RNA–Protein interactions for RNA: ENST00000483690.1

MCF2-207, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

TSL 3

Gene MCF2, Length 752 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-207ENST00000483690 IL27Q8NEV9 243 aa15.44■□□□□ 0.06
MCF2-207ENST00000483690 TSR1Q2NL82 804 aaKnown RBP15.43■□□□□ 0.06
MCF2-207ENST00000483690 NPDC1Q9NQX5 325 aaPredicted RBP15.43■□□□□ 0.06
MCF2-207ENST00000483690 HOXB3P14651 431 aaPredicted RBP15.41■□□□□ 0.06
MCF2-207ENST00000483690 FOSBP53539 338 aa15.41■□□□□ 0.06
MCF2-207ENST00000483690 ARSIQ5FYB1 569 aa15.41■□□□□ 0.06
MCF2-207ENST00000483690 ZSWIM6Q9HCJ5 1215 aa15.41■□□□□ 0.06
MCF2-207ENST00000483690 NUDT7P0C024 238 aa15.4■□□□□ 0.06
MCF2-207ENST00000483690 ZNF454Q8N9F8 522 aa15.39■□□□□ 0.05
MCF2-207ENST00000483690 OTUD5Q96G74 571 aa15.39■□□□□ 0.05
MCF2-207ENST00000483690 PARP9Q8IXQ6 854 aa15.38■□□□□ 0.05
MCF2-207ENST00000483690 ZNF710Q8N1W2 664 aa15.38■□□□□ 0.05
MCF2-207ENST00000483690 KHSRPQ92945 711 aaKnown RBP eCLIP15.38■□□□□ 0.05
MCF2-207ENST00000483690 TTLL12Q14166 644 aaPredicted RBP15.37■□□□□ 0.05
MCF2-207ENST00000483690 ZDHHC16Q969W1 377 aa15.37■□□□□ 0.05
MCF2-207ENST00000483690 CERKQ8TCT0 537 aa15.35■□□□□ 0.05
MCF2-207ENST00000483690 C6orf132Q5T0Z8 1188 aa15.34■□□□□ 0.05
MCF2-207ENST00000483690 GPR153Q6NV75 609 aa15.34■□□□□ 0.05
MCF2-207ENST00000483690 FAM117AQ9C073 453 aa15.34■□□□□ 0.05
MCF2-207ENST00000483690 C14orf37Q86TY3 774 aa15.32■□□□□ 0.04
MCF2-207ENST00000483690 DDRGK1Q96HY6 314 aa15.32■□□□□ 0.04
MCF2-207ENST00000483690 ADAM33Q9BZ11 813 aa15.29■□□□□ 0.04
MCF2-207ENST00000483690 GIGYF2Q6Y7W6 1299 aaKnown RBP15.27■□□□□ 0.04
MCF2-207ENST00000483690 LHX6Q9UPM6 363 aa15.26■□□□□ 0.03
MCF2-207ENST00000483690 PSDA5PKW4 1024 aaPredicted RBP15.25■□□□□ 0.03
MCF2-207ENST00000483690 SNPHO15079 494 aa15.25■□□□□ 0.03
MCF2-207ENST00000483690 CLCN1P35523 988 aa15.25■□□□□ 0.03
MCF2-207ENST00000483690 PPP4R3BQ5MIZ7 849 aa15.25■□□□□ 0.03
MCF2-207ENST00000483690 PADI6Q6TGC4 694 aa15.25■□□□□ 0.03
MCF2-207ENST00000483690 RBM27Q9P2N5 1060 aaKnown RBP15.24■□□□□ 0.03
MCF2-207ENST00000483690 PLEKHG3A1L390 1219 aa15.23■□□□□ 0.03
MCF2-207ENST00000483690 OATP04181 439 aa15.23■□□□□ 0.03
MCF2-207ENST00000483690 MDM2Q00987 491 aaPredicted RBP15.21■□□□□ 0.03
MCF2-207ENST00000483690 FAM161AQ3B820 660 aa15.21■□□□□ 0.03
MCF2-207ENST00000483690 PHOX2BQ99453 314 aa15.21■□□□□ 0.03
MCF2-207ENST00000483690 GPCPD1Q9NPB8 672 aa15.21■□□□□ 0.03
MCF2-207ENST00000483690 METTL3Q86U44 580 aaKnown RBP15.2■□□□□ 0.02
MCF2-207ENST00000483690 REPIN1Q9BWE0 567 aaKnown RBP15.2■□□□□ 0.02
MCF2-207ENST00000483690 MS4A1P11836 297 aa15.19■□□□□ 0.02
MCF2-207ENST00000483690 PRSS12P56730 875 aa15.19■□□□□ 0.02
MCF2-207ENST00000483690 ADGRG1Q9Y653 693 aa15.19■□□□□ 0.02
MCF2-207ENST00000483690 TTC13Q8NBP0 860 aa15.18■□□□□ 0.02
MCF2-207ENST00000483690 TMUB1Q9BVT8 246 aa15.18■□□□□ 0.02
MCF2-207ENST00000483690 CDCA7LQ96GN5 454 aa15.17■□□□□ 0.02
MCF2-207ENST00000483690 PXYLP1Q8TE99 480 aa15.16■□□□□ 0.02
MCF2-207ENST00000483690 BCL2L12Q9HB09 334 aa15.16■□□□□ 0.02
MCF2-207ENST00000483690 HOXB1P14653 301 aaPredicted RBP15.15■□□□□ 0.02
MCF2-207ENST00000483690 PTPREP23469 700 aa15.13■□□□□ 0.01
MCF2-207ENST00000483690 RBM46Q8TBY0 533 aaKnown RBP15.13■□□□□ 0.01
MCF2-207ENST00000483690 COL9A1P20849 921 aa15.12■□□□□ 0.01
MCF2-207ENST00000483690 SSTR3P32745 418 aaPredicted RBP15.12■□□□□ 0.01
MCF2-207ENST00000483690 GOPCQ9HD26 462 aa15.12■□□□□ 0.01
MCF2-207ENST00000483690 PPP1R3GB7ZBB8 358 aa15.11■□□□□ 0.01
MCF2-207ENST00000483690 NLRP7Q8WX94 980 aa15.1■□□□□ 0.01
MCF2-207ENST00000483690 FAM217BQ9NTX9 383 aaPredicted RBP15.08■□□□□ 0
MCF2-207ENST00000483690 PCMTD1Q96MG8 357 aaPredicted RBP15.05■□□□□ -0
MCF2-207ENST00000483690 BEGAINQ9BUH8 593 aa15.05■□□□□ -0
MCF2-207ENST00000483690 FAM198AQ9UFP1 575 aa15.05■□□□□ -0
MCF2-207ENST00000483690 TSKSQ9UJT2 592 aa15.04■□□□□ -0
MCF2-207ENST00000483690 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.03■□□□□ -0
MCF2-207ENST00000483690 KCNH8Q96L42 1107 aa15.03■□□□□ -0
MCF2-207ENST00000483690 RSPH6AQ9H0K4 717 aa15.03■□□□□ -0
MCF2-207ENST00000483690 SH3D19Q5HYK7 790 aa15.02■□□□□ -0
MCF2-207ENST00000483690 NBPF26B4DH59 902 aa15.01□□□□□ -0.01
MCF2-207ENST00000483690 EYA1Q99502 592 aa15.01□□□□□ -0.01
MCF2-207ENST00000483690 RCCD1A6NED2 376 aa15□□□□□ -0.01
MCF2-207ENST00000483690 TRIM6-TRIM34B2RNG4 842 aa15□□□□□ -0.01
MCF2-207ENST00000483690 PACS2Q86VP3 889 aa15□□□□□ -0.01
MCF2-207ENST00000483690 KCNK17Q96T54 332 aa15□□□□□ -0.01
MCF2-207ENST00000483690 NUDT18Q6ZVK8 323 aa14.99□□□□□ -0.01
MCF2-207ENST00000483690 PNMA3Q9UL41 463 aa14.97□□□□□ -0.01
MCF2-207ENST00000483690 SKIV2LQ15477 1246 aaKnown RBP14.96□□□□□ -0.01
MCF2-207ENST00000483690 TATDN2Q93075 761 aa14.96□□□□□ -0.01
MCF2-207ENST00000483690 DNAJB2P25686 324 aa14.94□□□□□ -0.02
MCF2-207ENST00000483690 ONECUT3O60422 494 aaPredicted RBP14.93□□□□□ -0.02
MCF2-207ENST00000483690 PROX2Q3B8N5 592 aa14.93□□□□□ -0.02
MCF2-207ENST00000483690 ATP1B4Q9UN42 357 aaPredicted RBP14.93□□□□□ -0.02
MCF2-207ENST00000483690 ERBB3P21860 1342 aa14.92□□□□□ -0.02
MCF2-207ENST00000483690 C3orf80F5H4A9 247 aa14.92□□□□□ -0.02
MCF2-207ENST00000483690 SULF1Q8IWU6 871 aa14.92□□□□□ -0.02
MCF2-207ENST00000483690 DIXDC1Q155Q3 683 aa14.91□□□□□ -0.02
MCF2-207ENST00000483690 FAM163AQ96GL9 167 aaPredicted RBP14.91□□□□□ -0.02
MCF2-207ENST00000483690 FLIIQ13045 1269 aa14.9□□□□□ -0.02
MCF2-207ENST00000483690 VARS2Q5ST30 1063 aaKnown RBP14.89□□□□□ -0.03
MCF2-207ENST00000483690 MYSM1Q5VVJ2 828 aa14.89□□□□□ -0.03
MCF2-207ENST00000483690 TMEM134Q9H6X4 195 aa14.89□□□□□ -0.03
MCF2-207ENST00000483690 POLR3EQ9NVU0 708 aa14.89□□□□□ -0.03
MCF2-207ENST00000483690 ZBED2Q9BTP6 218 aa14.88□□□□□ -0.03
MCF2-207ENST00000483690 TBC1D2Q9BYX2 928 aa14.88□□□□□ -0.03
MCF2-207ENST00000483690 SMAPO00193 183 aa14.87□□□□□ -0.03
MCF2-207ENST00000483690 PSEN2P49810 448 aa14.87□□□□□ -0.03
MCF2-207ENST00000483690 ZMYND15Q9H091 742 aa14.87□□□□□ -0.03
MCF2-207ENST00000483690 KIAA1468Q9P260 1216 aa14.87□□□□□ -0.03
MCF2-207ENST00000483690 DDX11L8A8MPP1 907 aa14.86□□□□□ -0.03
MCF2-207ENST00000483690 ARHGAP33O14559 1287 aa14.86□□□□□ -0.03
MCF2-207ENST00000483690 CD46P15529 392 aa14.86□□□□□ -0.03
MCF2-207ENST00000483690 SUPT5HO00267 1087 aaKnown RBP14.84□□□□□ -0.03
MCF2-207ENST00000483690 CLK2P49760 499 aaKnown RBP14.84□□□□□ -0.03
MCF2-207ENST00000483690 PROCA1Q8NCQ7 364 aaPredicted RBP14.84□□□□□ -0.03
MCF2-207ENST00000483690 LCE2DQ5TA82 110 aaPredicted RBP14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms