RNA–Protein interactions for RNA: ENST00000488833.1

ATG9A-222, Transcript of autophagy related 9A, human

TSL 2

Gene ATG9A, Length 487 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATG9A-222	ENST00000488833	FAM135A	Q9P2D6	1515 aa		28.85	■■■□□ 2.21
ATG9A-222	ENST00000488833	MIA2	Q96PC5	1412 aa		28.85	■■■□□ 2.21
ATG9A-222	ENST00000488833	MAST1	Q9Y2H9	1570 aa		28.84	■■■□□ 2.21
ATG9A-222	ENST00000488833	PLA2R1	Q13018	1463 aa		28.79	■■■□□ 2.2
ATG9A-222	ENST00000488833	APLP2	Q06481	763 aa		28.79	■■■□□ 2.2
ATG9A-222	ENST00000488833	PZP	P20742	1482 aa		28.78	■■■□□ 2.2
ATG9A-222	ENST00000488833	NCKAP5L	Q9HCH0	1330 aa		28.77	■■■□□ 2.2
ATG9A-222	ENST00000488833	WASHC2C	Q9Y4E1	1318 aa		28.77	■■■□□ 2.2
ATG9A-222	ENST00000488833	A2ML1	A8K2U0	1454 aa		28.77	■■■□□ 2.2
ATG9A-222	ENST00000488833	RNF17	Q9BXT8	1623 aa	Known RBP	28.76	■■■□□ 2.2
ATG9A-222	ENST00000488833	TNR	Q92752	1358 aa		28.75	■■■□□ 2.19
ATG9A-222	ENST00000488833	LTBP4	Q8N2S1	1624 aa		28.74	■■■□□ 2.19
ATG9A-222	ENST00000488833	EIF2AK4	Q9P2K8	1649 aa	Known RBP	28.73	■■■□□ 2.19
ATG9A-222	ENST00000488833	FBXO31	Q5XUX0	539 aa	Predicted RBP	28.73	■■■□□ 2.19
ATG9A-222	ENST00000488833	DNMT1	P26358	1616 aa	Known RBP	28.72	■■■□□ 2.19
ATG9A-222	ENST00000488833	TCOF1	Q13428	1488 aa	Known RBP	28.72	■■■□□ 2.19
ATG9A-222	ENST00000488833	PKD2	Q13563	968 aa		28.71	■■■□□ 2.19
ATG9A-222	ENST00000488833	PTPN23	Q9H3S7	1636 aa		28.71	■■■□□ 2.19
ATG9A-222	ENST00000488833	CROCC2	H7BZ55	1655 aa		28.7	■■■□□ 2.19
ATG9A-222	ENST00000488833	ZC3H13	Q5T200	1668 aa	Known RBP	28.69	■■■□□ 2.18
ATG9A-222	ENST00000488833	ABCC3	O15438	1527 aa		28.68	■■■□□ 2.18
ATG9A-222	ENST00000488833	DUOX2	Q9NRD8	1548 aa		28.67	■■■□□ 2.18
ATG9A-222	ENST00000488833	SHANK2	Q9UPX8	1470 aa		28.66	■■■□□ 2.18
ATG9A-222	ENST00000488833	MROH1	Q8NDA8	1641 aa		28.65	■■■□□ 2.18
ATG9A-222	ENST00000488833	FGD6	Q6ZV73	1430 aa		28.64	■■■□□ 2.18
ATG9A-222	ENST00000488833	ABCC5	O15440	1437 aa		28.63	■■■□□ 2.17
ATG9A-222	ENST00000488833	POLR1A	O95602	1720 aa	Predicted RBP	28.63	■■■□□ 2.17
ATG9A-222	ENST00000488833	IQSEC2	Q5JU85	1478 aa		28.62	■■■□□ 2.17
ATG9A-222	ENST00000488833	NLRP1	Q9C000	1473 aa		28.62	■■■□□ 2.17
ATG9A-222	ENST00000488833	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	28.62	■■■□□ 2.17
ATG9A-222	ENST00000488833	KIF15	Q9NS87	1388 aa		28.62	■■■□□ 2.17
ATG9A-222	ENST00000488833	CEP152	O94986	1710 aa		28.61	■■■□□ 2.17
ATG9A-222	ENST00000488833	DAPK1	P53355	1430 aa		28.6	■■■□□ 2.17
ATG9A-222	ENST00000488833	ERBIN	Q96RT1	1412 aa		28.57	■■■□□ 2.16
ATG9A-222	ENST00000488833	SPATA31D1	Q6ZQQ2	1576 aa		28.57	■■■□□ 2.16
ATG9A-222	ENST00000488833	NEURL4	Q96JN8	1562 aa		28.57	■■■□□ 2.16
ATG9A-222	ENST00000488833	UGGT1	Q9NYU2	1555 aa		28.57	■■■□□ 2.16
ATG9A-222	ENST00000488833	ERVK-7	P63135	1459 aa		28.55	■■■□□ 2.16
ATG9A-222	ENST00000488833	RRP7BP	Q9NSQ0	103 aa		28.55	■■■□□ 2.16
ATG9A-222	ENST00000488833	PRDM15	P57071	1507 aa	Predicted RBP	28.54	■■■□□ 2.16
ATG9A-222	ENST00000488833	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	28.54	■■■□□ 2.16
ATG9A-222	ENST00000488833	THEMIS	Q8N1K5	641 aa	Predicted RBP	28.52	■■■□□ 2.16
ATG9A-222	ENST00000488833	CFAP65	Q6ZU64	1925 aa	Known RBP	28.51	■■■□□ 2.15
ATG9A-222	ENST00000488833	ANKLE2	Q86XL3	938 aa		28.49	■■■□□ 2.15
ATG9A-222	ENST00000488833	DEPDC5	O75140	1603 aa		28.48	■■■□□ 2.15
ATG9A-222	ENST00000488833	CHIC2	Q9UKJ5	165 aa		28.48	■■■□□ 2.15
ATG9A-222	ENST00000488833	ANKRD30A	Q9BXX3	1397 aa		28.48	■■■□□ 2.15
ATG9A-222	ENST00000488833	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	28.44	■■■□□ 2.14
ATG9A-222	ENST00000488833	ARHGAP31	Q2M1Z3	1444 aa		28.43	■■■□□ 2.14
ATG9A-222	ENST00000488833	NPHP4	O75161	1426 aa	Predicted RBP	28.43	■■■□□ 2.14
ATG9A-222	ENST00000488833	MED14	O60244	1454 aa		28.42	■■■□□ 2.14
ATG9A-222	ENST00000488833	KANK1	Q14678	1352 aa		28.42	■■■□□ 2.14
ATG9A-222	ENST00000488833	IQGAP1	P46940	1657 aa		28.41	■■■□□ 2.14
ATG9A-222	ENST00000488833	UBR1	Q8IWV7	1749 aa		28.4	■■■□□ 2.14
ATG9A-222	ENST00000488833	UBAP1L	F5GYI3	381 aa		28.4	■■■□□ 2.14
ATG9A-222	ENST00000488833	FAM50A	Q14320	339 aa	Known RBP	28.4	■■■□□ 2.14
ATG9A-222	ENST00000488833	CPS1	P31327	1500 aa		28.39	■■■□□ 2.14
ATG9A-222	ENST00000488833	ADGRL2	O95490	1459 aa		28.39	■■■□□ 2.13
ATG9A-222	ENST00000488833	VWDE	Q8N2E2	1590 aa		28.38	■■■□□ 2.13
ATG9A-222	ENST00000488833	LMTK2	Q8IWU2	1503 aa		28.34	■■■□□ 2.13
ATG9A-222	ENST00000488833	PIK3C2B	O00750	1634 aa		28.3	■■■□□ 2.12
ATG9A-222	ENST00000488833	SCAF11	Q99590	1463 aa	Known RBP	28.3	■■■□□ 2.12
ATG9A-222	ENST00000488833	EFCAB6	Q5THR3	1501 aa		28.28	■■■□□ 2.12
ATG9A-222	ENST00000488833	DISP3	Q9P2K9	1392 aa		28.28	■■■□□ 2.12
ATG9A-222	ENST00000488833	SLIT1	O75093	1534 aa		28.28	■■■□□ 2.12
ATG9A-222	ENST00000488833	ARHGAP23	Q9P227	1491 aa		28.27	■■■□□ 2.12
ATG9A-222	ENST00000488833	ANKRD50	Q9ULJ7	1429 aa		28.26	■■■□□ 2.12
ATG9A-222	ENST00000488833	SYNM	O15061	1565 aa		28.24	■■■□□ 2.11
ATG9A-222	ENST00000488833	STRCP1	A6NGW2	1772 aa		28.24	■■■□□ 2.11
ATG9A-222	ENST00000488833	STAG3	Q9UJ98	1225 aa		28.22	■■■□□ 2.11
ATG9A-222	ENST00000488833	SCAF1	Q9H7N4	1312 aa	Known RBP	28.21	■■■□□ 2.11
ATG9A-222	ENST00000488833	LTK	P29376	864 aa		28.21	■■■□□ 2.11
ATG9A-222	ENST00000488833	TXNDC2	Q86VQ3	553 aa		28.21	■■■□□ 2.11
ATG9A-222	ENST00000488833	KDM5A	P29375	1690 aa	Known RBP	28.21	■■■□□ 2.11
ATG9A-222	ENST00000488833	EID1	Q9Y6B2	187 aa		28.2	■■■□□ 2.1
ATG9A-222	ENST00000488833	NOS1	P29475	1434 aa		28.19	■■■□□ 2.1
ATG9A-222	ENST00000488833	TOM1	O60784	492 aa		28.19	■■■□□ 2.1
ATG9A-222	ENST00000488833	PIP4K2B	P78356	416 aa		28.18	■■■□□ 2.1
ATG9A-222	ENST00000488833	TMEM2	Q9UHN6	1383 aa		28.18	■■■□□ 2.1
ATG9A-222	ENST00000488833	IDI1	Q13907	227 aa		28.17	■■■□□ 2.1
ATG9A-222	ENST00000488833	LRRC7	Q96NW7	1537 aa		28.17	■■■□□ 2.1
ATG9A-222	ENST00000488833	TET3	O43151	1660 aa		28.16	■■■□□ 2.1
ATG9A-222	ENST00000488833	ADGRB3	O60242	1522 aa		28.16	■■■□□ 2.1
ATG9A-222	ENST00000488833	UNC13B	O14795	1591 aa		28.16	■■■□□ 2.1
ATG9A-222	ENST00000488833	RPRD2	Q5VT52	1461 aa	Known RBP	28.15	■■■□□ 2.1
ATG9A-222	ENST00000488833	ROCK1	Q13464	1354 aa		28.12	■■■□□ 2.09
ATG9A-222	ENST00000488833	GCC2	Q8IWJ2	1684 aa		28.12	■■■□□ 2.09
ATG9A-222	ENST00000488833	PPARGC1B	Q86YN6	1023 aa	Known RBP	28.11	■■■□□ 2.09
ATG9A-222	ENST00000488833	ALK	Q9UM73	1620 aa		28.1	■■■□□ 2.09
ATG9A-222	ENST00000488833	SLC52A1	Q9NWF4	448 aa		28.09	■■■□□ 2.09
ATG9A-222	ENST00000488833	HSPA1L	P34931	641 aa		28.08	■■■□□ 2.09
ATG9A-222	ENST00000488833	ITGAE	P38570	1179 aa		28.06	■■■□□ 2.08
ATG9A-222	ENST00000488833	ILDR2	Q71H61	639 aa		28.06	■■■□□ 2.08
ATG9A-222	ENST00000488833	IQGAP3	Q86VI3	1631 aa		28.03	■■■□□ 2.08
ATG9A-222	ENST00000488833	MYO5B	Q9ULV0	1848 aa		28.03	■■■□□ 2.08
ATG9A-222	ENST00000488833		E9PCH4	1651 aa		28.03	■■■□□ 2.08
ATG9A-222	ENST00000488833	XIRP1	Q702N8	1843 aa	Known RBP	28.02	■■■□□ 2.08
ATG9A-222	ENST00000488833	SLC26A8	Q96RN1	970 aa		27.99	■■■□□ 2.07
ATG9A-222	ENST00000488833	TMEM131L	A2VDJ0	1609 aa		27.97	■■■□□ 2.07
ATG9A-222	ENST00000488833	ZFYVE9	O95405	1425 aa		27.96	■■■□□ 2.07

Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms