RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 PLEKHH2Q8IVE3 1493 aa16.83■□□□□ 0.28
COL6A3-214ENST00000493608 KIAA1107Q9UPP5 1409 aa16.83■□□□□ 0.28
COL6A3-214ENST00000493608 LRRC9Q6ZRR7 1453 aa16.82■□□□□ 0.28
COL6A3-214ENST00000493608 REREQ9P2R6 1566 aa16.8■□□□□ 0.28
COL6A3-214ENST00000493608 ATP7AQ04656 1500 aa16.79■□□□□ 0.28
COL6A3-214ENST00000493608 MBD5Q9P267 1494 aa16.79■□□□□ 0.28
COL6A3-214ENST00000493608 HSPA2P54652 639 aa16.78■□□□□ 0.28
COL6A3-214ENST00000493608 AGLP35573 1532 aa16.77■□□□□ 0.28
COL6A3-214ENST00000493608 ESF1Q9H501 851 aaKnown RBP16.77■□□□□ 0.28
COL6A3-214ENST00000493608 INO80Q9ULG1 1556 aaPredicted RBP16.77■□□□□ 0.27
COL6A3-214ENST00000493608 CAMSAP2Q08AD1 1489 aa16.76■□□□□ 0.27
COL6A3-214ENST00000493608 LMTK3Q96Q04 1460 aa16.76■□□□□ 0.27
COL6A3-214ENST00000493608 PITPNM1O00562 1244 aa16.76■□□□□ 0.27
COL6A3-214ENST00000493608 SSUH2Q9Y2M2 353 aa16.75■□□□□ 0.27
COL6A3-214ENST00000493608 MAP3K1Q13233 1512 aa16.75■□□□□ 0.27
COL6A3-214ENST00000493608 A2MP01023 1474 aa16.73■□□□□ 0.27
COL6A3-214ENST00000493608 GGT6Q6P531 493 aa16.73■□□□□ 0.27
COL6A3-214ENST00000493608 C3P01024 1663 aa16.71■□□□□ 0.27
COL6A3-214ENST00000493608 SETD1BQ9UPS6 1966 aaKnown RBP16.7■□□□□ 0.26
COL6A3-214ENST00000493608 ADGBQ8N7X0 1667 aa16.7■□□□□ 0.26
COL6A3-214ENST00000493608 CCDC141Q6ZP82 1450 aa16.7■□□□□ 0.26
COL6A3-214ENST00000493608 RSPH4AQ5TD94 716 aa16.7■□□□□ 0.26
COL6A3-214ENST00000493608 ZNF692Q9BU19 519 aaPredicted RBP16.7■□□□□ 0.26
COL6A3-214ENST00000493608 RTEL1-TNFRSF6BF6WH68 1400 aa16.7■□□□□ 0.26
COL6A3-214ENST00000493608 TSPY4P0CV99 314 aa16.69■□□□□ 0.26
COL6A3-214ENST00000493608 TSPY10P0CW01 314 aa16.69■□□□□ 0.26
COL6A3-214ENST00000493608 PLXNC1O60486 1568 aa16.68■□□□□ 0.26
COL6A3-214ENST00000493608 MYOM3Q5VTT5 1437 aa16.68■□□□□ 0.26
COL6A3-214ENST00000493608 PREX1Q8TCU6 1659 aa16.67■□□□□ 0.26
COL6A3-214ENST00000493608 DHX29Q7Z478 1369 aaKnown RBP16.66■□□□□ 0.26
COL6A3-214ENST00000493608 CLTCQ00610 1675 aaKnown RBP16.66■□□□□ 0.26
COL6A3-214ENST00000493608 ZMYM3Q14202 1370 aa16.65■□□□□ 0.26
COL6A3-214ENST00000493608 ARHGEF5Q12774 1597 aa16.65■□□□□ 0.26
COL6A3-214ENST00000493608 CNTLNQ9NXG0 1405 aa16.65■□□□□ 0.26
COL6A3-214ENST00000493608 KIF3BO15066 747 aa16.65■□□□□ 0.26
COL6A3-214ENST00000493608 MIA2Q96PC5 1412 aa16.63■□□□□ 0.25
COL6A3-214ENST00000493608 PIP4P2Q8N4L2 257 aa16.63■□□□□ 0.25
COL6A3-214ENST00000493608 UHRF1BP1Q6BDS2 1440 aa16.62■□□□□ 0.25
COL6A3-214ENST00000493608 ILDR1Q86SU0 546 aaPredicted RBP16.62■□□□□ 0.25
COL6A3-214ENST00000493608 MROH2AA6NES4 1674 aa16.61■□□□□ 0.25
COL6A3-214ENST00000493608 FXR2P51116 673 aaKnown RBP eCLIP16.6■□□□□ 0.25
COL6A3-214ENST00000493608 PTPN23Q9H3S7 1636 aa16.59■□□□□ 0.25
COL6A3-214ENST00000493608 STRCQ7RTU9 1775 aa16.56■□□□□ 0.24
COL6A3-214ENST00000493608 MAST1Q9Y2H9 1570 aa16.56■□□□□ 0.24
COL6A3-214ENST00000493608 FGD6Q6ZV73 1430 aa16.56■□□□□ 0.24
COL6A3-214ENST00000493608 WASHC2CQ9Y4E1 1318 aa16.56■□□□□ 0.24
COL6A3-214ENST00000493608 FBXO31Q5XUX0 539 aaPredicted RBP16.55■□□□□ 0.24
COL6A3-214ENST00000493608 PPARGC1BQ86YN6 1023 aaKnown RBP16.55■□□□□ 0.24
COL6A3-214ENST00000493608 RRP7BPQ9NSQ0 103 aa16.55■□□□□ 0.24
COL6A3-214ENST00000493608 CHIC2Q9UKJ5 165 aa16.55■□□□□ 0.24
COL6A3-214ENST00000493608 ABCC5O15440 1437 aa16.54■□□□□ 0.24
COL6A3-214ENST00000493608 PTPRKQ15262 1439 aa16.54■□□□□ 0.24
COL6A3-214ENST00000493608 NPATQ14207 1427 aa16.53■□□□□ 0.24
COL6A3-214ENST00000493608 FAM50AQ14320 339 aaKnown RBP16.53■□□□□ 0.24
COL6A3-214ENST00000493608 SPDYE1Q8NFV5 336 aaPredicted RBP16.52■□□□□ 0.24
COL6A3-214ENST00000493608 DAPK1P53355 1430 aa16.52■□□□□ 0.23
COL6A3-214ENST00000493608 CROCC2H7BZ55 1655 aa16.51■□□□□ 0.23
COL6A3-214ENST00000493608 TCOF1Q13428 1488 aaKnown RBP16.51■□□□□ 0.23
COL6A3-214ENST00000493608 CFAP65Q6ZU64 1925 aaKnown RBP16.51■□□□□ 0.23
COL6A3-214ENST00000493608 KDM5DQ9BY66 1539 aa16.5■□□□□ 0.23
COL6A3-214ENST00000493608 DNMT1P26358 1616 aaKnown RBP16.49■□□□□ 0.23
COL6A3-214ENST00000493608 KIF15Q9NS87 1388 aa16.49■□□□□ 0.23
COL6A3-214ENST00000493608 DUOX2Q9NRD8 1548 aa16.48■□□□□ 0.23
COL6A3-214ENST00000493608 CAMSAP1Q5T5Y3 1602 aa16.48■□□□□ 0.23
COL6A3-214ENST00000493608 MYO3AQ8NEV4 1616 aa16.48■□□□□ 0.23
COL6A3-214ENST00000493608 NCKAP5LQ9HCH0 1330 aa16.47■□□□□ 0.23
COL6A3-214ENST00000493608 RNF17Q9BXT8 1623 aaKnown RBP16.47■□□□□ 0.23
COL6A3-214ENST00000493608 SHANK2Q9UPX8 1470 aa16.47■□□□□ 0.23
COL6A3-214ENST00000493608 NCOA1Q15788 1441 aa16.45■□□□□ 0.22
COL6A3-214ENST00000493608 EIF2AK4Q9P2K8 1649 aaKnown RBP16.45■□□□□ 0.22
COL6A3-214ENST00000493608 TNRQ92752 1358 aa16.45■□□□□ 0.22
COL6A3-214ENST00000493608 CEP170BQ9Y4F5 1589 aaPredicted RBP16.45■□□□□ 0.22
COL6A3-214ENST00000493608 CEP152O94986 1710 aa16.45■□□□□ 0.22
COL6A3-214ENST00000493608 PZPP20742 1482 aa16.44■□□□□ 0.22
COL6A3-214ENST00000493608 FBXO41Q8TF61 875 aa16.44■□□□□ 0.22
COL6A3-214ENST00000493608 CLEC11AQ9Y240 323 aa16.44■□□□□ 0.22
COL6A3-214ENST00000493608 MROH1Q8NDA8 1641 aa16.44■□□□□ 0.22
COL6A3-214ENST00000493608 ABCC3O15438 1527 aa16.44■□□□□ 0.22
COL6A3-214ENST00000493608 ZNF142P52746 1687 aaPredicted RBP16.43■□□□□ 0.22
COL6A3-214ENST00000493608 ANKRD30AQ9BXX3 1397 aa16.43■□□□□ 0.22
COL6A3-214ENST00000493608 CERKQ8TCT0 537 aa16.43■□□□□ 0.22
COL6A3-214ENST00000493608 FAM135AQ9P2D6 1515 aa16.42■□□□□ 0.22
COL6A3-214ENST00000493608 PTPRTO14522 1441 aa16.42■□□□□ 0.22
COL6A3-214ENST00000493608 A2ML1A8K2U0 1454 aa16.42■□□□□ 0.22
COL6A3-214ENST00000493608 ERBINQ96RT1 1412 aa16.4■□□□□ 0.22
COL6A3-214ENST00000493608 ZC3H13Q5T200 1668 aaKnown RBP16.4■□□□□ 0.22
COL6A3-214ENST00000493608 ITGAEP38570 1179 aa16.39■□□□□ 0.21
COL6A3-214ENST00000493608 PKD2Q13563 968 aa16.37■□□□□ 0.21
COL6A3-214ENST00000493608 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.36■□□□□ 0.21
COL6A3-214ENST00000493608 ADGRL2O95490 1459 aa16.35■□□□□ 0.21
COL6A3-214ENST00000493608 PLA2R1Q13018 1463 aa16.35■□□□□ 0.21
COL6A3-214ENST00000493608 PRDM15P57071 1507 aaPredicted RBP16.35■□□□□ 0.21
COL6A3-214ENST00000493608 THEMISQ8N1K5 641 aaPredicted RBP16.35■□□□□ 0.21
COL6A3-214ENST00000493608 KANK1Q14678 1352 aa16.35■□□□□ 0.21
COL6A3-214ENST00000493608 ERVK-7P63135 1459 aa16.35■□□□□ 0.21
COL6A3-214ENST00000493608 DEPDC5O75140 1603 aa16.34■□□□□ 0.21
COL6A3-214ENST00000493608 SPATA31D1Q6ZQQ2 1576 aa16.34■□□□□ 0.21
COL6A3-214ENST00000493608 ZNF335Q9H4Z2 1342 aaPredicted RBP16.33■□□□□ 0.2
COL6A3-214ENST00000493608 NLRP1Q9C000 1473 aa16.33■□□□□ 0.2
COL6A3-214ENST00000493608 UGGT1Q9NYU2 1555 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms