RNA–Protein interactions for RNA: ENST00000488250.5

RAPGEF3-211, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 1,947 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-211ENST00000488250 PLA2R1Q13018 1463 aa22.41■■□□□ 1.18
RAPGEF3-211ENST00000488250 CCDC7Q96M83 1385 aa22.4■■□□□ 1.18
RAPGEF3-211ENST00000488250 CCDC144AA2RUR9 1427 aa22.4■■□□□ 1.18
RAPGEF3-211ENST00000488250 NPM1P06748 294 aaKnown RBP eCLIP22.39■■□□□ 1.17
RAPGEF3-211ENST00000488250 AFAP1Q8N556 730 aa22.39■■□□□ 1.17
RAPGEF3-211ENST00000488250 ADGRL1O94910 1474 aa22.39■■□□□ 1.17
RAPGEF3-211ENST00000488250 ATP7AQ04656 1500 aa22.38■■□□□ 1.17
RAPGEF3-211ENST00000488250 DEPDC5O75140 1603 aa22.37■■□□□ 1.17
RAPGEF3-211ENST00000488250 CNTLNQ9NXG0 1405 aa22.37■■□□□ 1.17
RAPGEF3-211ENST00000488250 KDM5CP41229 1560 aa22.36■■□□□ 1.17
RAPGEF3-211ENST00000488250 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.35■■□□□ 1.17
RAPGEF3-211ENST00000488250 SCAPERQ9BY12 1400 aa22.35■■□□□ 1.17
RAPGEF3-211ENST00000488250 C11orf95C9JLR9 678 aaPredicted RBP22.35■■□□□ 1.17
RAPGEF3-211ENST00000488250 USP47Q96K76 1375 aa22.34■■□□□ 1.17
RAPGEF3-211ENST00000488250 CYB5RLQ6IPT4 315 aa22.33■■□□□ 1.17
RAPGEF3-211ENST00000488250 CFAP74Q9C0B2 1584 aa22.33■■□□□ 1.16
RAPGEF3-211ENST00000488250 EIF2AK4Q9P2K8 1649 aaKnown RBP22.32■■□□□ 1.16
RAPGEF3-211ENST00000488250 KIF7Q2M1P5 1343 aa22.3■■□□□ 1.16
RAPGEF3-211ENST00000488250 ARID4BQ4LE39 1312 aaPredicted RBP22.29■■□□□ 1.16
RAPGEF3-211ENST00000488250 VWDEQ8N2E2 1590 aa22.29■■□□□ 1.16
RAPGEF3-211ENST00000488250 ZNF326Q5BKZ1 582 aaKnown RBP22.29■■□□□ 1.16
RAPGEF3-211ENST00000488250 DCAF11Q8TEB1 546 aa22.29■■□□□ 1.16
RAPGEF3-211ENST00000488250 ZNF518AQ6AHZ1 1483 aa22.28■■□□□ 1.16
RAPGEF3-211ENST00000488250 PRAG1Q86YV5 1406 aa22.28■■□□□ 1.16
RAPGEF3-211ENST00000488250 DHX29Q7Z478 1369 aaKnown RBP22.28■■□□□ 1.16
RAPGEF3-211ENST00000488250 CD109Q6YHK3 1445 aa22.27■■□□□ 1.16
RAPGEF3-211ENST00000488250 E9PCH4 1651 aa22.26■■□□□ 1.15
RAPGEF3-211ENST00000488250 A2MP01023 1474 aa22.26■■□□□ 1.15
RAPGEF3-211ENST00000488250 BCORL1Q5H9F3 1711 aa22.26■■□□□ 1.15
RAPGEF3-211ENST00000488250 TET3O43151 1660 aa22.25■■□□□ 1.15
RAPGEF3-211ENST00000488250 TRPM1Q7Z4N2 1603 aa22.25■■□□□ 1.15
RAPGEF3-211ENST00000488250 PRDM15P57071 1507 aaPredicted RBP22.24■■□□□ 1.15
RAPGEF3-211ENST00000488250 KIDINS220Q9ULH0 1771 aa22.24■■□□□ 1.15
RAPGEF3-211ENST00000488250 PTPRTO14522 1441 aa22.24■■□□□ 1.15
RAPGEF3-211ENST00000488250 CARD11Q9BXL7 1154 aa22.23■■□□□ 1.15
RAPGEF3-211ENST00000488250 TRPM2O94759 1503 aa22.23■■□□□ 1.15
RAPGEF3-211ENST00000488250 KDM2AQ9Y2K7 1162 aa22.23■■□□□ 1.15
RAPGEF3-211ENST00000488250 KANK1Q14678 1352 aa22.22■■□□□ 1.15
RAPGEF3-211ENST00000488250 LAMC1P11047 1609 aa22.22■■□□□ 1.15
RAPGEF3-211ENST00000488250 GPRASP1Q5JY77 1395 aa22.21■■□□□ 1.15
RAPGEF3-211ENST00000488250 POGZQ7Z3K3 1410 aa22.21■■□□□ 1.15
RAPGEF3-211ENST00000488250 MROH1Q8NDA8 1641 aa22.21■■□□□ 1.15
RAPGEF3-211ENST00000488250 SPHKAPQ2M3C7 1700 aa22.19■■□□□ 1.14
RAPGEF3-211ENST00000488250 MLH3Q9UHC1 1453 aa22.19■■□□□ 1.14
RAPGEF3-211ENST00000488250 NEO1Q92859 1461 aa22.19■■□□□ 1.14
RAPGEF3-211ENST00000488250 ROCK2O75116 1388 aaKnown RBP22.18■■□□□ 1.14
RAPGEF3-211ENST00000488250 NEURL4Q96JN8 1562 aa22.16■■□□□ 1.14
RAPGEF3-211ENST00000488250 RGL3Q3MIN7 710 aa22.16■■□□□ 1.14
RAPGEF3-211ENST00000488250 CEP152O94986 1710 aa22.15■■□□□ 1.14
RAPGEF3-211ENST00000488250 RNF17Q9BXT8 1623 aaKnown RBP22.15■■□□□ 1.14
RAPGEF3-211ENST00000488250 KIF3BO15066 747 aa22.15■■□□□ 1.14
RAPGEF3-211ENST00000488250 PRKRIP1Q9H875 184 aaPredicted RBP22.15■■□□□ 1.14
RAPGEF3-211ENST00000488250 LMTK2Q8IWU2 1503 aa22.14■■□□□ 1.14
RAPGEF3-211ENST00000488250 STAC3Q96MF2 364 aa22.14■■□□□ 1.14
RAPGEF3-211ENST00000488250 HECW2Q9P2P5 1572 aa22.13■■□□□ 1.13
RAPGEF3-211ENST00000488250 MYT1LQ9UL68 1186 aa22.12■■□□□ 1.13
RAPGEF3-211ENST00000488250 CLTCL1P53675 1640 aa22.12■■□□□ 1.13
RAPGEF3-211ENST00000488250 ST20-MTHFSA0A0A6YYL1 179 aa22.11■■□□□ 1.13
RAPGEF3-211ENST00000488250 EFCAB6Q5THR3 1501 aa22.11■■□□□ 1.13
RAPGEF3-211ENST00000488250 GLI2P10070 1586 aa22.1■■□□□ 1.13
RAPGEF3-211ENST00000488250 MAP3K4Q9Y6R4 1608 aa22.09■■□□□ 1.13
RAPGEF3-211ENST00000488250 FRMPD1Q5SYB0 1578 aa22.09■■□□□ 1.13
RAPGEF3-211ENST00000488250 MADDQ8WXG6 1647 aa22.07■■□□□ 1.12
RAPGEF3-211ENST00000488250 NBPF1Q3BBV0 1214 aa22.06■■□□□ 1.12
RAPGEF3-211ENST00000488250 PPRC1Q5VV67 1664 aaKnown RBP22.04■■□□□ 1.12
RAPGEF3-211ENST00000488250 ABCA6Q8N139 1617 aa22.04■■□□□ 1.12
RAPGEF3-211ENST00000488250 DIP2BQ9P265 1576 aa22■■□□□ 1.11
RAPGEF3-211ENST00000488250 RICTORQ6R327 1708 aa22■■□□□ 1.11
RAPGEF3-211ENST00000488250 COL17A1Q9UMD9 1497 aaPredicted RBP21.99■■□□□ 1.11
RAPGEF3-211ENST00000488250 DIP2CQ9Y2E4 1556 aa21.98■■□□□ 1.11
RAPGEF3-211ENST00000488250 KIAA1210Q9ULL0 1709 aa21.98■■□□□ 1.11
RAPGEF3-211ENST00000488250 CCDC184Q52MB2 194 aa21.97■■□□□ 1.11
RAPGEF3-211ENST00000488250 TESK2Q96S53 571 aa21.97■■□□□ 1.11
RAPGEF3-211ENST00000488250 POLR3GLQ9BT43 218 aa21.97■■□□□ 1.11
RAPGEF3-211ENST00000488250 MYOM2P54296 1465 aa21.97■■□□□ 1.11
RAPGEF3-211ENST00000488250 KTN1Q86UP2 1357 aaKnown RBP21.96■■□□□ 1.11
RAPGEF3-211ENST00000488250 IQGAP1P46940 1657 aa21.96■■□□□ 1.11
RAPGEF3-211ENST00000488250 KIF1BO60333 1816 aa21.96■■□□□ 1.11
RAPGEF3-211ENST00000488250 MRS2Q9HD23 443 aa21.95■■□□□ 1.1
RAPGEF3-211ENST00000488250 KIF13AQ9H1H9 1805 aa21.94■■□□□ 1.1
RAPGEF3-211ENST00000488250 ABCC3O15438 1527 aa21.94■■□□□ 1.1
RAPGEF3-211ENST00000488250 RAPGEF3O95398 923 aa21.94■■□□□ 1.1
RAPGEF3-211ENST00000488250 UGGT1Q9NYU2 1555 aa21.93■■□□□ 1.1
RAPGEF3-211ENST00000488250 NPATQ14207 1427 aa21.93■■□□□ 1.1
RAPGEF3-211ENST00000488250 IFT172Q9UG01 1749 aa21.92■■□□□ 1.1
RAPGEF3-211ENST00000488250 HNRNPUQ00839 825 aaKnown RBP eCLIP21.92■■□□□ 1.1
RAPGEF3-211ENST00000488250 SUPT16HQ9Y5B9 1047 aaKnown RBP21.91■■□□□ 1.1
RAPGEF3-211ENST00000488250 ADGRB3O60242 1522 aa21.91■■□□□ 1.1
RAPGEF3-211ENST00000488250 SCAF11Q99590 1463 aaKnown RBP21.91■■□□□ 1.1
RAPGEF3-211ENST00000488250 ZMYM4Q5VZL5 1548 aa21.9■■□□□ 1.1
RAPGEF3-211ENST00000488250 NRXN1Q9ULB1 1477 aa21.89■■□□□ 1.1
RAPGEF3-211ENST00000488250 DISP3Q9P2K9 1392 aa21.89■■□□□ 1.09
RAPGEF3-211ENST00000488250 TMF1P82094 1093 aa21.88■■□□□ 1.09
RAPGEF3-211ENST00000488250 CAMSAP1Q5T5Y3 1602 aa21.88■■□□□ 1.09
RAPGEF3-211ENST00000488250 MROH2AA6NES4 1674 aa21.88■■□□□ 1.09
RAPGEF3-211ENST00000488250 ZC3H13Q5T200 1668 aaKnown RBP21.87■■□□□ 1.09
RAPGEF3-211ENST00000488250 GGT6Q6P531 493 aa21.87■■□□□ 1.09
RAPGEF3-211ENST00000488250 RALBP1Q15311 655 aa21.86■■□□□ 1.09
RAPGEF3-211ENST00000488250 ARHGAP31Q2M1Z3 1444 aa21.86■■□□□ 1.09
RAPGEF3-211ENST00000488250 WASHC2CQ9Y4E1 1318 aa21.85■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms