RNA–Protein interactions for RNA: ENST00000493256.1

LYSMD4-208, Transcript of LysM domain containing 4, humanhuman

TSL 3

Gene LYSMD4, Length 880 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4-208ENST00000493256 CEP170BQ9Y4F5 1589 aaPredicted RBP34.91■■■■□ 3.18
LYSMD4-208ENST00000493256 KDM5DQ9BY66 1539 aa34.91■■■■□ 3.18
LYSMD4-208ENST00000493256 FAM135AQ9P2D6 1515 aa34.9■■■■□ 3.18
LYSMD4-208ENST00000493256 APLP2Q06481 763 aa34.84■■■■□ 3.17
LYSMD4-208ENST00000493256 WASHC2CQ9Y4E1 1318 aa34.83■■■■□ 3.17
LYSMD4-208ENST00000493256 PZPP20742 1482 aa34.83■■■■□ 3.17
LYSMD4-208ENST00000493256 PLA2R1Q13018 1463 aa34.83■■■■□ 3.17
LYSMD4-208ENST00000493256 NCKAP5LQ9HCH0 1330 aa34.82■■■■□ 3.17
LYSMD4-208ENST00000493256 FBXO31Q5XUX0 539 aaPredicted RBP34.81■■■■□ 3.16
LYSMD4-208ENST00000493256 A2ML1A8K2U0 1454 aa34.8■■■■□ 3.16
LYSMD4-208ENST00000493256 RNF17Q9BXT8 1623 aaKnown RBP34.8■■■■□ 3.16
LYSMD4-208ENST00000493256 TNRQ92752 1358 aa34.78■■■■□ 3.16
LYSMD4-208ENST00000493256 TCOF1Q13428 1488 aaKnown RBP34.78■■■■□ 3.16
LYSMD4-208ENST00000493256 LTBP4Q8N2S1 1624 aa34.77■■■■□ 3.16
LYSMD4-208ENST00000493256 DNMT1P26358 1616 aaKnown RBP34.76■■■■□ 3.15
LYSMD4-208ENST00000493256 PTPN23Q9H3S7 1636 aa34.75■■■■□ 3.15
LYSMD4-208ENST00000493256 EIF2AK4Q9P2K8 1649 aaKnown RBP34.75■■■■□ 3.15
LYSMD4-208ENST00000493256 PKD2Q13563 968 aa34.75■■■■□ 3.15
LYSMD4-208ENST00000493256 CROCC2H7BZ55 1655 aa34.71■■■■□ 3.15
LYSMD4-208ENST00000493256 ABCC5O15440 1437 aa34.71■■■■□ 3.15
LYSMD4-208ENST00000493256 ABCC3O15438 1527 aa34.71■■■■□ 3.15
LYSMD4-208ENST00000493256 SHANK2Q9UPX8 1470 aa34.7■■■■□ 3.15
LYSMD4-208ENST00000493256 DUOX2Q9NRD8 1548 aa34.7■■■■□ 3.14
LYSMD4-208ENST00000493256 FGD6Q6ZV73 1430 aa34.69■■■■□ 3.14
LYSMD4-208ENST00000493256 MROH1Q8NDA8 1641 aa34.69■■■■□ 3.14
LYSMD4-208ENST00000493256 ZC3H13Q5T200 1668 aaKnown RBP34.69■■■■□ 3.14
LYSMD4-208ENST00000493256 KIF15Q9NS87 1388 aa34.65■■■■□ 3.14
LYSMD4-208ENST00000493256 DAPK1P53355 1430 aa34.64■■■■□ 3.14
LYSMD4-208ENST00000493256 ZNF335Q9H4Z2 1342 aaPredicted RBP34.63■■■■□ 3.13
LYSMD4-208ENST00000493256 NLRP1Q9C000 1473 aa34.62■■■■□ 3.13
LYSMD4-208ENST00000493256 IQSEC2Q5JU85 1478 aa34.6■■■■□ 3.13
LYSMD4-208ENST00000493256 CEP152O94986 1710 aa34.59■■■■□ 3.13
LYSMD4-208ENST00000493256 RRP7BPQ9NSQ0 103 aa34.59■■■■□ 3.13
LYSMD4-208ENST00000493256 POLR1AO95602 1720 aaPredicted RBP34.58■■■■□ 3.13
LYSMD4-208ENST00000493256 SPATA31D1Q6ZQQ2 1576 aa34.58■■■■□ 3.13
LYSMD4-208ENST00000493256 ERBINQ96RT1 1412 aa34.57■■■■□ 3.13
LYSMD4-208ENST00000493256 NEURL4Q96JN8 1562 aa34.57■■■■□ 3.12
LYSMD4-208ENST00000493256 UGGT1Q9NYU2 1555 aa34.56■■■■□ 3.12
LYSMD4-208ENST00000493256 ERVK-7P63135 1459 aa34.55■■■■□ 3.12
LYSMD4-208ENST00000493256 PRDM15P57071 1507 aaPredicted RBP34.55■■■■□ 3.12
LYSMD4-208ENST00000493256 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP34.54■■■■□ 3.12
LYSMD4-208ENST00000493256 THEMISQ8N1K5 641 aaPredicted RBP34.52■■■■□ 3.12
LYSMD4-208ENST00000493256 CHIC2Q9UKJ5 165 aa34.49■■■■□ 3.11
LYSMD4-208ENST00000493256 CFAP65Q6ZU64 1925 aaKnown RBP34.48■■■■□ 3.11
LYSMD4-208ENST00000493256 ANKLE2Q86XL3 938 aa34.48■■■■□ 3.11
LYSMD4-208ENST00000493256 ANKRD30AQ9BXX3 1397 aa34.48■■■■□ 3.11
LYSMD4-208ENST00000493256 DEPDC5O75140 1603 aa34.47■■■■□ 3.11
LYSMD4-208ENST00000493256 ARHGAP31Q2M1Z3 1444 aa34.44■■■■□ 3.1
LYSMD4-208ENST00000493256 GRWD1Q9BQ67 446 aaKnown RBP eCLIP34.43■■■■□ 3.1
LYSMD4-208ENST00000493256 MED14O60244 1454 aa34.4■■■■□ 3.1
LYSMD4-208ENST00000493256 FAM50AQ14320 339 aaKnown RBP34.39■■■■□ 3.1
LYSMD4-208ENST00000493256 ADGRL2O95490 1459 aa34.39■■■■□ 3.1
LYSMD4-208ENST00000493256 NPHP4O75161 1426 aaPredicted RBP34.38■■■■□ 3.09
LYSMD4-208ENST00000493256 KANK1Q14678 1352 aa34.37■■■■□ 3.09
LYSMD4-208ENST00000493256 UBR1Q8IWV7 1749 aa34.36■■■■□ 3.09
LYSMD4-208ENST00000493256 VWDEQ8N2E2 1590 aa34.34■■■■□ 3.09
LYSMD4-208ENST00000493256 IQGAP1P46940 1657 aa34.34■■■■□ 3.09
LYSMD4-208ENST00000493256 UBAP1LF5GYI3 381 aa34.33■■■■□ 3.09
LYSMD4-208ENST00000493256 CPS1P31327 1500 aa34.33■■■■□ 3.09
LYSMD4-208ENST00000493256 LMTK2Q8IWU2 1503 aa34.33■■■■□ 3.09
LYSMD4-208ENST00000493256 PIK3C2BO00750 1634 aa34.24■■■■□ 3.07
LYSMD4-208ENST00000493256 SCAF11Q99590 1463 aaKnown RBP34.24■■■■□ 3.07
LYSMD4-208ENST00000493256 ARHGAP23Q9P227 1491 aa34.24■■■■□ 3.07
LYSMD4-208ENST00000493256 ANKRD50Q9ULJ7 1429 aa34.23■■■■□ 3.07
LYSMD4-208ENST00000493256 SLIT1O75093 1534 aa34.23■■■■□ 3.07
LYSMD4-208ENST00000493256 EFCAB6Q5THR3 1501 aa34.23■■■■□ 3.07
LYSMD4-208ENST00000493256 LTKP29376 864 aa34.19■■■■□ 3.06
LYSMD4-208ENST00000493256 SYNMO15061 1565 aa34.19■■■■□ 3.06
LYSMD4-208ENST00000493256 STRCP1A6NGW2 1772 aa34.17■■■■□ 3.06
LYSMD4-208ENST00000493256 NOS1P29475 1434 aa34.16■■■■□ 3.06
LYSMD4-208ENST00000493256 TXNDC2Q86VQ3 553 aa34.16■■■■□ 3.06
LYSMD4-208ENST00000493256 DISP3Q9P2K9 1392 aa34.15■■■■□ 3.06
LYSMD4-208ENST00000493256 IDI1Q13907 227 aa34.14■■■■□ 3.06
LYSMD4-208ENST00000493256 KDM5AP29375 1690 aaKnown RBP34.13■■■■□ 3.05
LYSMD4-208ENST00000493256 TMEM2Q9UHN6 1383 aa34.12■■■■□ 3.05
LYSMD4-208ENST00000493256 STAG3Q9UJ98 1225 aa34.12■■■■□ 3.05
LYSMD4-208ENST00000493256 EID1Q9Y6B2 187 aa34.11■■■■□ 3.05
LYSMD4-208ENST00000493256 TOM1O60784 492 aa34.1■■■■□ 3.05
LYSMD4-208ENST00000493256 PPARGC1BQ86YN6 1023 aaKnown RBP34.08■■■■□ 3.05
LYSMD4-208ENST00000493256 LRRC7Q96NW7 1537 aa34.08■■■■□ 3.05
LYSMD4-208ENST00000493256 ROCK1Q13464 1354 aa34.08■■■■□ 3.05
LYSMD4-208ENST00000493256 RPRD2Q5VT52 1461 aaKnown RBP34.07■■■■□ 3.05
LYSMD4-208ENST00000493256 UNC13BO14795 1591 aa34.07■■■■□ 3.05
LYSMD4-208ENST00000493256 TET3O43151 1660 aa34.07■■■■□ 3.04
LYSMD4-208ENST00000493256 PIP4K2BP78356 416 aa34.07■■■■□ 3.04
LYSMD4-208ENST00000493256 SCAF1Q9H7N4 1312 aaKnown RBP34.06■■■■□ 3.04
LYSMD4-208ENST00000493256 ADGRB3O60242 1522 aa34.05■■■■□ 3.04
LYSMD4-208ENST00000493256 ALKQ9UM73 1620 aa34.04■■■■□ 3.04
LYSMD4-208ENST00000493256 SLC52A1Q9NWF4 448 aa34.02■■■■□ 3.04
LYSMD4-208ENST00000493256 GCC2Q8IWJ2 1684 aa34.01■■■■□ 3.04
LYSMD4-208ENST00000493256 ITGAEP38570 1179 aa33.98■■■■□ 3.03
LYSMD4-208ENST00000493256 HSPA1LP34931 641 aa33.97■■■■□ 3.03
LYSMD4-208ENST00000493256 ILDR2Q71H61 639 aa33.95■■■■□ 3.03
LYSMD4-208ENST00000493256 IQGAP3Q86VI3 1631 aa33.93■■■■□ 3.02
LYSMD4-208ENST00000493256 E9PCH4 1651 aa33.93■■■■□ 3.02
LYSMD4-208ENST00000493256 MYO5BQ9ULV0 1848 aa33.91■■■■□ 3.02
LYSMD4-208ENST00000493256 XIRP1Q702N8 1843 aaKnown RBP33.89■■■■□ 3.02
LYSMD4-208ENST00000493256 SLC26A8Q96RN1 970 aa33.88■■■■□ 3.01
LYSMD4-208ENST00000493256 TMEM131LA2VDJ0 1609 aa33.87■■■■□ 3.01
LYSMD4-208ENST00000493256 ZFYVE9O95405 1425 aa33.87■■■■□ 3.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms