RNA–Protein interactions for RNA: ENST00000487215.1

SMPDL3A-202, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2

Gene SMPDL3A, Length 903 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-202ENST00000487215 UBAP1LF5GYI3 381 aa31.23■■■□□ 2.59
SMPDL3A-202ENST00000487215 SOCS7O14512 581 aa31.23■■■□□ 2.59
SMPDL3A-202ENST00000487215 KIF3BO15066 747 aa31.22■■■□□ 2.59
SMPDL3A-202ENST00000487215 KDM5DQ9BY66 1539 aa31.21■■■□□ 2.59
SMPDL3A-202ENST00000487215 FAM135AQ9P2D6 1515 aa31.19■■■□□ 2.58
SMPDL3A-202ENST00000487215 TNRQ92752 1358 aa31.19■■■□□ 2.58
SMPDL3A-202ENST00000487215 FBXO31Q5XUX0 539 aaPredicted RBP31.19■■■□□ 2.58
SMPDL3A-202ENST00000487215 PZPP20742 1482 aa31.19■■■□□ 2.58
SMPDL3A-202ENST00000487215 RSPH4AQ5TD94 716 aa31.16■■■□□ 2.58
SMPDL3A-202ENST00000487215 NEURL4Q96JN8 1562 aa31.14■■■□□ 2.58
SMPDL3A-202ENST00000487215 POLR1AO95602 1720 aaPredicted RBP31.12■■■□□ 2.57
SMPDL3A-202ENST00000487215 WASHC2CQ9Y4E1 1318 aa31.12■■■□□ 2.57
SMPDL3A-202ENST00000487215 ARHGEF5Q12774 1597 aa31.12■■■□□ 2.57
SMPDL3A-202ENST00000487215 MIA2Q96PC5 1412 aa31.07■■■□□ 2.56
SMPDL3A-202ENST00000487215 CPS1P31327 1500 aa31.05■■■□□ 2.56
SMPDL3A-202ENST00000487215 TSPY4P0CV99 314 aa31.05■■■□□ 2.56
SMPDL3A-202ENST00000487215 TSPY10P0CW01 314 aa31.05■■■□□ 2.56
SMPDL3A-202ENST00000487215 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.05■■■□□ 2.56
SMPDL3A-202ENST00000487215 NLRP1Q9C000 1473 aa31.04■■■□□ 2.56
SMPDL3A-202ENST00000487215 SHANK2Q9UPX8 1470 aa31.03■■■□□ 2.56
SMPDL3A-202ENST00000487215 LRRC9Q6ZRR7 1453 aa31.01■■■□□ 2.56
SMPDL3A-202ENST00000487215 UGGT1Q9NYU2 1555 aa31.01■■■□□ 2.56
SMPDL3A-202ENST00000487215 ANKLE2Q86XL3 938 aa31.01■■■□□ 2.55
SMPDL3A-202ENST00000487215 THEMISQ8N1K5 641 aaPredicted RBP31■■■□□ 2.55
SMPDL3A-202ENST00000487215 RNF17Q9BXT8 1623 aaKnown RBP30.99■■■□□ 2.55
SMPDL3A-202ENST00000487215 VPS8Q8N3P4 1428 aa30.98■■■□□ 2.55
SMPDL3A-202ENST00000487215 VWDEQ8N2E2 1590 aa30.98■■■□□ 2.55
SMPDL3A-202ENST00000487215 MAST1Q9Y2H9 1570 aa30.98■■■□□ 2.55
SMPDL3A-202ENST00000487215 ABCC3O15438 1527 aa30.97■■■□□ 2.55
SMPDL3A-202ENST00000487215 MED14O60244 1454 aa30.96■■■□□ 2.55
SMPDL3A-202ENST00000487215 DEPDC5O75140 1603 aa30.96■■■□□ 2.55
SMPDL3A-202ENST00000487215 NPHP4O75161 1426 aaPredicted RBP30.96■■■□□ 2.55
SMPDL3A-202ENST00000487215 SCAF1Q9H7N4 1312 aaKnown RBP30.96■■■□□ 2.55
SMPDL3A-202ENST00000487215 ZC3H13Q5T200 1668 aaKnown RBP30.94■■■□□ 2.54
SMPDL3A-202ENST00000487215 TOM1O60784 492 aa30.94■■■□□ 2.54
SMPDL3A-202ENST00000487215 PIP4K2BP78356 416 aa30.94■■■□□ 2.54
SMPDL3A-202ENST00000487215 HSPA1LP34931 641 aa30.93■■■□□ 2.54
SMPDL3A-202ENST00000487215 EIF2AK4Q9P2K8 1649 aaKnown RBP30.91■■■□□ 2.54
SMPDL3A-202ENST00000487215 MROH1Q8NDA8 1641 aa30.89■■■□□ 2.54
SMPDL3A-202ENST00000487215 ERVK-7P63135 1459 aa30.89■■■□□ 2.53
SMPDL3A-202ENST00000487215 IQGAP1P46940 1657 aa30.88■■■□□ 2.53
SMPDL3A-202ENST00000487215 KANK4Q5T7N3 995 aaPredicted RBP30.88■■■□□ 2.53
SMPDL3A-202ENST00000487215 MAP3K1Q13233 1512 aa30.85■■■□□ 2.53
SMPDL3A-202ENST00000487215 MYOM3Q5VTT5 1437 aa30.85■■■□□ 2.53
SMPDL3A-202ENST00000487215 ALKQ9UM73 1620 aa30.84■■■□□ 2.53
SMPDL3A-202ENST00000487215 MED1Q15648 1581 aaPredicted RBP30.83■■■□□ 2.53
SMPDL3A-202ENST00000487215 LOC105371045A0A1W2PR82 267 aa30.82■■■□□ 2.52
SMPDL3A-202ENST00000487215 CEP152O94986 1710 aa30.81■■■□□ 2.52
SMPDL3A-202ENST00000487215 DUOX2Q9NRD8 1548 aa30.8■■■□□ 2.52
SMPDL3A-202ENST00000487215 STRCP1A6NGW2 1772 aa30.78■■■□□ 2.52
SMPDL3A-202ENST00000487215 LRRC7Q96NW7 1537 aa30.77■■■□□ 2.52
SMPDL3A-202ENST00000487215 UBR1Q8IWV7 1749 aa30.76■■■□□ 2.52
SMPDL3A-202ENST00000487215 SYNMO15061 1565 aa30.74■■■□□ 2.51
SMPDL3A-202ENST00000487215 KIF15Q9NS87 1388 aa30.73■■■□□ 2.51
SMPDL3A-202ENST00000487215 PRDM15P57071 1507 aaPredicted RBP30.73■■■□□ 2.51
SMPDL3A-202ENST00000487215 SCAF11Q99590 1463 aaKnown RBP30.72■■■□□ 2.51
SMPDL3A-202ENST00000487215 ARHGAP31Q2M1Z3 1444 aa30.7■■■□□ 2.5
SMPDL3A-202ENST00000487215 CROCC2H7BZ55 1655 aa30.69■■■□□ 2.5
SMPDL3A-202ENST00000487215 ABCC5O15440 1437 aa30.69■■■□□ 2.5
SMPDL3A-202ENST00000487215 ERBINQ96RT1 1412 aa30.69■■■□□ 2.5
SMPDL3A-202ENST00000487215 ARHGAP23Q9P227 1491 aa30.69■■■□□ 2.5
SMPDL3A-202ENST00000487215 SLIT1O75093 1534 aa30.68■■■□□ 2.5
SMPDL3A-202ENST00000487215 CFAP65Q6ZU64 1925 aaKnown RBP30.67■■■□□ 2.5
SMPDL3A-202ENST00000487215 LTKP29376 864 aa30.66■■■□□ 2.5
SMPDL3A-202ENST00000487215 RRP7BPQ9NSQ0 103 aa30.65■■■□□ 2.5
SMPDL3A-202ENST00000487215 PTPN23Q9H3S7 1636 aa30.65■■■□□ 2.5
SMPDL3A-202ENST00000487215 TXNDC2Q86VQ3 553 aa30.63■■■□□ 2.49
SMPDL3A-202ENST00000487215 SENP3Q9H4L4 574 aaPredicted RBP30.61■■■□□ 2.49
SMPDL3A-202ENST00000487215 DAPK1P53355 1430 aa30.61■■■□□ 2.49
SMPDL3A-202ENST00000487215 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.6■■■□□ 2.49
SMPDL3A-202ENST00000487215 PIK3C2BO00750 1634 aa30.59■■■□□ 2.49
SMPDL3A-202ENST00000487215 PHF23Q9BUL5 403 aaPredicted RBP30.59■■■□□ 2.49
SMPDL3A-202ENST00000487215 EID1Q9Y6B2 187 aa30.57■■■□□ 2.48
SMPDL3A-202ENST00000487215 KANK1Q14678 1352 aa30.55■■■□□ 2.48
SMPDL3A-202ENST00000487215 TMEM2Q9UHN6 1383 aa30.55■■■□□ 2.48
SMPDL3A-202ENST00000487215 FGD6Q6ZV73 1430 aa30.55■■■□□ 2.48
SMPDL3A-202ENST00000487215 LMTK2Q8IWU2 1503 aa30.52■■■□□ 2.48
SMPDL3A-202ENST00000487215 APLP2Q06481 763 aa30.52■■■□□ 2.48
SMPDL3A-202ENST00000487215 XIRP1Q702N8 1843 aaKnown RBP30.52■■■□□ 2.48
SMPDL3A-202ENST00000487215 STAG3Q9UJ98 1225 aa30.5■■■□□ 2.47
SMPDL3A-202ENST00000487215 EFCAB6Q5THR3 1501 aa30.5■■■□□ 2.47
SMPDL3A-202ENST00000487215 ANKRD30AQ9BXX3 1397 aa30.5■■■□□ 2.47
SMPDL3A-202ENST00000487215 KDM5AP29375 1690 aaKnown RBP30.49■■■□□ 2.47
SMPDL3A-202ENST00000487215 CHIC2Q9UKJ5 165 aa30.48■■■□□ 2.47
SMPDL3A-202ENST00000487215 IDI1Q13907 227 aa30.47■■■□□ 2.47
SMPDL3A-202ENST00000487215 NOS1P29475 1434 aa30.42■■■□□ 2.46
SMPDL3A-202ENST00000487215 TMEM94Q12767 1356 aa30.41■■■□□ 2.46
SMPDL3A-202ENST00000487215 TET3O43151 1660 aa30.4■■■□□ 2.46
SMPDL3A-202ENST00000487215 ADGRB3O60242 1522 aa30.4■■■□□ 2.46
SMPDL3A-202ENST00000487215 FAM135BQ49AJ0 1406 aa30.39■■■□□ 2.45
SMPDL3A-202ENST00000487215 KCNA6P17658 529 aa30.38■■■□□ 2.45
SMPDL3A-202ENST00000487215 ADGRL2O95490 1459 aa30.38■■■□□ 2.45
SMPDL3A-202ENST00000487215 SLC26A8Q96RN1 970 aa30.37■■■□□ 2.45
SMPDL3A-202ENST00000487215 RGS17Q9UGC6 210 aaPredicted RBP30.34■■■□□ 2.45
SMPDL3A-202ENST00000487215 PROSER2Q86WR7 435 aaPredicted RBP30.32■■■□□ 2.44
SMPDL3A-202ENST00000487215 SLC52A1Q9NWF4 448 aa30.32■■■□□ 2.44
SMPDL3A-202ENST00000487215 NWD1Q149M9 1564 aa30.32■■■□□ 2.44
SMPDL3A-202ENST00000487215 RBM33Q96EV2 1170 aaKnown RBP30.31■■■□□ 2.44
SMPDL3A-202ENST00000487215 NKTRP30414 1462 aaKnown RBP30.31■■■□□ 2.44
SMPDL3A-202ENST00000487215 RPRD2Q5VT52 1461 aaKnown RBP30.29■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms