RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 INO80Q9ULG1 1556 aaPredicted RBP13.73□□□□□ -0.21
COL12A1-208ENST00000486533 PREX1Q8TCU6 1659 aa13.72□□□□□ -0.21
COL12A1-208ENST00000486533 ILDR1Q86SU0 546 aaPredicted RBP13.71□□□□□ -0.21
COL12A1-208ENST00000486533 C3P01024 1663 aa13.7□□□□□ -0.22
COL12A1-208ENST00000486533 A2MP01023 1474 aa13.69□□□□□ -0.22
COL12A1-208ENST00000486533 LRRC9Q6ZRR7 1453 aa13.69□□□□□ -0.22
COL12A1-208ENST00000486533 MBD5Q9P267 1494 aa13.69□□□□□ -0.22
COL12A1-208ENST00000486533 CAMSAP2Q08AD1 1489 aa13.68□□□□□ -0.22
COL12A1-208ENST00000486533 PLXNC1O60486 1568 aa13.68□□□□□ -0.22
COL12A1-208ENST00000486533 UHRF1BP1Q6BDS2 1440 aa13.68□□□□□ -0.22
COL12A1-208ENST00000486533 CNTLNQ9NXG0 1405 aa13.68□□□□□ -0.22
COL12A1-208ENST00000486533 ADGBQ8N7X0 1667 aa13.67□□□□□ -0.22
COL12A1-208ENST00000486533 SETD1BQ9UPS6 1966 aaKnown RBP13.67□□□□□ -0.22
COL12A1-208ENST00000486533 CCDC141Q6ZP82 1450 aa13.66□□□□□ -0.22
COL12A1-208ENST00000486533 PPARGC1BQ86YN6 1023 aaKnown RBP13.65□□□□□ -0.22
COL12A1-208ENST00000486533 MAP3K1Q13233 1512 aa13.64□□□□□ -0.23
COL12A1-208ENST00000486533 KANK4Q5T7N3 995 aaPredicted RBP13.64□□□□□ -0.23
COL12A1-208ENST00000486533 GGT6Q6P531 493 aa13.64□□□□□ -0.23
COL12A1-208ENST00000486533 RTEL1-TNFRSF6BF6WH68 1400 aa13.64□□□□□ -0.23
COL12A1-208ENST00000486533 MROH2AA6NES4 1674 aa13.64□□□□□ -0.23
COL12A1-208ENST00000486533 CLTCQ00610 1675 aaKnown RBP13.63□□□□□ -0.23
COL12A1-208ENST00000486533 ZMYM3Q14202 1370 aa13.62□□□□□ -0.23
COL12A1-208ENST00000486533 RSPH4AQ5TD94 716 aa13.62□□□□□ -0.23
COL12A1-208ENST00000486533 ARHGEF5Q12774 1597 aa13.6□□□□□ -0.23
COL12A1-208ENST00000486533 DHX29Q7Z478 1369 aaKnown RBP13.6□□□□□ -0.23
COL12A1-208ENST00000486533 TSPY4P0CV99 314 aa13.6□□□□□ -0.23
COL12A1-208ENST00000486533 TSPY10P0CW01 314 aa13.6□□□□□ -0.23
COL12A1-208ENST00000486533 NPATQ14207 1427 aa13.59□□□□□ -0.23
COL12A1-208ENST00000486533 MYOM3Q5VTT5 1437 aa13.59□□□□□ -0.23
COL12A1-208ENST00000486533 STRCQ7RTU9 1775 aa13.58□□□□□ -0.24
COL12A1-208ENST00000486533 KIF3BO15066 747 aa13.58□□□□□ -0.24
COL12A1-208ENST00000486533 FBXO41Q8TF61 875 aa13.57□□□□□ -0.24
COL12A1-208ENST00000486533 RBM42Q9BTD8 480 aaKnown RBP13.57□□□□□ -0.24
COL12A1-208ENST00000486533 MIA2Q96PC5 1412 aa13.57□□□□□ -0.24
COL12A1-208ENST00000486533 ATXN8OSP0DMR3 200 aa13.56□□□□□ -0.24
COL12A1-208ENST00000486533 MYO3AQ8NEV4 1616 aa13.54□□□□□ -0.24
COL12A1-208ENST00000486533 PTPRKQ15262 1439 aa13.54□□□□□ -0.24
COL12A1-208ENST00000486533 MAST1Q9Y2H9 1570 aa13.53□□□□□ -0.24
COL12A1-208ENST00000486533 KDM5DQ9BY66 1539 aa13.53□□□□□ -0.24
COL12A1-208ENST00000486533 WASHC2CQ9Y4E1 1318 aa13.52□□□□□ -0.24
COL12A1-208ENST00000486533 CAMSAP1Q5T5Y3 1602 aa13.52□□□□□ -0.24
COL12A1-208ENST00000486533 NCOA1Q15788 1441 aa13.52□□□□□ -0.25
COL12A1-208ENST00000486533 ZNF142P52746 1687 aaPredicted RBP13.51□□□□□ -0.25
COL12A1-208ENST00000486533 CEP170BQ9Y4F5 1589 aaPredicted RBP13.51□□□□□ -0.25
COL12A1-208ENST00000486533 PTPN23Q9H3S7 1636 aa13.51□□□□□ -0.25
COL12A1-208ENST00000486533 FAM135AQ9P2D6 1515 aa13.51□□□□□ -0.25
COL12A1-208ENST00000486533 CERKQ8TCT0 537 aa13.5□□□□□ -0.25
COL12A1-208ENST00000486533 PTPRTO14522 1441 aa13.49□□□□□ -0.25
COL12A1-208ENST00000486533 CROCC2H7BZ55 1655 aa13.49□□□□□ -0.25
COL12A1-208ENST00000486533 ZBTB12Q9Y330 459 aaPredicted RBP13.49□□□□□ -0.25
COL12A1-208ENST00000486533 EIF2AK4Q9P2K8 1649 aaKnown RBP13.48□□□□□ -0.25
COL12A1-208ENST00000486533 PZPP20742 1482 aa13.48□□□□□ -0.25
COL12A1-208ENST00000486533 FGD6Q6ZV73 1430 aa13.48□□□□□ -0.25
COL12A1-208ENST00000486533 RNF17Q9BXT8 1623 aaKnown RBP13.48□□□□□ -0.25
COL12A1-208ENST00000486533 FBXO31Q5XUX0 539 aaPredicted RBP13.47□□□□□ -0.25
COL12A1-208ENST00000486533 SHANK2Q9UPX8 1470 aa13.47□□□□□ -0.25
COL12A1-208ENST00000486533 TNRQ92752 1358 aa13.47□□□□□ -0.25
COL12A1-208ENST00000486533 ABCC5O15440 1437 aa13.46□□□□□ -0.25
COL12A1-208ENST00000486533 POTEHQ6S545 545 aa13.46□□□□□ -0.25
COL12A1-208ENST00000486533 DUOX2Q9NRD8 1548 aa13.46□□□□□ -0.25
COL12A1-208ENST00000486533 ZC3H13Q5T200 1668 aaKnown RBP13.46□□□□□ -0.26
COL12A1-208ENST00000486533 DAPK1P53355 1430 aa13.46□□□□□ -0.26
COL12A1-208ENST00000486533 A2ML1A8K2U0 1454 aa13.46□□□□□ -0.26
COL12A1-208ENST00000486533 NCKAP5LQ9HCH0 1330 aa13.45□□□□□ -0.26
COL12A1-208ENST00000486533 DNMT1P26358 1616 aaKnown RBP13.45□□□□□ -0.26
COL12A1-208ENST00000486533 KIF15Q9NS87 1388 aa13.45□□□□□ -0.26
COL12A1-208ENST00000486533 PLA2R1Q13018 1463 aa13.45□□□□□ -0.26
COL12A1-208ENST00000486533 RRP7BPQ9NSQ0 103 aa13.45□□□□□ -0.26
COL12A1-208ENST00000486533 TCOF1Q13428 1488 aaKnown RBP13.44□□□□□ -0.26
COL12A1-208ENST00000486533 ABCC3O15438 1527 aa13.44□□□□□ -0.26
COL12A1-208ENST00000486533 MROH1Q8NDA8 1641 aa13.43□□□□□ -0.26
COL12A1-208ENST00000486533 PKD2Q13563 968 aa13.43□□□□□ -0.26
COL12A1-208ENST00000486533 CEP152O94986 1710 aa13.43□□□□□ -0.26
COL12A1-208ENST00000486533 ERBINQ96RT1 1412 aa13.42□□□□□ -0.26
COL12A1-208ENST00000486533 CHIC2Q9UKJ5 165 aa13.41□□□□□ -0.26
COL12A1-208ENST00000486533 FAM50AQ14320 339 aaKnown RBP13.41□□□□□ -0.26
COL12A1-208ENST00000486533 NLRP1Q9C000 1473 aa13.4□□□□□ -0.26
COL12A1-208ENST00000486533 ANKRD30AQ9BXX3 1397 aa13.4□□□□□ -0.26
COL12A1-208ENST00000486533 CCER1Q8TC90 406 aaPredicted RBP13.4□□□□□ -0.26
COL12A1-208ENST00000486533 POLR1AO95602 1720 aaPredicted RBP13.4□□□□□ -0.26
COL12A1-208ENST00000486533 LTBP4Q8N2S1 1624 aa13.4□□□□□ -0.27
COL12A1-208ENST00000486533 PRDM15P57071 1507 aaPredicted RBP13.39□□□□□ -0.27
COL12A1-208ENST00000486533 CFAP65Q6ZU64 1925 aaKnown RBP13.39□□□□□ -0.27
COL12A1-208ENST00000486533 UGGT1Q9NYU2 1555 aa13.39□□□□□ -0.27
COL12A1-208ENST00000486533 ZNF335Q9H4Z2 1342 aaPredicted RBP13.38□□□□□ -0.27
COL12A1-208ENST00000486533 SPATA31D1Q6ZQQ2 1576 aa13.38□□□□□ -0.27
COL12A1-208ENST00000486533 ERVK-7P63135 1459 aa13.38□□□□□ -0.27
COL12A1-208ENST00000486533 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.38□□□□□ -0.27
COL12A1-208ENST00000486533 DEPDC5O75140 1603 aa13.37□□□□□ -0.27
COL12A1-208ENST00000486533 THEMISQ8N1K5 641 aaPredicted RBP13.37□□□□□ -0.27
COL12A1-208ENST00000486533 KANK1Q14678 1352 aa13.36□□□□□ -0.27
COL12A1-208ENST00000486533 ANKLE2Q86XL3 938 aa13.35□□□□□ -0.27
COL12A1-208ENST00000486533 NEURL4Q96JN8 1562 aa13.35□□□□□ -0.27
COL12A1-208ENST00000486533 ADGRL2O95490 1459 aa13.34□□□□□ -0.27
COL12A1-208ENST00000486533 IQSEC2Q5JU85 1478 aa13.34□□□□□ -0.27
COL12A1-208ENST00000486533 ARHGAP31Q2M1Z3 1444 aa13.33□□□□□ -0.28
COL12A1-208ENST00000486533 UBR1Q8IWV7 1749 aa13.31□□□□□ -0.28
COL12A1-208ENST00000486533 NPHP4O75161 1426 aaPredicted RBP13.31□□□□□ -0.28
COL12A1-208ENST00000486533 ANKRD50Q9ULJ7 1429 aa13.3□□□□□ -0.28
COL12A1-208ENST00000486533 LMTK2Q8IWU2 1503 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 127.9 ms