RNA–Protein interactions for RNA: ENST00000485627.1

CTSA-208, Transcript of cathepsin A, human

TSL 3

Gene CTSA, Length 695 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTSA-208	ENST00000485627	AFAP1	Q8N556	730 aa		13.88	□□□□□ -0.19
CTSA-208	ENST00000485627	SOCS7	O14512	581 aa		13.87	□□□□□ -0.19
CTSA-208	ENST00000485627	NEO1	Q92859	1461 aa		13.87	□□□□□ -0.19
CTSA-208	ENST00000485627	MPHOSPH9	Q99550	1183 aa		13.86	□□□□□ -0.19
CTSA-208	ENST00000485627	RTEL1-TNFRSF6B	F6WH68	1400 aa		13.86	□□□□□ -0.19
CTSA-208	ENST00000485627	PLXNC1	O60486	1568 aa		13.84	□□□□□ -0.19
CTSA-208	ENST00000485627	NEUROD1	Q13562	356 aa		13.84	□□□□□ -0.19
CTSA-208	ENST00000485627	MLEC	Q14165	292 aa		13.84	□□□□□ -0.19
CTSA-208	ENST00000485627	ZNF518A	Q6AHZ1	1483 aa		13.83	□□□□□ -0.2
CTSA-208	ENST00000485627	SIGLEC1	Q9BZZ2	1709 aa		13.83	□□□□□ -0.2
CTSA-208	ENST00000485627	DUOX2	Q9NRD8	1548 aa		13.83	□□□□□ -0.2
CTSA-208	ENST00000485627	NUP155	O75694	1391 aa		13.82	□□□□□ -0.2
CTSA-208	ENST00000485627	DENND4B	O75064	1496 aa	Predicted RBP	13.81	□□□□□ -0.2
CTSA-208	ENST00000485627	ARHGEF40	Q8TER5	1519 aa		13.81	□□□□□ -0.2
CTSA-208	ENST00000485627	POGZ	Q7Z3K3	1410 aa		13.81	□□□□□ -0.2
CTSA-208	ENST00000485627	ERBIN	Q96RT1	1412 aa		13.81	□□□□□ -0.2
CTSA-208	ENST00000485627	SIN3A	Q96ST3	1273 aa		13.8	□□□□□ -0.2
CTSA-208	ENST00000485627	YEATS2	Q9ULM3	1422 aa		13.8	□□□□□ -0.2
CTSA-208	ENST00000485627	ATP7A	Q04656	1500 aa		13.8	□□□□□ -0.2
CTSA-208	ENST00000485627	ZFYVE16	Q7Z3T8	1539 aa		13.8	□□□□□ -0.2
CTSA-208	ENST00000485627	TIMELESS	Q9UNS1	1208 aa		13.79	□□□□□ -0.2
CTSA-208	ENST00000485627	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.78	□□□□□ -0.2	6e-8	■□□□□ 8.6
CTSA-208	ENST00000485627	CEBPA	P49715	358 aa	Predicted RBP	13.77	□□□□□ -0.21
CTSA-208	ENST00000485627	SCAF1	Q9H7N4	1312 aa	Known RBP	13.77	□□□□□ -0.21
CTSA-208	ENST00000485627	RICTOR	Q6R327	1708 aa		13.76	□□□□□ -0.21
CTSA-208	ENST00000485627	INO80	Q9ULG1	1556 aa	Predicted RBP	13.76	□□□□□ -0.21
CTSA-208	ENST00000485627	PZP	P20742	1482 aa		13.76	□□□□□ -0.21
CTSA-208	ENST00000485627	PKD2	Q13563	968 aa		13.76	□□□□□ -0.21
CTSA-208	ENST00000485627	CNKSR2	Q8WXI2	1034 aa		13.76	□□□□□ -0.21
CTSA-208	ENST00000485627	DHX29	Q7Z478	1369 aa	Known RBP	13.75	□□□□□ -0.21
CTSA-208	ENST00000485627	TONSL	Q96HA7	1378 aa		13.75	□□□□□ -0.21
CTSA-208	ENST00000485627	KDM5D	Q9BY66	1539 aa		13.74	□□□□□ -0.21
CTSA-208	ENST00000485627	MLH3	Q9UHC1	1453 aa		13.74	□□□□□ -0.21
CTSA-208	ENST00000485627	KDM5C	P41229	1560 aa		13.74	□□□□□ -0.21
CTSA-208	ENST00000485627	SPATA31D1	Q6ZQQ2	1576 aa		13.73	□□□□□ -0.21
CTSA-208	ENST00000485627	KANK1	Q14678	1352 aa		13.72	□□□□□ -0.21
CTSA-208	ENST00000485627	KIF3B	O15066	747 aa		13.72	□□□□□ -0.21
CTSA-208	ENST00000485627	ANKRD30B	Q9BXX2	1392 aa		13.71	□□□□□ -0.21
CTSA-208	ENST00000485627	UNC13B	O14795	1591 aa		13.71	□□□□□ -0.21
CTSA-208	ENST00000485627	FAM135A	Q9P2D6	1515 aa		13.71	□□□□□ -0.21
CTSA-208	ENST00000485627	A2M	P01023	1474 aa		13.71	□□□□□ -0.21
CTSA-208	ENST00000485627	KIDINS220	Q9ULH0	1771 aa		13.71	□□□□□ -0.22
CTSA-208	ENST00000485627	FER1L4	A9Z1Z3	1794 aa		13.7	□□□□□ -0.22
CTSA-208	ENST00000485627	MSH5	O43196	834 aa		13.69	□□□□□ -0.22
CTSA-208	ENST00000485627	STRC	Q7RTU9	1775 aa		13.68	□□□□□ -0.22
CTSA-208	ENST00000485627	ZMYM4	Q5VZL5	1548 aa		13.68	□□□□□ -0.22
CTSA-208	ENST00000485627	EIF2AK4	Q9P2K8	1649 aa	Known RBP	13.68	□□□□□ -0.22
CTSA-208	ENST00000485627	MAGI2	Q86UL8	1455 aa		13.67	□□□□□ -0.22
CTSA-208	ENST00000485627	IQGAP3	Q86VI3	1631 aa		13.66	□□□□□ -0.22
CTSA-208	ENST00000485627	PPP1R15A	O75807	674 aa	Predicted RBP	13.66	□□□□□ -0.22
CTSA-208	ENST00000485627	PREX1	Q8TCU6	1659 aa		13.64	□□□□□ -0.23
CTSA-208	ENST00000485627	RPRD2	Q5VT52	1461 aa	Known RBP	13.64	□□□□□ -0.23
CTSA-208	ENST00000485627	ABCA6	Q8N139	1617 aa		13.64	□□□□□ -0.23
CTSA-208	ENST00000485627	ZNF316	A6NFI3	1004 aa	Predicted RBP	13.63	□□□□□ -0.23
CTSA-208	ENST00000485627	GGT6	Q6P531	493 aa		13.63	□□□□□ -0.23
CTSA-208	ENST00000485627	DIP2C	Q9Y2E4	1556 aa		13.62	□□□□□ -0.23
CTSA-208	ENST00000485627	DEPDC5	O75140	1603 aa		13.62	□□□□□ -0.23
CTSA-208	ENST00000485627	L3MBTL2	Q969R5	705 aa		13.61	□□□□□ -0.23
CTSA-208	ENST00000485627	CCDC144A	A2RUR9	1427 aa		13.61	□□□□□ -0.23
CTSA-208	ENST00000485627	ATP10A	O60312	1499 aa		13.61	□□□□□ -0.23
CTSA-208	ENST00000485627	PRDM15	P57071	1507 aa	Predicted RBP	13.6	□□□□□ -0.23
CTSA-208	ENST00000485627	UHRF1BP1	Q6BDS2	1440 aa		13.6	□□□□□ -0.23
CTSA-208	ENST00000485627	DMRT2	Q9Y5R5	561 aa		13.6	□□□□□ -0.23
CTSA-208	ENST00000485627	LTBP4	Q8N2S1	1624 aa		13.59	□□□□□ -0.23
CTSA-208	ENST00000485627	WASHC2C	Q9Y4E1	1318 aa		13.59	□□□□□ -0.23
CTSA-208	ENST00000485627	RNF17	Q9BXT8	1623 aa	Known RBP	13.58	□□□□□ -0.24
CTSA-208	ENST00000485627	VWDE	Q8N2E2	1590 aa		13.58	□□□□□ -0.24
CTSA-208	ENST00000485627	TET3	O43151	1660 aa		13.56	□□□□□ -0.24
CTSA-208	ENST00000485627	PTPRT	O14522	1441 aa		13.56	□□□□□ -0.24
CTSA-208	ENST00000485627	LMTK2	Q8IWU2	1503 aa		13.55	□□□□□ -0.24
CTSA-208	ENST00000485627	MROH1	Q8NDA8	1641 aa		13.55	□□□□□ -0.24
CTSA-208	ENST00000485627	ZBTB22	O15209	634 aa		13.55	□□□□□ -0.24
CTSA-208	ENST00000485627	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.55	□□□□□ -0.24
CTSA-208	ENST00000485627	PLA2R1	Q13018	1463 aa		13.53	□□□□□ -0.24
CTSA-208	ENST00000485627	RERE	Q9P2R6	1566 aa		13.53	□□□□□ -0.24
CTSA-208	ENST00000485627		E9PCH4	1651 aa		13.53	□□□□□ -0.24
CTSA-208	ENST00000485627	RGL3	Q3MIN7	710 aa		13.52	□□□□□ -0.25
CTSA-208	ENST00000485627	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	13.52	□□□□□ -0.25
CTSA-208	ENST00000485627	EFCAB6	Q5THR3	1501 aa		13.52	□□□□□ -0.25
CTSA-208	ENST00000485627	C3	P01024	1663 aa		13.51	□□□□□ -0.25
CTSA-208	ENST00000485627	AGL	P35573	1532 aa		13.51	□□□□□ -0.25
CTSA-208	ENST00000485627	UBAP1L	F5GYI3	381 aa		13.51	□□□□□ -0.25
CTSA-208	ENST00000485627	ESF1	Q9H501	851 aa	Known RBP	13.51	□□□□□ -0.25
CTSA-208	ENST00000485627	ABCC3	O15438	1527 aa		13.5	□□□□□ -0.25
CTSA-208	ENST00000485627	TRPM2	O94759	1503 aa		13.5	□□□□□ -0.25
CTSA-208	ENST00000485627	NCKAP5L	Q9HCH0	1330 aa		13.5	□□□□□ -0.25
CTSA-208	ENST00000485627	ZNF326	Q5BKZ1	582 aa	Known RBP	13.5	□□□□□ -0.25
CTSA-208	ENST00000485627	DCAF11	Q8TEB1	546 aa		13.5	□□□□□ -0.25
CTSA-208	ENST00000485627	KDM2A	Q9Y2K7	1162 aa		13.5	□□□□□ -0.25
CTSA-208	ENST00000485627	CEP152	O94986	1710 aa		13.5	□□□□□ -0.25
CTSA-208	ENST00000485627	SPHKAP	Q2M3C7	1700 aa		13.48	□□□□□ -0.25
CTSA-208	ENST00000485627	NPAT	Q14207	1427 aa		13.47	□□□□□ -0.25
CTSA-208	ENST00000485627	ZC3H13	Q5T200	1668 aa	Known RBP	13.47	□□□□□ -0.25
CTSA-208	ENST00000485627	SETD1B	Q9UPS6	1966 aa	Known RBP	13.47	□□□□□ -0.25
CTSA-208	ENST00000485627	NBPF8	Q3BBV2	869 aa		13.47	□□□□□ -0.25
CTSA-208	ENST00000485627	ARHGAP31	Q2M1Z3	1444 aa		13.47	□□□□□ -0.25
CTSA-208	ENST00000485627	CNTLN	Q9NXG0	1405 aa		13.47	□□□□□ -0.25
CTSA-208	ENST00000485627	DIEXF	Q68CQ4	756 aa	Known RBP	13.46	□□□□□ -0.25
CTSA-208	ENST00000485627	STAC3	Q96MF2	364 aa		13.46	□□□□□ -0.25
CTSA-208	ENST00000485627	IQSEC2	Q5JU85	1478 aa		13.45	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms