RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 VWDEQ8N2E2 1590 aa18.77■□□□□ 0.6
VPS52-220ENST00000493674 CCER1Q8TC90 406 aaPredicted RBP18.76■□□□□ 0.59
VPS52-220ENST00000493674 SIGLEC1Q9BZZ2 1709 aa18.76■□□□□ 0.59
VPS52-220ENST00000493674 A2MP01023 1474 aa18.76■□□□□ 0.59
VPS52-220ENST00000493674 DHX29Q7Z478 1369 aaKnown RBP18.74■□□□□ 0.59
VPS52-220ENST00000493674 RAPGEF3O95398 923 aa18.74■□□□□ 0.59
VPS52-220ENST00000493674 CEP152O94986 1710 aa18.73■□□□□ 0.59
VPS52-220ENST00000493674 FAM135AQ9P2D6 1515 aa18.73■□□□□ 0.59
VPS52-220ENST00000493674 YEATS2Q9ULM3 1422 aa18.73■□□□□ 0.59
VPS52-220ENST00000493674 TET3O43151 1660 aa18.73■□□□□ 0.59
VPS52-220ENST00000493674 ZC3H13Q5T200 1668 aaKnown RBP18.7■□□□□ 0.58
VPS52-220ENST00000493674 E9PCH4 1651 aa18.69■□□□□ 0.58
VPS52-220ENST00000493674 AGLP35573 1532 aa18.69■□□□□ 0.58
VPS52-220ENST00000493674 ATP10AO60312 1499 aa18.67■□□□□ 0.58
VPS52-220ENST00000493674 LMTK2Q8IWU2 1503 aa18.65■□□□□ 0.58
VPS52-220ENST00000493674 SPHKAPQ2M3C7 1700 aa18.65■□□□□ 0.58
VPS52-220ENST00000493674 NUP155O75694 1391 aa18.65■□□□□ 0.58
VPS52-220ENST00000493674 ZEB1P37275 1124 aaPredicted RBP18.64■□□□□ 0.57
VPS52-220ENST00000493674 TRIM52Q96A61 297 aa18.64■□□□□ 0.57
VPS52-220ENST00000493674 MPHOSPH9Q99550 1183 aa18.64■□□□□ 0.57
VPS52-220ENST00000493674 CAMSAP1Q5T5Y3 1602 aa18.63■□□□□ 0.57
VPS52-220ENST00000493674 EFCAB6Q5THR3 1501 aa18.62■□□□□ 0.57
VPS52-220ENST00000493674 ANKRD30BQ9BXX2 1392 aa18.59■□□□□ 0.57
VPS52-220ENST00000493674 MYT1LQ9UL68 1186 aa18.59■□□□□ 0.57
VPS52-220ENST00000493674 ABCC3O15438 1527 aa18.59■□□□□ 0.57
VPS52-220ENST00000493674 SLC4A1APQ9BWU0 796 aaKnown RBP18.58■□□□□ 0.56
VPS52-220ENST00000493674 ADAMTSL3P82987 1691 aa18.57■□□□□ 0.56
VPS52-220ENST00000493674 CFAP65Q6ZU64 1925 aaKnown RBP18.57■□□□□ 0.56
VPS52-220ENST00000493674 KIF3BO15066 747 aa18.56■□□□□ 0.56
VPS52-220ENST00000493674 KANK1Q14678 1352 aa18.54■□□□□ 0.56
VPS52-220ENST00000493674 TRPM2O94759 1503 aa18.54■□□□□ 0.56
VPS52-220ENST00000493674 CLTCQ00610 1675 aaKnown RBP18.54■□□□□ 0.56
VPS52-220ENST00000493674 RPRD2Q5VT52 1461 aaKnown RBP18.53■□□□□ 0.56
VPS52-220ENST00000493674 FER1L4A9Z1Z3 1794 aa18.53■□□□□ 0.56
VPS52-220ENST00000493674 PKD2Q13563 968 aa18.52■□□□□ 0.56
VPS52-220ENST00000493674 MROH2AA6NES4 1674 aa18.52■□□□□ 0.56
VPS52-220ENST00000493674 PLA2R1Q13018 1463 aa18.52■□□□□ 0.55
VPS52-220ENST00000493674 PREX1Q8TCU6 1659 aa18.5■□□□□ 0.55
VPS52-220ENST00000493674 PTPRTO14522 1441 aa18.49■□□□□ 0.55
VPS52-220ENST00000493674 MADDQ8WXG6 1647 aa18.49■□□□□ 0.55
VPS52-220ENST00000493674 KIF1BO60333 1816 aa18.49■□□□□ 0.55
VPS52-220ENST00000493674 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.49■□□□□ 0.55
VPS52-220ENST00000493674 CLTCL1P53675 1640 aa18.49■□□□□ 0.55
VPS52-220ENST00000493674 FOXD1Q16676 465 aa18.48■□□□□ 0.55
VPS52-220ENST00000493674 SIN3AQ96ST3 1273 aa18.48■□□□□ 0.55
VPS52-220ENST00000493674 PIK3C2BO00750 1634 aa18.47■□□□□ 0.55
VPS52-220ENST00000493674 ARHGAP31Q2M1Z3 1444 aa18.47■□□□□ 0.55
VPS52-220ENST00000493674 NEURL4Q96JN8 1562 aa18.47■□□□□ 0.55
VPS52-220ENST00000493674 KDM4FA0A1W2PPD8 638 aa18.46■□□□□ 0.55
VPS52-220ENST00000493674 RIMS1Q86UR5 1692 aaKnown RBP18.46■□□□□ 0.55
VPS52-220ENST00000493674 TIMELESSQ9UNS1 1208 aa18.45■□□□□ 0.54
VPS52-220ENST00000493674 NPATQ14207 1427 aa18.44■□□□□ 0.54
VPS52-220ENST00000493674 IFT172Q9UG01 1749 aa18.43■□□□□ 0.54
VPS52-220ENST00000493674 SYNMO15061 1565 aa18.43■□□□□ 0.54
VPS52-220ENST00000493674 PPP6R1Q9UPN7 881 aa18.43■□□□□ 0.54
VPS52-220ENST00000493674 GGT6Q6P531 493 aa18.41■□□□□ 0.54
VPS52-220ENST00000493674 NOS1P29475 1434 aa18.4■□□□□ 0.54
VPS52-220ENST00000493674 MYO5BQ9ULV0 1848 aa18.4■□□□□ 0.54
VPS52-220ENST00000493674 ARID4BQ4LE39 1312 aaPredicted RBP18.4■□□□□ 0.54
VPS52-220ENST00000493674 AEBP2Q6ZN18 517 aaPredicted RBP18.39■□□□□ 0.53
VPS52-220ENST00000493674 CCDC144AA2RUR9 1427 aa18.39■□□□□ 0.53
VPS52-220ENST00000493674 CNTLNQ9NXG0 1405 aa18.39■□□□□ 0.53
VPS52-220ENST00000493674 SPATA31D1Q6ZQQ2 1576 aa18.38■□□□□ 0.53
VPS52-220ENST00000493674 C3P01024 1663 aa18.38■□□□□ 0.53
VPS52-220ENST00000493674 NEUROD1Q13562 356 aa18.37■□□□□ 0.53
VPS52-220ENST00000493674 WASHC2CQ9Y4E1 1318 aa18.37■□□□□ 0.53
VPS52-220ENST00000493674 PTPRMP28827 1452 aa18.37■□□□□ 0.53
VPS52-220ENST00000493674 UGGT1Q9NYU2 1555 aa18.37■□□□□ 0.53
VPS52-220ENST00000493674 TONSLQ96HA7 1378 aa18.36■□□□□ 0.53
VPS52-220ENST00000493674 ADGRB3O60242 1522 aa18.35■□□□□ 0.53
VPS52-220ENST00000493674 SPATA31E1Q6ZUB1 1445 aa18.35■□□□□ 0.53
VPS52-220ENST00000493674 PPLO60437 1756 aa18.35■□□□□ 0.53
VPS52-220ENST00000493674 ERVK-7P63135 1459 aa18.34■□□□□ 0.53
VPS52-220ENST00000493674 KDM5AP29375 1690 aaKnown RBP18.32■□□□□ 0.52
VPS52-220ENST00000493674 TMEM131LA2VDJ0 1609 aa18.3■□□□□ 0.52
VPS52-220ENST00000493674 PPP1R15AO75807 674 aaPredicted RBP18.29■□□□□ 0.52
VPS52-220ENST00000493674 SETD1BQ9UPS6 1966 aaKnown RBP18.29■□□□□ 0.52
VPS52-220ENST00000493674 TRPM1Q7Z4N2 1603 aa18.28■□□□□ 0.52
VPS52-220ENST00000493674 UHRF1BP1Q6BDS2 1440 aa18.28■□□□□ 0.52
VPS52-220ENST00000493674 L3MBTL2Q969R5 705 aa18.27■□□□□ 0.52
VPS52-220ENST00000493674 KIAA1210Q9ULL0 1709 aa18.26■□□□□ 0.51
VPS52-220ENST00000493674 MLECQ14165 292 aa18.24■□□□□ 0.51
VPS52-220ENST00000493674 ZMYM3Q14202 1370 aa18.24■□□□□ 0.51
VPS52-220ENST00000493674 UBR1Q8IWV7 1749 aa18.23■□□□□ 0.51
VPS52-220ENST00000493674 LAMC1P11047 1609 aa18.23■□□□□ 0.51
VPS52-220ENST00000493674 MYOM2P54296 1465 aa18.21■□□□□ 0.51
VPS52-220ENST00000493674 NEXMIFQ5QGS0 1516 aa18.21■□□□□ 0.51
VPS52-220ENST00000493674 RALGAPBQ86X10 1494 aa18.2■□□□□ 0.5
VPS52-220ENST00000493674 MYO3AQ8NEV4 1616 aa18.2■□□□□ 0.5
VPS52-220ENST00000493674 PRAG1Q86YV5 1406 aa18.19■□□□□ 0.5
VPS52-220ENST00000493674 ESF1Q9H501 851 aaKnown RBP18.19■□□□□ 0.5
VPS52-220ENST00000493674 NRXN1Q9ULB1 1477 aa18.19■□□□□ 0.5
VPS52-220ENST00000493674 ZNF142P52746 1687 aaPredicted RBP18.18■□□□□ 0.5
VPS52-220ENST00000493674 POLR1AO95602 1720 aaPredicted RBP18.18■□□□□ 0.5
VPS52-220ENST00000493674 SLC52A1Q9NWF4 448 aa18.17■□□□□ 0.5
VPS52-220ENST00000493674 FBXO31Q5XUX0 539 aaPredicted RBP18.16■□□□□ 0.5
VPS52-220ENST00000493674 NBPF8Q3BBV2 869 aa18.15■□□□□ 0.5
VPS52-220ENST00000493674 IQGAP1P46940 1657 aa18.15■□□□□ 0.5
VPS52-220ENST00000493674 LMTK3Q96Q04 1460 aa18.14■□□□□ 0.5
VPS52-220ENST00000493674 NLRP1Q9C000 1473 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms