RNA–Protein interactions for RNA: ENST00000492606.1

UBR4-215, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 3

Gene UBR4, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-215	ENST00000492606	SUPT6H	Q7KZ85	1726 aa	Known RBP	7.83	□□□□□ -1.16
UBR4-215	ENST00000492606	NHSL1	Q5SYE7	1610 aa		7.82	□□□□□ -1.16
UBR4-215	ENST00000492606	DISP1	Q96F81	1524 aa		7.82	□□□□□ -1.16
UBR4-215	ENST00000492606	RGL2	O15211	777 aa		7.81	□□□□□ -1.16
UBR4-215	ENST00000492606	ECM2	O94769	699 aa	Predicted RBP	7.81	□□□□□ -1.16
UBR4-215	ENST00000492606	HECW1	Q76N89	1606 aa		7.8	□□□□□ -1.16
UBR4-215	ENST00000492606	NEURL4	Q96JN8	1562 aa		7.8	□□□□□ -1.16
UBR4-215	ENST00000492606	FAM135B	Q49AJ0	1406 aa		7.79	□□□□□ -1.16
UBR4-215	ENST00000492606	HRC	P23327	699 aa		7.79	□□□□□ -1.16
UBR4-215	ENST00000492606	WRN	Q14191	1432 aa	Predicted RBP eCLIP	7.78	□□□□□ -1.16
UBR4-215	ENST00000492606	PSD	A5PKW4	1024 aa	Predicted RBP	7.78	□□□□□ -1.16
UBR4-215	ENST00000492606	ATAD2	Q6PL18	1390 aa		7.78	□□□□□ -1.16
UBR4-215	ENST00000492606	ATP10A	O60312	1499 aa		7.78	□□□□□ -1.16
UBR4-215	ENST00000492606	ZNF142	P52746	1687 aa	Predicted RBP	7.78	□□□□□ -1.16
UBR4-215	ENST00000492606	MAGI2	Q86UL8	1455 aa		7.77	□□□□□ -1.17
UBR4-215	ENST00000492606	PRELP	P51888	382 aa		7.77	□□□□□ -1.17
UBR4-215	ENST00000492606	C9orf84	Q5VXU9	1444 aa		7.77	□□□□□ -1.17
UBR4-215	ENST00000492606	BCL9L	Q86UU0	1499 aa		7.75	□□□□□ -1.17
UBR4-215	ENST00000492606	JCAD	Q9P266	1359 aa		7.75	□□□□□ -1.17
UBR4-215	ENST00000492606	MEX3C	Q5U5Q3	659 aa	Known RBP	7.75	□□□□□ -1.17
UBR4-215	ENST00000492606	ROBO1	Q9Y6N7	1651 aa		7.75	□□□□□ -1.17
UBR4-215	ENST00000492606	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	7.75	□□□□□ -1.17
UBR4-215	ENST00000492606	MYO3A	Q8NEV4	1616 aa		7.74	□□□□□ -1.17
UBR4-215	ENST00000492606	XIRP1	Q702N8	1843 aa	Known RBP	7.74	□□□□□ -1.17
UBR4-215	ENST00000492606	BBX	Q8WY36	941 aa	Predicted RBP	7.74	□□□□□ -1.17
UBR4-215	ENST00000492606	NPAT	Q14207	1427 aa		7.74	□□□□□ -1.17
UBR4-215	ENST00000492606	POLR1A	O95602	1720 aa	Predicted RBP	7.74	□□□□□ -1.17
UBR4-215	ENST00000492606	ABCA8	O94911	1581 aa		7.73	□□□□□ -1.17
UBR4-215	ENST00000492606	MNX1	P50219	401 aa	Predicted RBP	7.73	□□□□□ -1.17
UBR4-215	ENST00000492606	NUBP1	P53384	320 aa		7.73	□□□□□ -1.17
UBR4-215	ENST00000492606	HAP1	P54257	671 aa	Predicted RBP	7.72	□□□□□ -1.17
UBR4-215	ENST00000492606	RBM6	P78332	1123 aa	Known RBP	7.72	□□□□□ -1.17
UBR4-215	ENST00000492606	AKT1S1	Q96B36	256 aa		7.72	□□□□□ -1.17
UBR4-215	ENST00000492606	CDK13	Q14004	1512 aa	Known RBP	7.72	□□□□□ -1.17
UBR4-215	ENST00000492606	DEFB132	Q7Z7B7	95 aa		7.71	□□□□□ -1.18
UBR4-215	ENST00000492606	UTRN	P46939	3433 aa		7.71	□□□□□ -1.18
UBR4-215	ENST00000492606	PHLPP1	O60346	1717 aa		7.71	□□□□□ -1.18
UBR4-215	ENST00000492606	AFF2	P51816	1311 aa		7.71	□□□□□ -1.18
UBR4-215	ENST00000492606	COL13A1	Q5TAT6	717 aa	Predicted RBP	7.7	□□□□□ -1.18
UBR4-215	ENST00000492606	CCDC125	Q86Z20	511 aa		7.7	□□□□□ -1.18
UBR4-215	ENST00000492606	RNF25	Q96BH1	459 aa	Predicted RBP	7.7	□□□□□ -1.18
UBR4-215	ENST00000492606	CREBZF	Q9NS37	354 aa		7.7	□□□□□ -1.18
UBR4-215	ENST00000492606	SYNM	O15061	1565 aa		7.7	□□□□□ -1.18
UBR4-215	ENST00000492606	IQGAP2	Q13576	1575 aa		7.7	□□□□□ -1.18
UBR4-215	ENST00000492606	ARID3C	A6NKF2	412 aa		7.69	□□□□□ -1.18
UBR4-215	ENST00000492606	QTRT2	Q9H974	415 aa	Known RBP	7.69	□□□□□ -1.18
UBR4-215	ENST00000492606	ZBTB47	Q9UFB7	747 aa	Predicted RBP	7.69	□□□□□ -1.18
UBR4-215	ENST00000492606	CIZ1	Q9ULV3	898 aa	Predicted RBP	7.69	□□□□□ -1.18
UBR4-215	ENST00000492606	KDM2A	Q9Y2K7	1162 aa		7.69	□□□□□ -1.18
UBR4-215	ENST00000492606	CAMTA1	Q9Y6Y1	1673 aa		7.69	□□□□□ -1.18
UBR4-215	ENST00000492606	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	7.68	□□□□□ -1.18
UBR4-215	ENST00000492606	REM2	Q8IYK8	340 aa	Predicted RBP	7.68	□□□□□ -1.18
UBR4-215	ENST00000492606	DNMT1	P26358	1616 aa	Known RBP	7.67	□□□□□ -1.18
UBR4-215	ENST00000492606	SPDYE1	Q8NFV5	336 aa	Predicted RBP	7.67	□□□□□ -1.18
UBR4-215	ENST00000492606	ESF1	Q9H501	851 aa	Known RBP	7.67	□□□□□ -1.18
UBR4-215	ENST00000492606	SPATA31A6	Q5VVP1	1343 aa		7.67	□□□□□ -1.18
UBR4-215	ENST00000492606	COL16A1	Q07092	1604 aa	Predicted RBP	7.67	□□□□□ -1.18
UBR4-215	ENST00000492606	VSIG10	Q8N0Z9	540 aa		7.66	□□□□□ -1.18
UBR4-215	ENST00000492606	RBM42	Q9BTD8	480 aa	Known RBP	7.66	□□□□□ -1.18
UBR4-215	ENST00000492606	NWD1	Q149M9	1564 aa		7.66	□□□□□ -1.18
UBR4-215	ENST00000492606	AGL	P35573	1532 aa		7.65	□□□□□ -1.18
UBR4-215	ENST00000492606	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	7.65	□□□□□ -1.18
UBR4-215	ENST00000492606	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	7.65	□□□□□ -1.18
UBR4-215	ENST00000492606	ATP10B	O94823	1461 aa		7.64	□□□□□ -1.19
UBR4-215	ENST00000492606	ZMYM3	Q14202	1370 aa		7.64	□□□□□ -1.19
UBR4-215	ENST00000492606	PLEKHG5	O94827	1062 aa		7.64	□□□□□ -1.19
UBR4-215	ENST00000492606	MROH2A	A6NES4	1674 aa		7.63	□□□□□ -1.19
UBR4-215	ENST00000492606	NPHP4	O75161	1426 aa	Predicted RBP	7.63	□□□□□ -1.19
UBR4-215	ENST00000492606	CNTLN	Q9NXG0	1405 aa		7.63	□□□□□ -1.19
UBR4-215	ENST00000492606	TNS4	Q8IZW8	715 aa		7.63	□□□□□ -1.19
UBR4-215	ENST00000492606	KDM5C	P41229	1560 aa		7.63	□□□□□ -1.19
UBR4-215	ENST00000492606	A2ML1	A8K2U0	1454 aa		7.62	□□□□□ -1.19
UBR4-215	ENST00000492606	GIGYF1	O75420	1035 aa	Predicted RBP	7.62	□□□□□ -1.19
UBR4-215	ENST00000492606	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	7.62	□□□□□ -1.19
UBR4-215	ENST00000492606	UGGT2	Q9NYU1	1516 aa		7.62	□□□□□ -1.19
UBR4-215	ENST00000492606	SCAPER	Q9BY12	1400 aa		7.61	□□□□□ -1.19
UBR4-215	ENST00000492606	IGF1R	P08069	1367 aa		7.61	□□□□□ -1.19
UBR4-215	ENST00000492606	SHPRH	Q149N8	1683 aa		7.61	□□□□□ -1.19
UBR4-215	ENST00000492606	BIVM-ERCC5	R4GMW8	1640 aa		7.61	□□□□□ -1.19
UBR4-215	ENST00000492606	CHGA	P10645	457 aa	Known RBP	7.61	□□□□□ -1.19
UBR4-215	ENST00000492606	CFAP44	Q96MT7	982 aa		7.61	□□□□□ -1.19
UBR4-215	ENST00000492606	CLEC11A	Q9Y240	323 aa		7.61	□□□□□ -1.19
UBR4-215	ENST00000492606	CFAP74	Q9C0B2	1584 aa		7.61	□□□□□ -1.19
UBR4-215	ENST00000492606	MED14	O60244	1454 aa		7.61	□□□□□ -1.19
UBR4-215	ENST00000492606	SCAF11	Q99590	1463 aa	Known RBP	7.61	□□□□□ -1.19
UBR4-215	ENST00000492606	RTEL1-TNFRSF6B	F6WH68	1400 aa		7.61	□□□□□ -1.19
UBR4-215	ENST00000492606	BLM	P54132	1417 aa	Predicted RBP	7.61	□□□□□ -1.19
UBR4-215	ENST00000492606	FGD6	Q6ZV73	1430 aa		7.61	□□□□□ -1.19
UBR4-215	ENST00000492606	DIP2C	Q9Y2E4	1556 aa		7.6	□□□□□ -1.19
UBR4-215	ENST00000492606	PRR29	P0C7W0	189 aa		7.6	□□□□□ -1.19
UBR4-215	ENST00000492606	GSE1	Q14687	1217 aa		7.6	□□□□□ -1.19
UBR4-215	ENST00000492606	RASEF	Q8IZ41	740 aa		7.6	□□□□□ -1.19
UBR4-215	ENST00000492606	HS6ST3	Q8IZP7	471 aa		7.6	□□□□□ -1.19
UBR4-215	ENST00000492606	TSHZ2	Q9NRE2	1034 aa		7.6	□□□□□ -1.19
UBR4-215	ENST00000492606	IQGAP1	P46940	1657 aa		7.6	□□□□□ -1.19
UBR4-215	ENST00000492606	CHD4	Q14839	1912 aa		7.59	□□□□□ -1.19
UBR4-215	ENST00000492606	PITPNM1	O00562	1244 aa		7.59	□□□□□ -1.19
UBR4-215	ENST00000492606	R3HDM1	Q15032	1099 aa	Known RBP	7.59	□□□□□ -1.19
UBR4-215	ENST00000492606	ANKLE2	Q86XL3	938 aa		7.59	□□□□□ -1.19
UBR4-215	ENST00000492606	NGLY1	Q96IV0	654 aa		7.59	□□□□□ -1.19

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