RNA–Protein interactions for RNA: ENST00000483941.1

SMAD9-204, Transcript of SMAD family member 9, humanhuman

TSL 3

Gene SMAD9, Length 545 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-204ENST00000483941 ROCK1Q13464 1354 aa20.82■□□□□ 0.92
SMAD9-204ENST00000483941 ABCC5O15440 1437 aa20.81■□□□□ 0.92
SMAD9-204ENST00000483941 HRCP23327 699 aa20.81■□□□□ 0.92
SMAD9-204ENST00000483941 DNMT1P26358 1616 aaKnown RBP20.81■□□□□ 0.92
SMAD9-204ENST00000483941 ARHGEF5Q12774 1597 aa20.8■□□□□ 0.92
SMAD9-204ENST00000483941 HNRNPMP52272 730 aaKnown RBP eCLIP20.79■□□□□ 0.922e-6■■■■□ 21.3
SMAD9-204ENST00000483941 CCDC141Q6ZP82 1450 aa20.79■□□□□ 0.92
SMAD9-204ENST00000483941 SHANK2Q9UPX8 1470 aa20.79■□□□□ 0.92
SMAD9-204ENST00000483941 SYCP2Q9BX26 1530 aa20.78■□□□□ 0.92
SMAD9-204ENST00000483941 CEP170BQ9Y4F5 1589 aaPredicted RBP20.78■□□□□ 0.92
SMAD9-204ENST00000483941 MBD5Q9P267 1494 aa20.78■□□□□ 0.92
SMAD9-204ENST00000483941 PLA2R1Q13018 1463 aa20.77■□□□□ 0.92
SMAD9-204ENST00000483941 SETD5Q9C0A6 1442 aa20.77■□□□□ 0.91
SMAD9-204ENST00000483941 PLXNC1O60486 1568 aa20.76■□□□□ 0.91
SMAD9-204ENST00000483941 ANKRD30AQ9BXX3 1397 aa20.76■□□□□ 0.91
SMAD9-204ENST00000483941 ZNF335Q9H4Z2 1342 aaPredicted RBP20.76■□□□□ 0.91
SMAD9-204ENST00000483941 ZMYM3Q14202 1370 aa20.75■□□□□ 0.91
SMAD9-204ENST00000483941 ATP7AQ04656 1500 aa20.75■□□□□ 0.91
SMAD9-204ENST00000483941 HFM1A2PYH4 1435 aa20.75■□□□□ 0.91
SMAD9-204ENST00000483941 PTPRKQ15262 1439 aa20.75■□□□□ 0.91
SMAD9-204ENST00000483941 INO80Q9ULG1 1556 aaPredicted RBP20.75■□□□□ 0.91
SMAD9-204ENST00000483941 UBAP1LF5GYI3 381 aa20.74■□□□□ 0.91
SMAD9-204ENST00000483941 CHIC2Q9UKJ5 165 aa20.74■□□□□ 0.91
SMAD9-204ENST00000483941 NCKAP5LQ9HCH0 1330 aa20.74■□□□□ 0.91
SMAD9-204ENST00000483941 ADGRL2O95490 1459 aa20.71■□□□□ 0.91
SMAD9-204ENST00000483941 SPAG9O60271 1321 aaKnown RBP20.7■□□□□ 0.9
SMAD9-204ENST00000483941 PKD2Q13563 968 aa20.69■□□□□ 0.9
SMAD9-204ENST00000483941 POLR1AO95602 1720 aaPredicted RBP20.68■□□□□ 0.9
SMAD9-204ENST00000483941 RRP7BPQ9NSQ0 103 aa20.68■□□□□ 0.9
SMAD9-204ENST00000483941 RTEL1-TNFRSF6BF6WH68 1400 aa20.68■□□□□ 0.9
SMAD9-204ENST00000483941 NAIPQ13075 1403 aa20.68■□□□□ 0.9
SMAD9-204ENST00000483941 A2MP01023 1474 aa20.68■□□□□ 0.9
SMAD9-204ENST00000483941 CROCC2H7BZ55 1655 aa20.67■□□□□ 0.9
SMAD9-204ENST00000483941 ADGBQ8N7X0 1667 aa20.67■□□□□ 0.9
SMAD9-204ENST00000483941 RAB3GAP2Q9H2M9 1393 aa20.67■□□□□ 0.9
SMAD9-204ENST00000483941 MED1Q15648 1581 aaPredicted RBP20.67■□□□□ 0.9
SMAD9-204ENST00000483941 MAST1Q9Y2H9 1570 aa20.67■□□□□ 0.9
SMAD9-204ENST00000483941 PPP6R1Q9UPN7 881 aa20.62■□□□□ 0.89
SMAD9-204ENST00000483941 A2ML1A8K2U0 1454 aa20.62■□□□□ 0.89
SMAD9-204ENST00000483941 CCER1Q8TC90 406 aaPredicted RBP20.61■□□□□ 0.89
SMAD9-204ENST00000483941 KIF15Q9NS87 1388 aa20.6■□□□□ 0.89
SMAD9-204ENST00000483941 NEURL4Q96JN8 1562 aa20.59■□□□□ 0.89
SMAD9-204ENST00000483941 CPS1P31327 1500 aa20.59■□□□□ 0.89
SMAD9-204ENST00000483941 GCC2Q8IWJ2 1684 aa20.59■□□□□ 0.89
SMAD9-204ENST00000483941 GGT6Q6P531 493 aa20.58■□□□□ 0.89
SMAD9-204ENST00000483941 ANKRD50Q9ULJ7 1429 aa20.58■□□□□ 0.88
SMAD9-204ENST00000483941 SCAF1Q9H7N4 1312 aaKnown RBP20.56■□□□□ 0.88
SMAD9-204ENST00000483941 CLSPNQ9HAW4 1339 aa20.55■□□□□ 0.88
SMAD9-204ENST00000483941 DUOX2Q9NRD8 1548 aa20.55■□□□□ 0.88
SMAD9-204ENST00000483941 HSPA1LP34931 641 aa20.55■□□□□ 0.88
SMAD9-204ENST00000483941 ZEB1P37275 1124 aaPredicted RBP20.54■□□□□ 0.88
SMAD9-204ENST00000483941 PIP4K2BP78356 416 aa20.53■□□□□ 0.88
SMAD9-204ENST00000483941 ERBINQ96RT1 1412 aa20.53■□□□□ 0.88
SMAD9-204ENST00000483941 TRIM52Q96A61 297 aa20.52■□□□□ 0.88
SMAD9-204ENST00000483941 FAM135AQ9P2D6 1515 aa20.51■□□□□ 0.87
SMAD9-204ENST00000483941 KDM5DQ9BY66 1539 aa20.5■□□□□ 0.87
SMAD9-204ENST00000483941 TOM1O60784 492 aa20.5■□□□□ 0.87
SMAD9-204ENST00000483941 VWDEQ8N2E2 1590 aa20.5■□□□□ 0.87
SMAD9-204ENST00000483941 TNRQ92752 1358 aa20.49■□□□□ 0.87
SMAD9-204ENST00000483941 PZPP20742 1482 aa20.49■□□□□ 0.87
SMAD9-204ENST00000483941 DHX57Q6P158 1386 aaKnown RBP20.48■□□□□ 0.87
SMAD9-204ENST00000483941 DHX29Q7Z478 1369 aaKnown RBP20.48■□□□□ 0.87
SMAD9-204ENST00000483941 DEPDC5O75140 1603 aa20.46■□□□□ 0.87
SMAD9-204ENST00000483941 ALKQ9UM73 1620 aa20.46■□□□□ 0.87
SMAD9-204ENST00000483941 IQGAP1P46940 1657 aa20.45■□□□□ 0.86
SMAD9-204ENST00000483941 PHF23Q9BUL5 403 aaPredicted RBP20.43■□□□□ 0.86
SMAD9-204ENST00000483941 UGGT1Q9NYU2 1555 aa20.42■□□□□ 0.86
SMAD9-204ENST00000483941 NLRP1Q9C000 1473 aa20.42■□□□□ 0.86
SMAD9-204ENST00000483941 SYNMO15061 1565 aa20.42■□□□□ 0.86
SMAD9-204ENST00000483941 RNF17Q9BXT8 1623 aaKnown RBP20.42■□□□□ 0.86
SMAD9-204ENST00000483941 MPHOSPH9Q99550 1183 aa20.41■□□□□ 0.86
SMAD9-204ENST00000483941 NUP155O75694 1391 aa20.41■□□□□ 0.86
SMAD9-204ENST00000483941 MED14O60244 1454 aa20.41■□□□□ 0.86
SMAD9-204ENST00000483941 STRCP1A6NGW2 1772 aa20.4■□□□□ 0.86
SMAD9-204ENST00000483941 NPHP4O75161 1426 aaPredicted RBP20.4■□□□□ 0.86
SMAD9-204ENST00000483941 FBXO31Q5XUX0 539 aaPredicted RBP20.4■□□□□ 0.86
SMAD9-204ENST00000483941 SLC4A1APQ9BWU0 796 aaKnown RBP20.4■□□□□ 0.86
SMAD9-204ENST00000483941 ANKLE2Q86XL3 938 aa20.39■□□□□ 0.85
SMAD9-204ENST00000483941 KANK1Q14678 1352 aa20.38■□□□□ 0.85
SMAD9-204ENST00000483941 EIF2AK4Q9P2K8 1649 aaKnown RBP20.38■□□□□ 0.85
SMAD9-204ENST00000483941 KIF3BO15066 747 aa20.37■□□□□ 0.85
SMAD9-204ENST00000483941 ZC3H13Q5T200 1668 aaKnown RBP20.35■□□□□ 0.85
SMAD9-204ENST00000483941 THEMISQ8N1K5 641 aaPredicted RBP20.35■□□□□ 0.85
SMAD9-204ENST00000483941 WASHC2CQ9Y4E1 1318 aa20.34■□□□□ 0.85
SMAD9-204ENST00000483941 LRRC7Q96NW7 1537 aa20.33■□□□□ 0.85
SMAD9-204ENST00000483941 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.33■□□□□ 0.85
SMAD9-204ENST00000483941 UNC13BO14795 1591 aa20.33■□□□□ 0.84
SMAD9-204ENST00000483941 TIMELESSQ9UNS1 1208 aa20.29■□□□□ 0.84
SMAD9-204ENST00000483941 ABCC3O15438 1527 aa20.28■□□□□ 0.84
SMAD9-204ENST00000483941 SENP3Q9H4L4 574 aaPredicted RBP20.28■□□□□ 0.84
SMAD9-204ENST00000483941 UBR1Q8IWV7 1749 aa20.27■□□□□ 0.84
SMAD9-204ENST00000483941 ERVK-7P63135 1459 aa20.25■□□□□ 0.83
SMAD9-204ENST00000483941 CEP152O94986 1710 aa20.25■□□□□ 0.83
SMAD9-204ENST00000483941 IQGAP3Q86VI3 1631 aa20.25■□□□□ 0.83
SMAD9-204ENST00000483941 XIRP1Q702N8 1843 aaKnown RBP20.25■□□□□ 0.83
SMAD9-204ENST00000483941 PRDM15P57071 1507 aaPredicted RBP20.24■□□□□ 0.83
SMAD9-204ENST00000483941 MROH1Q8NDA8 1641 aa20.22■□□□□ 0.83
SMAD9-204ENST00000483941 SCAF11Q99590 1463 aaKnown RBP20.22■□□□□ 0.83
SMAD9-204ENST00000483941 CFAP65Q6ZU64 1925 aaKnown RBP20.21■□□□□ 0.83
SMAD9-204ENST00000483941 ANKRD30BQ9BXX2 1392 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 833.5 ms