RNA–Protein interactions for RNA: ENST00000491319.2

SMPD4-220, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 593 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-220ENST00000491319 LTBP4Q8N2S1 1624 aa24.86■■□□□ 1.57
SMPD4-220ENST00000491319 RNF17Q9BXT8 1623 aaKnown RBP24.86■■□□□ 1.57
SMPD4-220ENST00000491319 CROCC2H7BZ55 1655 aa24.85■■□□□ 1.57
SMPD4-220ENST00000491319 PLA2R1Q13018 1463 aa24.84■■□□□ 1.57
SMPD4-220ENST00000491319 DNMT1P26358 1616 aaKnown RBP24.84■■□□□ 1.57
SMPD4-220ENST00000491319 MIA2Q96PC5 1412 aa24.84■■□□□ 1.57
SMPD4-220ENST00000491319 EIF2AK4Q9P2K8 1649 aaKnown RBP24.83■■□□□ 1.57
SMPD4-220ENST00000491319 TSPY4P0CV99 314 aa24.83■■□□□ 1.57
SMPD4-220ENST00000491319 TSPY10P0CW01 314 aa24.83■■□□□ 1.57
SMPD4-220ENST00000491319 PZPP20742 1482 aa24.83■■□□□ 1.56
SMPD4-220ENST00000491319 A2ML1A8K2U0 1454 aa24.82■■□□□ 1.56
SMPD4-220ENST00000491319 POLR1AO95602 1720 aaPredicted RBP24.81■■□□□ 1.56
SMPD4-220ENST00000491319 TCOF1Q13428 1488 aaKnown RBP24.81■■□□□ 1.56
SMPD4-220ENST00000491319 ZC3H13Q5T200 1668 aaKnown RBP24.81■■□□□ 1.56
SMPD4-220ENST00000491319 NCKAP5LQ9HCH0 1330 aa24.8■■□□□ 1.56
SMPD4-220ENST00000491319 PTPN23Q9H3S7 1636 aa24.79■■□□□ 1.56
SMPD4-220ENST00000491319 CEP152O94986 1710 aa24.78■■□□□ 1.56
SMPD4-220ENST00000491319 MROH1Q8NDA8 1641 aa24.78■■□□□ 1.56
SMPD4-220ENST00000491319 TNRQ92752 1358 aa24.77■■□□□ 1.56
SMPD4-220ENST00000491319 FBXO31Q5XUX0 539 aaPredicted RBP24.76■■□□□ 1.55
SMPD4-220ENST00000491319 WASHC2CQ9Y4E1 1318 aa24.76■■□□□ 1.55
SMPD4-220ENST00000491319 ABCC3O15438 1527 aa24.75■■□□□ 1.55
SMPD4-220ENST00000491319 CFAP65Q6ZU64 1925 aaKnown RBP24.74■■□□□ 1.55
SMPD4-220ENST00000491319 PKD2Q13563 968 aa24.73■■□□□ 1.55
SMPD4-220ENST00000491319 DUOX2Q9NRD8 1548 aa24.72■■□□□ 1.55
SMPD4-220ENST00000491319 NEURL4Q96JN8 1562 aa24.71■■□□□ 1.55
SMPD4-220ENST00000491319 SHANK2Q9UPX8 1470 aa24.71■■□□□ 1.55
SMPD4-220ENST00000491319 APLP2Q06481 763 aa24.71■■□□□ 1.55
SMPD4-220ENST00000491319 IQSEC2Q5JU85 1478 aa24.7■■□□□ 1.55
SMPD4-220ENST00000491319 ZNF335Q9H4Z2 1342 aaPredicted RBP24.68■■□□□ 1.54
SMPD4-220ENST00000491319 ABCC5O15440 1437 aa24.68■■□□□ 1.54
SMPD4-220ENST00000491319 SPATA31D1Q6ZQQ2 1576 aa24.67■■□□□ 1.54
SMPD4-220ENST00000491319 NLRP1Q9C000 1473 aa24.67■■□□□ 1.54
SMPD4-220ENST00000491319 FGD6Q6ZV73 1430 aa24.67■■□□□ 1.54
SMPD4-220ENST00000491319 UGGT1Q9NYU2 1555 aa24.66■■□□□ 1.54
SMPD4-220ENST00000491319 PRDM15P57071 1507 aaPredicted RBP24.66■■□□□ 1.54
SMPD4-220ENST00000491319 DAPK1P53355 1430 aa24.65■■□□□ 1.54
SMPD4-220ENST00000491319 KIF15Q9NS87 1388 aa24.65■■□□□ 1.54
SMPD4-220ENST00000491319 DEPDC5O75140 1603 aa24.63■■□□□ 1.53
SMPD4-220ENST00000491319 ERVK-7P63135 1459 aa24.63■■□□□ 1.53
SMPD4-220ENST00000491319 ERBINQ96RT1 1412 aa24.61■■□□□ 1.53
SMPD4-220ENST00000491319 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.61■■□□□ 1.53
SMPD4-220ENST00000491319 UBR1Q8IWV7 1749 aa24.59■■□□□ 1.53
SMPD4-220ENST00000491319 IQGAP1P46940 1657 aa24.57■■□□□ 1.52
SMPD4-220ENST00000491319 RRP7BPQ9NSQ0 103 aa24.57■■□□□ 1.52
SMPD4-220ENST00000491319 THEMISQ8N1K5 641 aaPredicted RBP24.54■■□□□ 1.52
SMPD4-220ENST00000491319 VWDEQ8N2E2 1590 aa24.53■■□□□ 1.52
SMPD4-220ENST00000491319 MED14O60244 1454 aa24.52■■□□□ 1.52
SMPD4-220ENST00000491319 ANKLE2Q86XL3 938 aa24.52■■□□□ 1.52
SMPD4-220ENST00000491319 NPHP4O75161 1426 aaPredicted RBP24.51■■□□□ 1.51
SMPD4-220ENST00000491319 ARHGAP31Q2M1Z3 1444 aa24.51■■□□□ 1.51
SMPD4-220ENST00000491319 CPS1P31327 1500 aa24.51■■□□□ 1.51
SMPD4-220ENST00000491319 CHIC2Q9UKJ5 165 aa24.5■■□□□ 1.51
SMPD4-220ENST00000491319 ANKRD30AQ9BXX3 1397 aa24.5■■□□□ 1.51
SMPD4-220ENST00000491319 STRCP1A6NGW2 1772 aa24.49■■□□□ 1.51
SMPD4-220ENST00000491319 PIK3C2BO00750 1634 aa24.48■■□□□ 1.51
SMPD4-220ENST00000491319 ADGRL2O95490 1459 aa24.47■■□□□ 1.51
SMPD4-220ENST00000491319 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.47■■□□□ 1.517e-8■■■■□ 25
SMPD4-220ENST00000491319 UBAP1LF5GYI3 381 aa24.46■■□□□ 1.51
SMPD4-220ENST00000491319 LMTK2Q8IWU2 1503 aa24.45■■□□□ 1.5
SMPD4-220ENST00000491319 KANK1Q14678 1352 aa24.44■■□□□ 1.5
SMPD4-220ENST00000491319 FAM50AQ14320 339 aaKnown RBP24.42■■□□□ 1.5
SMPD4-220ENST00000491319 SLIT1O75093 1534 aa24.41■■□□□ 1.5
SMPD4-220ENST00000491319 EFCAB6Q5THR3 1501 aa24.41■■□□□ 1.5
SMPD4-220ENST00000491319 SCAF11Q99590 1463 aaKnown RBP24.41■■□□□ 1.5
SMPD4-220ENST00000491319 ARHGAP23Q9P227 1491 aa24.41■■□□□ 1.5
SMPD4-220ENST00000491319 SYNMO15061 1565 aa24.41■■□□□ 1.5
SMPD4-220ENST00000491319 KDM5AP29375 1690 aaKnown RBP24.4■■□□□ 1.5
SMPD4-220ENST00000491319 DISP3Q9P2K9 1392 aa24.4■■□□□ 1.5
SMPD4-220ENST00000491319 ANKRD50Q9ULJ7 1429 aa24.35■■□□□ 1.49
SMPD4-220ENST00000491319 ALKQ9UM73 1620 aa24.34■■□□□ 1.49
SMPD4-220ENST00000491319 TET3O43151 1660 aa24.34■■□□□ 1.49
SMPD4-220ENST00000491319 MYO5BQ9ULV0 1848 aa24.33■■□□□ 1.49
SMPD4-220ENST00000491319 GCC2Q8IWJ2 1684 aa24.33■■□□□ 1.49
SMPD4-220ENST00000491319 UNC13BO14795 1591 aa24.33■■□□□ 1.48
SMPD4-220ENST00000491319 LTKP29376 864 aa24.32■■□□□ 1.48
SMPD4-220ENST00000491319 NOS1P29475 1434 aa24.32■■□□□ 1.48
SMPD4-220ENST00000491319 LRRC7Q96NW7 1537 aa24.31■■□□□ 1.48
SMPD4-220ENST00000491319 XIRP1Q702N8 1843 aaKnown RBP24.31■■□□□ 1.48
SMPD4-220ENST00000491319 ADGRB3O60242 1522 aa24.3■■□□□ 1.48
SMPD4-220ENST00000491319 SCAF1Q9H7N4 1312 aaKnown RBP24.3■■□□□ 1.48
SMPD4-220ENST00000491319 TXNDC2Q86VQ3 553 aa24.29■■□□□ 1.48
SMPD4-220ENST00000491319 TMEM2Q9UHN6 1383 aa24.29■■□□□ 1.48
SMPD4-220ENST00000491319 PIP4K2BP78356 416 aa24.28■■□□□ 1.48
SMPD4-220ENST00000491319 TOM1O60784 492 aa24.27■■□□□ 1.48
SMPD4-220ENST00000491319 RPRD2Q5VT52 1461 aaKnown RBP24.26■■□□□ 1.47
SMPD4-220ENST00000491319 IDI1Q13907 227 aa24.26■■□□□ 1.47
SMPD4-220ENST00000491319 STAG3Q9UJ98 1225 aa24.26■■□□□ 1.47
SMPD4-220ENST00000491319 ILDR2Q71H61 639 aa24.25■■□□□ 1.47
SMPD4-220ENST00000491319 EID1Q9Y6B2 187 aa24.25■■□□□ 1.47
SMPD4-220ENST00000491319 E9PCH4 1651 aa24.24■■□□□ 1.47
SMPD4-220ENST00000491319 IQGAP3Q86VI3 1631 aa24.23■■□□□ 1.47
SMPD4-220ENST00000491319 HSPA1LP34931 641 aa24.22■■□□□ 1.47
SMPD4-220ENST00000491319 ROCK1Q13464 1354 aa24.21■■□□□ 1.47
SMPD4-220ENST00000491319 PPARGC1BQ86YN6 1023 aaKnown RBP24.19■■□□□ 1.46
SMPD4-220ENST00000491319 TMEM131LA2VDJ0 1609 aa24.19■■□□□ 1.46
SMPD4-220ENST00000491319 MED1Q15648 1581 aaPredicted RBP24.16■■□□□ 1.46
SMPD4-220ENST00000491319 SLC52A1Q9NWF4 448 aa24.16■■□□□ 1.46
SMPD4-220ENST00000491319 NWD1Q149M9 1564 aa24.13■■□□□ 1.45
SMPD4-220ENST00000491319 ZFYVE9O95405 1425 aa24.13■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms