RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 FGD6Q6ZV73 1430 aa12.2□□□□□ -0.46
USP40-216ENST00000485943 ADGBQ8N7X0 1667 aa12.2□□□□□ -0.46
USP40-216ENST00000485943 ABCA6Q8N139 1617 aa12.2□□□□□ -0.46
USP40-216ENST00000485943 GGT6Q6P531 493 aa12.2□□□□□ -0.46
USP40-216ENST00000485943 BCORL1Q5H9F3 1711 aa12.2□□□□□ -0.46
USP40-216ENST00000485943 DIP2CQ9Y2E4 1556 aa12.19□□□□□ -0.46
USP40-216ENST00000485943 KDM4FA0A1W2PPD8 638 aa12.19□□□□□ -0.46
USP40-216ENST00000485943 FER1L4A9Z1Z3 1794 aa12.19□□□□□ -0.46
USP40-216ENST00000485943 KIDINS220Q9ULH0 1771 aa12.19□□□□□ -0.46
USP40-216ENST00000485943 ARHGEF5Q12774 1597 aa12.18□□□□□ -0.46
USP40-216ENST00000485943 CHIC2Q9UKJ5 165 aa12.18□□□□□ -0.46
USP40-216ENST00000485943 A2MP01023 1474 aa12.18□□□□□ -0.46
USP40-216ENST00000485943 RIMS1Q86UR5 1692 aaKnown RBP12.18□□□□□ -0.46
USP40-216ENST00000485943 RTEL1-TNFRSF6BF6WH68 1400 aa12.17□□□□□ -0.46
USP40-216ENST00000485943 MADDQ8WXG6 1647 aa12.16□□□□□ -0.46
USP40-216ENST00000485943 KIF3BO15066 747 aa12.16□□□□□ -0.46
USP40-216ENST00000485943 DSG3P32926 999 aa12.16□□□□□ -0.46
USP40-216ENST00000485943 ZBTB12Q9Y330 459 aaPredicted RBP12.16□□□□□ -0.46
USP40-216ENST00000485943 INO80Q9ULG1 1556 aaPredicted RBP12.16□□□□□ -0.46
USP40-216ENST00000485943 ANKRD30AQ9BXX3 1397 aa12.16□□□□□ -0.46
USP40-216ENST00000485943 RRP7BPQ9NSQ0 103 aa12.15□□□□□ -0.46
USP40-216ENST00000485943 MBD5Q9P267 1494 aa12.14□□□□□ -0.47
USP40-216ENST00000485943 REREQ9P2R6 1566 aa12.13□□□□□ -0.47
USP40-216ENST00000485943 DAPK1P53355 1430 aa12.13□□□□□ -0.47
USP40-216ENST00000485943 CROCC2H7BZ55 1655 aa12.13□□□□□ -0.47
USP40-216ENST00000485943 ADAMTSL3P82987 1691 aa12.13□□□□□ -0.47
USP40-216ENST00000485943 DNMT1P26358 1616 aaKnown RBP12.12□□□□□ -0.47
USP40-216ENST00000485943 FBXO3Q9UK99 471 aa12.12□□□□□ -0.47
USP40-216ENST00000485943 DHX29Q7Z478 1369 aaKnown RBP12.12□□□□□ -0.47
USP40-216ENST00000485943 WASHC2CQ9Y4E1 1318 aa12.11□□□□□ -0.47
USP40-216ENST00000485943 CNTLNQ9NXG0 1405 aa12.11□□□□□ -0.47
USP40-216ENST00000485943 PTPRMP28827 1452 aa12.11□□□□□ -0.47
USP40-216ENST00000485943 TCOF1Q13428 1488 aaKnown RBP12.11□□□□□ -0.47
USP40-216ENST00000485943 KANK1Q14678 1352 aa12.11□□□□□ -0.47
USP40-216ENST00000485943 KIF15Q9NS87 1388 aa12.11□□□□□ -0.47
USP40-216ENST00000485943 AGLP35573 1532 aa12.11□□□□□ -0.47
USP40-216ENST00000485943 SHANK2Q9UPX8 1470 aa12.1□□□□□ -0.47
USP40-216ENST00000485943 MAST1Q9Y2H9 1570 aa12.09□□□□□ -0.47
USP40-216ENST00000485943 DUOX2Q9NRD8 1548 aa12.09□□□□□ -0.47
USP40-216ENST00000485943 ABCC5O15440 1437 aa12.09□□□□□ -0.47
USP40-216ENST00000485943 PLXNC1O60486 1568 aa12.09□□□□□ -0.47
USP40-216ENST00000485943 CLTCQ00610 1675 aaKnown RBP12.06□□□□□ -0.48
USP40-216ENST00000485943 SIGLEC1Q9BZZ2 1709 aa12.06□□□□□ -0.48
USP40-216ENST00000485943 CEBPAP49715 358 aaPredicted RBP12.06□□□□□ -0.48
USP40-216ENST00000485943 EIF2AK4Q9P2K8 1649 aaKnown RBP12.04□□□□□ -0.48
USP40-216ENST00000485943 UHRF1BP1Q6BDS2 1440 aa12.04□□□□□ -0.48
USP40-216ENST00000485943 ERBINQ96RT1 1412 aa12.04□□□□□ -0.48
USP40-216ENST00000485943 KDM5DQ9BY66 1539 aa12.03□□□□□ -0.48
USP40-216ENST00000485943 SETD1BQ9UPS6 1966 aaKnown RBP12.03□□□□□ -0.48
USP40-216ENST00000485943 MROH2AA6NES4 1674 aa12.03□□□□□ -0.48
USP40-216ENST00000485943 C3P01024 1663 aa12.02□□□□□ -0.49
USP40-216ENST00000485943 ZMYM3Q14202 1370 aa12.02□□□□□ -0.49
USP40-216ENST00000485943 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.02□□□□□ -0.49
USP40-216ENST00000485943 VASPP50552 380 aaPredicted RBP12.01□□□□□ -0.49
USP40-216ENST00000485943 STAG3Q9UJ98 1225 aa12.01□□□□□ -0.49
USP40-216ENST00000485943 ANKRD50Q9ULJ7 1429 aa12.01□□□□□ -0.49
USP40-216ENST00000485943 ZC3H13Q5T200 1668 aaKnown RBP12□□□□□ -0.49
USP40-216ENST00000485943 PREX1Q8TCU6 1659 aa12□□□□□ -0.49
USP40-216ENST00000485943 CFAP65Q6ZU64 1925 aaKnown RBP12□□□□□ -0.49
USP40-216ENST00000485943 TRIM52Q96A61 297 aa12□□□□□ -0.49
USP40-216ENST00000485943 NCOA1Q15788 1441 aa12□□□□□ -0.49
USP40-216ENST00000485943 FAM135AQ9P2D6 1515 aa12□□□□□ -0.49
USP40-216ENST00000485943 RRBP1Q9P2E9 1410 aaKnown RBP11.99□□□□□ -0.49
USP40-216ENST00000485943 ADGRL2O95490 1459 aa11.99□□□□□ -0.49
USP40-216ENST00000485943 CEP152O94986 1710 aa11.98□□□□□ -0.49
USP40-216ENST00000485943 ROCK1Q13464 1354 aa11.98□□□□□ -0.49
USP40-216ENST00000485943 RNF17Q9BXT8 1623 aaKnown RBP11.97□□□□□ -0.49
USP40-216ENST00000485943 NPATQ14207 1427 aa11.95□□□□□ -0.5
USP40-216ENST00000485943 HSPA2P54652 639 aa11.95□□□□□ -0.5
USP40-216ENST00000485943 TNRQ92752 1358 aa11.94□□□□□ -0.5
USP40-216ENST00000485943 CAMSAP1Q5T5Y3 1602 aa11.94□□□□□ -0.5
USP40-216ENST00000485943 NUP155O75694 1391 aa11.93□□□□□ -0.5
USP40-216ENST00000485943 PZPP20742 1482 aa11.93□□□□□ -0.5
USP40-216ENST00000485943 ABCC3O15438 1527 aa11.92□□□□□ -0.5
USP40-216ENST00000485943 PRDM15P57071 1507 aaPredicted RBP11.92□□□□□ -0.5
USP40-216ENST00000485943 CHGAP10645 457 aaKnown RBP11.92□□□□□ -0.5
USP40-216ENST00000485943 SSUH2Q9Y2M2 353 aa11.92□□□□□ -0.5
USP40-216ENST00000485943 ACIN1Q9UKV3 1341 aaKnown RBP11.91□□□□□ -0.5
USP40-216ENST00000485943 FBXO31Q5XUX0 539 aaPredicted RBP11.91□□□□□ -0.5
USP40-216ENST00000485943 IFNLR1Q8IU57 520 aaPredicted RBP11.91□□□□□ -0.5
USP40-216ENST00000485943 LMTK3Q96Q04 1460 aa11.9□□□□□ -0.5
USP40-216ENST00000485943 MYO3AQ8NEV4 1616 aa11.9□□□□□ -0.5
USP40-216ENST00000485943 SPDYE2BA6NHP3 402 aa11.9□□□□□ -0.5
USP40-216ENST00000485943 SLC24A1O60721 1099 aa11.9□□□□□ -0.5
USP40-216ENST00000485943 SPDYE6P0CI01 402 aa11.9□□□□□ -0.5
USP40-216ENST00000485943 PTPRKQ15262 1439 aa11.9□□□□□ -0.5
USP40-216ENST00000485943 SPDYE2Q495Y8 402 aa11.9□□□□□ -0.5
USP40-216ENST00000485943 BCANQ96GW7 911 aa11.9□□□□□ -0.5
USP40-216ENST00000485943 ZNF692Q9BU19 519 aaPredicted RBP11.9□□□□□ -0.5
USP40-216ENST00000485943 GCC2Q8IWJ2 1684 aa11.9□□□□□ -0.5
USP40-216ENST00000485943 DEPDC5O75140 1603 aa11.89□□□□□ -0.51
USP40-216ENST00000485943 THEMISQ8N1K5 641 aaPredicted RBP11.89□□□□□ -0.51
USP40-216ENST00000485943 CEP170BQ9Y4F5 1589 aaPredicted RBP11.88□□□□□ -0.51
USP40-216ENST00000485943 EID1Q9Y6B2 187 aa11.87□□□□□ -0.51
USP40-216ENST00000485943 NLRP1Q9C000 1473 aa11.87□□□□□ -0.51
USP40-216ENST00000485943 UNC13BO14795 1591 aa11.87□□□□□ -0.51
USP40-216ENST00000485943 UGGT1Q9NYU2 1555 aa11.87□□□□□ -0.51
USP40-216ENST00000485943 TET3O43151 1660 aa11.87□□□□□ -0.51
USP40-216ENST00000485943 HFM1A2PYH4 1435 aa11.86□□□□□ -0.51
USP40-216ENST00000485943 MROH1Q8NDA8 1641 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms