RNA–Protein interactions for RNA: ENST00000484203.5

PTCD3-215, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 928 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-215ENST00000484203 POTEB2H3BUK9 544 aa9.97□□□□□ -0.81
PTCD3-215ENST00000484203 RAPGEF6Q8TEU7 1601 aa9.96□□□□□ -0.82
PTCD3-215ENST00000484203 MAMSTRQ6ZN01 415 aa9.95□□□□□ -0.82
PTCD3-215ENST00000484203 HS6ST3Q8IZP7 471 aa9.95□□□□□ -0.82
PTCD3-215ENST00000484203 OTUD5Q96G74 571 aa9.95□□□□□ -0.82
PTCD3-215ENST00000484203 CABP2Q9NPB3 220 aa9.95□□□□□ -0.82
PTCD3-215ENST00000484203 NEO1Q92859 1461 aa9.95□□□□□ -0.82
PTCD3-215ENST00000484203 COL17A1Q9UMD9 1497 aaPredicted RBP9.95□□□□□ -0.82
PTCD3-215ENST00000484203 ARAP3Q8WWN8 1544 aa9.95□□□□□ -0.82
PTCD3-215ENST00000484203 KDM4FA0A1W2PPD8 638 aa9.94□□□□□ -0.82
PTCD3-215ENST00000484203 GOLGA2Q08379 1002 aa9.94□□□□□ -0.82
PTCD3-215ENST00000484203 ATP1B4Q9UN42 357 aaPredicted RBP9.94□□□□□ -0.82
PTCD3-215ENST00000484203 TRIM35Q9UPQ4 493 aa9.93□□□□□ -0.82
PTCD3-215ENST00000484203 CFAP43Q8NDM7 1665 aa9.93□□□□□ -0.82
PTCD3-215ENST00000484203 IER5LQ5T953 404 aa9.92□□□□□ -0.82
PTCD3-215ENST00000484203 ARHGAP35Q9NRY4 1499 aa9.91□□□□□ -0.82
PTCD3-215ENST00000484203 SEC24BO95487 1268 aa9.91□□□□□ -0.82
PTCD3-215ENST00000484203 TSPOAP1O95153 1857 aa9.91□□□□□ -0.82
PTCD3-215ENST00000484203 PPRC1Q5VV67 1664 aaKnown RBP9.9□□□□□ -0.82
PTCD3-215ENST00000484203 CLIP1P30622 1438 aa9.9□□□□□ -0.83
PTCD3-215ENST00000484203 ABCA9Q8IUA7 1624 aa9.89□□□□□ -0.83
PTCD3-215ENST00000484203 MKRN3Q13064 507 aaKnown RBP9.89□□□□□ -0.83
PTCD3-215ENST00000484203 EFCAB2Q5VUJ9 269 aa9.89□□□□□ -0.83
PTCD3-215ENST00000484203 RAPGEF3O95398 923 aa9.88□□□□□ -0.83
PTCD3-215ENST00000484203 EFCAB3Q8N7B9 438 aa9.88□□□□□ -0.83
PTCD3-215ENST00000484203 SCUBE2Q9NQ36 999 aa9.88□□□□□ -0.83
PTCD3-215ENST00000484203 FANCAO15360 1455 aa9.87□□□□□ -0.83
PTCD3-215ENST00000484203 DENND4BO75064 1496 aaPredicted RBP9.87□□□□□ -0.83
PTCD3-215ENST00000484203 PLCH2O75038 1416 aa9.87□□□□□ -0.83
PTCD3-215ENST00000484203 AKNAQ7Z591 1439 aa9.87□□□□□ -0.83
PTCD3-215ENST00000484203 CASKIN1Q8WXD9 1431 aa9.87□□□□□ -0.83
PTCD3-215ENST00000484203 ADGRL1O94910 1474 aa9.86□□□□□ -0.83
PTCD3-215ENST00000484203 CCDC18Q5T9S5 1454 aa9.86□□□□□ -0.83
PTCD3-215ENST00000484203 HECW1Q76N89 1606 aa9.86□□□□□ -0.83
PTCD3-215ENST00000484203 TROQ12816 1431 aaPredicted RBP9.86□□□□□ -0.83
PTCD3-215ENST00000484203 BBXQ8WY36 941 aaPredicted RBP9.86□□□□□ -0.83
PTCD3-215ENST00000484203 POTEFA5A3E0 1075 aa9.84□□□□□ -0.83
PTCD3-215ENST00000484203 POTEJP0CG39 1038 aa9.84□□□□□ -0.83
PTCD3-215ENST00000484203 MAGI2Q86UL8 1455 aa9.84□□□□□ -0.83
PTCD3-215ENST00000484203 ARID4BQ4LE39 1312 aaPredicted RBP9.83□□□□□ -0.84
PTCD3-215ENST00000484203 CDK13Q14004 1512 aaKnown RBP9.83□□□□□ -0.84
PTCD3-215ENST00000484203 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.83□□□□□ -0.84
PTCD3-215ENST00000484203 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.83□□□□□ -0.84
PTCD3-215ENST00000484203 POGZQ7Z3K3 1410 aa9.82□□□□□ -0.84
PTCD3-215ENST00000484203 SOX12O15370 315 aa9.82□□□□□ -0.84
PTCD3-215ENST00000484203 COLQQ9Y215 455 aaPredicted RBP9.82□□□□□ -0.84
PTCD3-215ENST00000484203 FYCO1Q9BQS8 1478 aa9.82□□□□□ -0.84
PTCD3-215ENST00000484203 SCAPERQ9BY12 1400 aa9.82□□□□□ -0.84
PTCD3-215ENST00000484203 CFAP74Q9C0B2 1584 aa9.81□□□□□ -0.84
PTCD3-215ENST00000484203 PLCG2P16885 1265 aa9.81□□□□□ -0.84
PTCD3-215ENST00000484203 NKX1-1Q15270 411 aaPredicted RBP9.81□□□□□ -0.84
PTCD3-215ENST00000484203 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.8□□□□□ -0.843e-8■■□□□ 13.5
PTCD3-215ENST00000484203 PHF8Q9UPP1 1060 aa9.8□□□□□ -0.84
PTCD3-215ENST00000484203 NLRP6P59044 892 aa9.78□□□□□ -0.84
PTCD3-215ENST00000484203 MFRPQ9BY79 579 aa9.78□□□□□ -0.84
PTCD3-215ENST00000484203 ZNF518AQ6AHZ1 1483 aa9.78□□□□□ -0.84
PTCD3-215ENST00000484203 KIF14Q15058 1648 aa9.78□□□□□ -0.84
PTCD3-215ENST00000484203 IRX5P78411 483 aaPredicted RBP9.77□□□□□ -0.85
PTCD3-215ENST00000484203 MTUS2Q5JR59 1369 aa9.76□□□□□ -0.85
PTCD3-215ENST00000484203 TTC37Q6PGP7 1564 aa9.76□□□□□ -0.85
PTCD3-215ENST00000484203 CFAP44Q96MT7 982 aa9.76□□□□□ -0.85
PTCD3-215ENST00000484203 OCEL1Q9H607 264 aa9.76□□□□□ -0.85
PTCD3-215ENST00000484203 MYT1LQ9UL68 1186 aa9.76□□□□□ -0.85
PTCD3-215ENST00000484203 ARHGAP5Q13017 1502 aa9.76□□□□□ -0.85
PTCD3-215ENST00000484203 ZMYM4Q5VZL5 1548 aa9.76□□□□□ -0.85
PTCD3-215ENST00000484203 CEP162Q5TB80 1403 aa9.75□□□□□ -0.85
PTCD3-215ENST00000484203 PAXIP1Q6ZW49 1069 aaPredicted RBP9.75□□□□□ -0.85
PTCD3-215ENST00000484203 AFAP1Q8N556 730 aa9.75□□□□□ -0.85
PTCD3-215ENST00000484203 RYDENQ9NUL5 291 aaKnown RBP9.75□□□□□ -0.85
PTCD3-215ENST00000484203 CFDP1Q9UEE9 299 aaPredicted RBP9.75□□□□□ -0.85
PTCD3-215ENST00000484203 CCNB3Q8WWL7 1395 aa9.75□□□□□ -0.85
PTCD3-215ENST00000484203 ATP10AO60312 1499 aa9.74□□□□□ -0.85
PTCD3-215ENST00000484203 ZFYVE16Q7Z3T8 1539 aa9.74□□□□□ -0.85
PTCD3-215ENST00000484203 SPRYD3Q8NCJ5 442 aa9.74□□□□□ -0.85
PTCD3-215ENST00000484203 FBXO22Q8NEZ5 403 aa9.74□□□□□ -0.85
PTCD3-215ENST00000484203 PLEKHH2Q8IVE3 1493 aa9.73□□□□□ -0.85
PTCD3-215ENST00000484203 ARHGEF40Q8TER5 1519 aa9.73□□□□□ -0.85
PTCD3-215ENST00000484203 GTPBP6O43824 516 aaPredicted RBP9.73□□□□□ -0.85
PTCD3-215ENST00000484203 C9orf84Q5VXU9 1444 aa9.73□□□□□ -0.85
PTCD3-215ENST00000484203 KIAA1107Q9UPP5 1409 aa9.73□□□□□ -0.85
PTCD3-215ENST00000484203 PTPRMP28827 1452 aa9.72□□□□□ -0.85
PTCD3-215ENST00000484203 PCF11O94913 1555 aaKnown RBP9.72□□□□□ -0.85
PTCD3-215ENST00000484203 FRMPD1Q5SYB0 1578 aa9.72□□□□□ -0.85
PTCD3-215ENST00000484203 RSPH4AQ5TD94 716 aa9.72□□□□□ -0.85
PTCD3-215ENST00000484203 ILDR1Q86SU0 546 aaPredicted RBP9.72□□□□□ -0.85
PTCD3-215ENST00000484203 ESF1Q9H501 851 aaKnown RBP9.72□□□□□ -0.85
PTCD3-215ENST00000484203 ZNF777Q9ULD5 760 aaPredicted RBP9.72□□□□□ -0.85
PTCD3-215ENST00000484203 YEATS2Q9ULM3 1422 aa9.72□□□□□ -0.85
PTCD3-215ENST00000484203 MLH3Q9UHC1 1453 aa9.72□□□□□ -0.85
PTCD3-215ENST00000484203 PDCD7Q8N8D1 485 aaKnown RBP9.71□□□□□ -0.86
PTCD3-215ENST00000484203 MS4A4AQ96JQ5 239 aa9.71□□□□□ -0.86
PTCD3-215ENST00000484203 DPY19L2Q6NUT2 758 aa9.7□□□□□ -0.86
PTCD3-215ENST00000484203 SPAG9O60271 1321 aaKnown RBP9.7□□□□□ -0.86
PTCD3-215ENST00000484203 GPATCH8Q9UKJ3 1502 aaKnown RBP9.7□□□□□ -0.86
PTCD3-215ENST00000484203 MLECQ14165 292 aa9.68□□□□□ -0.86
PTCD3-215ENST00000484203 RICTORQ6R327 1708 aa9.68□□□□□ -0.86
PTCD3-215ENST00000484203 MYO5CQ9NQX4 1742 aa9.68□□□□□ -0.86
PTCD3-215ENST00000484203 KDM5CP41229 1560 aa9.67□□□□□ -0.86
PTCD3-215ENST00000484203 VPS8Q8N3P4 1428 aa9.67□□□□□ -0.86
PTCD3-215ENST00000484203 TRAPPC8Q9Y2L5 1435 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms