209ENST00000493732 ZBED9Q6R2W3 1325 aa13.19□□□□□ -0.3
NPHP3-209ENST00000493732 ABCC1P33527 1531 aa13.19□□□□□ -0.3
NPHP3-209ENST00000493732 DHX29Q7Z478 1369 aaKnown RBP13.19□□□□□ -0.3
NPHP3-209ENST00000493732 BCORL1Q5H9F3 1711 aa13.18□□□□□ -0.3
NPHP3-209ENST00000493732 STAC3Q96MF2 364 aa13.18□□□□□ -0.3
NPHP3-209ENST00000493732 LAMC1P11047 1609 aa13.17□□□□□ -0.3
NPHP3-209ENST00000493732 EIF2AK4Q9P2K8 1649 aaKnown RBP13.17□□□□□ -0.3
NPHP3-209ENST00000493732 PRAG1Q86YV5 1406 aa13.17□□□□□ -0.3
NPHP3-209ENST00000493732 KDM2AQ9Y2K7 1162 aa13.17□□□□□ -0.3
NPHP3-209ENST00000493732 GPRASP1Q5JY77 1395 aa13.16□□□□□ -0.3
NPHP3-209ENST00000493732 FAM9BQ8IZU0 186 aa13.15□□□□□ -0.3
NPHP3-209ENST00000493732 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.15□□□□□ -0.3
NPHP3-209ENST00000493732 TRPM1Q7Z4N2 1603 aa13.14□□□□□ -0.31
NPHP3-209ENST00000493732 SPAG9O60271 1321 aaKnown RBP13.14□□□□□ -0.31
NPHP3-209ENST00000493732 ST20-MTHFSA0A0A6YYL1 179 aa13.14□□□□□ -0.31
NPHP3-209ENST00000493732 PLA2R1Q13018 1463 aa13.14□□□□□ -0.31
NPHP3-209ENST00000493732 RALBP1Q15311 655 aa13.13□□□□□ -0.31
NPHP3-209ENST00000493732 WDR7Q9Y4E6 1490 aa13.13□□□□□ -0.31
NPHP3-209ENST00000493732 CCDC184Q52MB2 194 aa13.13□□□□□ -0.31
NPHP3-209ENST00000493732 POLR3GLQ9BT43 218 aa13.13□□□□□ -0.31
NPHP3-209ENST00000493732 WASHC2CQ9Y4E1 1318 aa13.12□□□□□ -0.31
NPHP3-209ENST00000493732 BCANQ96GW7 911 aa13.11□□□□□ -0.31
NPHP3-209ENST00000493732 A2MP01023 1474 aa13.11□□□□□ -0.31
NPHP3-209ENST00000493732 TRAPPC8Q9Y2L5 1435 aa13.11□□□□□ -0.31
NPHP3-209ENST00000493732 TSHZ2Q9NRE2 1034 aa13.11□□□□□ -0.31
NPHP3-209ENST00000493732 KANK1Q14678 1352 aa13.1□□□□□ -0.31
NPHP3-209ENST00000493732 BRD4O60885 1362 aaPredicted RBP13.09□□□□□ -0.31
NPHP3-209ENST00000493732 RGL3Q3MIN7 710 aa13.09□□□□□ -0.31
NPHP3-209ENST00000493732 TMC1Q8TDI8 760 aa13.09□□□□□ -0.31
NPHP3-209ENST00000493732 ABCA9Q8IUA7 1624 aa13.09□□□□□ -0.31
NPHP3-209ENST00000493732 PRDM15P57071 1507 aaPredicted RBP13.09□□□□□ -0.31
NPHP3-209ENST00000493732 ZFYVE16Q7Z3T8 1539 aa13.09□□□□□ -0.31
NPHP3-209ENST00000493732 MYBBP1AQ9BQG0 1328 aaKnown RBP13.08□□□□□ -0.31
NPHP3-209ENST00000493732 E9PCH4 1651 aa13.08□□□□□ -0.32
NPHP3-209ENST00000493732 FANCAO15360 1455 aa13.08□□□□□ -0.32
NPHP3-209ENST00000493732 DEPDC5O75140 1603 aa13.06□□□□□ -0.32
NPHP3-209ENST00000493732 TRPM2O94759 1503 aa13.06□□□□□ -0.32
NPHP3-209ENST00000493732 PTPRTO14522 1441 aa13.06□□□□□ -0.32
NPHP3-209ENST00000493732 SMG6Q86US8 1419 aaKnown RBP13.06□□□□□ -0.32
NPHP3-209ENST00000493732 TMF1P82094 1093 aa13.05□□□□□ -0.32
NPHP3-209ENST00000493732 PNISRQ8TF01 805 aaKnown RBP13.05□□□□□ -0.32
NPHP3-209ENST00000493732 ATP7AQ04656 1500 aa13.05□□□□□ -0.32
NPHP3-209ENST00000493732 NEURL4Q96JN8 1562 aa13.05□□□□□ -0.32
NPHP3-209ENST00000493732 INO80Q9ULG1 1556 aaPredicted RBP13.05□□□□□ -0.32
NPHP3-209ENST00000493732 SLC24A1O60721 1099 aa13.05□□□□□ -0.32
NPHP3-209ENST00000493732 PPP4R2Q9NY27 417 aa13.05□□□□□ -0.32
NPHP3-209ENST00000493732 COL17A1Q9UMD9 1497 aaPredicted RBP13.05□□□□□ -0.32
NPHP3-209ENST00000493732 TET3O43151 1660 aa13.04□□□□□ -0.32
NPHP3-209ENST00000493732 AFAP1Q8N556 730 aa13.03□□□□□ -0.32
NPHP3-209ENST00000493732 ADGRL1O94910 1474 aa13.03□□□□□ -0.32
NPHP3-209ENST00000493732 NBPF1Q3BBV0 1214 aa13.03□□□□□ -0.32
NPHP3-209ENST00000493732 CDCA8Q53HL2 280 aa13.03□□□□□ -0.32
NPHP3-209ENST00000493732 NLRP13Q86W25 1043 aa13.03□□□□□ -0.32
NPHP3-209ENST00000493732 RNF17Q9BXT8 1623 aaKnown RBP13.02□□□□□ -0.32
NPHP3-209ENST00000493732 NPM1P06748 294 aaKnown RBP eCLIP13.02□□□□□ -0.32
NPHP3-209ENST00000493732 PHF23Q9BUL5 403 aaPredicted RBP13.02□□□□□ -0.32
NPHP3-209ENST00000493732 INSRP06213 1382 aa13.02□□□□□ -0.33
NPHP3-209ENST00000493732 LRPPRCP42704 1394 aaKnown RBP13.02□□□□□ -0.33
NPHP3-209ENST00000493732 VWDEQ8N2E2 1590 aa13.02□□□□□ -0.33
NPHP3-209ENST00000493732 SPHKAPQ2M3C7 1700 aa13.02□□□□□ -0.33
NPHP3-209ENST00000493732 NUDCQ9Y266 331 aa13.01□□□□□ -0.33
NPHP3-209ENST00000493732 PARD3Q8TEW0 1356 aa13.01□□□□□ -0.33
NPHP3-209ENST00000493732 SCAPERQ9BY12 1400 aa13.01□□□□□ -0.33
NPHP3-209ENST00000493732 CEP152O94986 1710 aa13.01□□□□□ -0.33
NPHP3-209ENST00000493732 TESK2Q96S53 571 aa13.01□□□□□ -0.33
NPHP3-209ENST00000493732 ASXL2Q76L83 1435 aa13.01□□□□□ -0.33
NPHP3-209ENST00000493732 ZMYM4Q5VZL5 1548 aa13□□□□□ -0.33
NPHP3-209ENST00000493732 CFAP74Q9C0B2 1584 aa12.99□□□□□ -0.33
NPHP3-209ENST00000493732 PER1O15534 1290 aaPredicted RBP12.99□□□□□ -0.33
NPHP3-209ENST00000493732 MADDQ8WXG6 1647 aa12.99□□□□□ -0.33
NPHP3-209ENST00000493732 EIF3AQ14152 1382 aaKnown RBP12.98□□□□□ -0.33
NPHP3-209ENST00000493732 ZNF518AQ6AHZ1 1483 aa12.98□□□□□ -0.33
NPHP3-209ENST00000493732 PDE3BQ13370 1112 aa12.98□□□□□ -0.33
NPHP3-209ENST00000493732 MYT1LQ9UL68 1186 aa12.98□□□□□ -0.33
NPHP3-209ENST00000493732 KIAA1210Q9ULL0 1709 aa12.97□□□□□ -0.33
NPHP3-209ENST00000493732 KIF3BO15066 747 aa12.97□□□□□ -0.33
NPHP3-209ENST00000493732 OSCARQ8IYS5 282 aa12.97□□□□□ -0.33
NPHP3-209ENST00000493732 SCAF11Q99590 1463 aaKnown RBP12.97□□□□□ -0.33
NPHP3-209ENST00000493732 DISP3Q9P2K9 1392 aa12.96□□□□□ -0.33
NPHP3-209ENST00000493732 RNF123Q5XPI4 1314 aa12.96□□□□□ -0.34
NPHP3-209ENST00000493732 CLTCL1P53675 1640 aa12.96□□□□□ -0.34
NPHP3-209ENST00000493732 LMTK2Q8IWU2 1503 aa12.95□□□□□ -0.34
NPHP3-209ENST00000493732 IQGAP1P46940 1657 aa12.95□□□□□ -0.34
NPHP3-209ENST00000493732 CNGB1Q14028 1251 aaPredicted RBP12.95□□□□□ -0.34
NPHP3-209ENST00000493732 MYOM2P54296 1465 aa12.94□□□□□ -0.34
NPHP3-209ENST00000493732 PANK3Q9H999 370 aa12.94□□□□□ -0.34
NPHP3-209ENST00000493732 IRX6P78412 446 aaPredicted RBP12.93□□□□□ -0.34
NPHP3-209ENST00000493732 EFCAB6Q5THR3 1501 aa12.92□□□□□ -0.34
NPHP3-209ENST00000493732 RBM19Q9Y4C8 960 aaKnown RBP12.92□□□□□ -0.34
NPHP3-209ENST00000493732 MLH3Q9UHC1 1453 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms