RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 POTEGQ6S5H5 508 aa14.25□□□□□ -0.13
USP40-213ENST00000483216 PBX2P40425 430 aa14.24□□□□□ -0.13
USP40-213ENST00000483216 TSR1Q2NL82 804 aaKnown RBP14.24□□□□□ -0.13
USP40-213ENST00000483216 NUTM2FA1L443 756 aa14.22□□□□□ -0.13
USP40-213ENST00000483216 POTEEQ6S8J3 1075 aa14.22□□□□□ -0.13
USP40-213ENST00000483216 ARHGAP33O14559 1287 aa14.21□□□□□ -0.13
USP40-213ENST00000483216 GPIHBP1Q8IV16 184 aa14.21□□□□□ -0.13
USP40-213ENST00000483216 KCNH8Q96L42 1107 aa14.21□□□□□ -0.13
USP40-213ENST00000483216 CDHR5Q9HBB8 845 aa14.2□□□□□ -0.14
USP40-213ENST00000483216 CERKQ8TCT0 537 aa14.19□□□□□ -0.14
USP40-213ENST00000483216 KCNK17Q96T54 332 aa14.19□□□□□ -0.14
USP40-213ENST00000483216 PPP1R3GB7ZBB8 358 aa14.18□□□□□ -0.14
USP40-213ENST00000483216 NPDC1Q9NQX5 325 aaPredicted RBP14.18□□□□□ -0.14
USP40-213ENST00000483216 PTGDRQ13258 359 aa14.17□□□□□ -0.14
USP40-213ENST00000483216 FCHSD2O94868 740 aa14.16□□□□□ -0.14
USP40-213ENST00000483216 COL9A1P20849 921 aa14.16□□□□□ -0.14
USP40-213ENST00000483216 PSEN2P49810 448 aa14.16□□□□□ -0.14
USP40-213ENST00000483216 AXIN2Q9Y2T1 843 aa14.16□□□□□ -0.14
USP40-213ENST00000483216 GPR37O15354 613 aa14.15□□□□□ -0.14
USP40-213ENST00000483216 HIC1Q14526 733 aa14.12□□□□□ -0.15
USP40-213ENST00000483216 ZC3H15Q8WU90 426 aaKnown RBP14.12□□□□□ -0.15
USP40-213ENST00000483216 CDAN1Q8IWY9 1227 aa14.11□□□□□ -0.15
USP40-213ENST00000483216 SLC4A5Q9BY07 1137 aa14.11□□□□□ -0.15
USP40-213ENST00000483216 DMRTA1Q5VZB9 504 aa14.1□□□□□ -0.15
USP40-213ENST00000483216 ZBED2Q9BTP6 218 aa14.1□□□□□ -0.15
USP40-213ENST00000483216 RBM27Q9P2N5 1060 aaKnown RBP14.09□□□□□ -0.15
USP40-213ENST00000483216 GNPATO15228 680 aa14.08□□□□□ -0.16
USP40-213ENST00000483216 PRSS12P56730 875 aa14.08□□□□□ -0.16
USP40-213ENST00000483216 LSM11P83369 360 aaKnown RBP eCLIP14.08□□□□□ -0.16
USP40-213ENST00000483216 KRTAP3-3Q9BYR6 98 aa14.08□□□□□ -0.16
USP40-213ENST00000483216 KRTAP3-2Q9BYR7 98 aa14.08□□□□□ -0.16
USP40-213ENST00000483216 ONECUT3O60422 494 aaPredicted RBP14.06□□□□□ -0.16
USP40-213ENST00000483216 ZMYND10O75800 440 aa14.06□□□□□ -0.16
USP40-213ENST00000483216 CDCA7LQ96GN5 454 aa14.06□□□□□ -0.16
USP40-213ENST00000483216 TK2O00142 265 aa14.05□□□□□ -0.16
USP40-213ENST00000483216 TTC13Q8NBP0 860 aa14.05□□□□□ -0.16
USP40-213ENST00000483216 PCDH10Q9P2E7 1040 aa14.05□□□□□ -0.16
USP40-213ENST00000483216 TRIM6-TRIM34B2RNG4 842 aa14.04□□□□□ -0.16
USP40-213ENST00000483216 PROX2Q3B8N5 592 aa14.03□□□□□ -0.16
USP40-213ENST00000483216 VPS9D1Q9Y2B5 631 aa14.03□□□□□ -0.16
USP40-213ENST00000483216 PADI6Q6TGC4 694 aa14.02□□□□□ -0.17
USP40-213ENST00000483216 BARGINQ6ZT62 677 aa14.02□□□□□ -0.17
USP40-213ENST00000483216 TSKSQ9UJT2 592 aa14.01□□□□□ -0.17
USP40-213ENST00000483216 FECHP22830 423 aa14□□□□□ -0.17
USP40-213ENST00000483216 TPRNQ4KMQ1 711 aa14□□□□□ -0.17
USP40-213ENST00000483216 ADGRD1Q6QNK2 874 aa13.99□□□□□ -0.17
USP40-213ENST00000483216 ANKRD13DQ6ZTN6 518 aa13.99□□□□□ -0.17
USP40-213ENST00000483216 FAM198AQ9UFP1 575 aa13.99□□□□□ -0.17
USP40-213ENST00000483216 PACS2Q86VP3 889 aa13.98□□□□□ -0.17
USP40-213ENST00000483216 RABGEF1Q9UJ41 708 aa13.98□□□□□ -0.17
USP40-213ENST00000483216 MAP2K5Q13163 448 aa13.97□□□□□ -0.17
USP40-213ENST00000483216 KIAA1468Q9P260 1216 aa13.96□□□□□ -0.17
USP40-213ENST00000483216 MINK1Q8N4C8 1332 aaPredicted RBP13.95□□□□□ -0.18
USP40-213ENST00000483216 HRO43593 1189 aa13.94□□□□□ -0.18
USP40-213ENST00000483216 BHMG1C9JSJ3 638 aaPredicted RBP13.93□□□□□ -0.18
USP40-213ENST00000483216 KRI1Q8N9T8 703 aaKnown RBP13.93□□□□□ -0.18
USP40-213ENST00000483216 NBPF26B4DH59 902 aa13.92□□□□□ -0.18
USP40-213ENST00000483216 IRF6O14896 467 aa13.92□□□□□ -0.18
USP40-213ENST00000483216 ADGRG1Q9Y653 693 aa13.92□□□□□ -0.18
USP40-213ENST00000483216 TATDN2Q93075 761 aa13.91□□□□□ -0.18
USP40-213ENST00000483216 NBPF3Q9H094 633 aa13.9□□□□□ -0.18
USP40-213ENST00000483216 OATP04181 439 aa13.89□□□□□ -0.19
USP40-213ENST00000483216 NUDT18Q6ZVK8 323 aa13.89□□□□□ -0.19
USP40-213ENST00000483216 PNMA3Q9UL41 463 aa13.89□□□□□ -0.19
USP40-213ENST00000483216 C3orf80F5H4A9 247 aa13.88□□□□□ -0.19
USP40-213ENST00000483216 RBM46Q8TBY0 533 aaKnown RBP13.87□□□□□ -0.19
USP40-213ENST00000483216 EYA1Q99502 592 aa13.87□□□□□ -0.19
USP40-213ENST00000483216 PRKCSHP14314 528 aaPredicted RBP13.86□□□□□ -0.19
USP40-213ENST00000483216 FAM161AQ3B820 660 aa13.86□□□□□ -0.19
USP40-213ENST00000483216 LAPTM4BQ86VI4 370 aa13.86□□□□□ -0.19
USP40-213ENST00000483216 CCDC102AQ96A19 550 aa13.86□□□□□ -0.19
USP40-213ENST00000483216 SLC24A3Q9HC58 644 aa13.86□□□□□ -0.19
USP40-213ENST00000483216 PXYLP1Q8TE99 480 aa13.85□□□□□ -0.19
USP40-213ENST00000483216 AK7Q96M32 723 aa13.85□□□□□ -0.19
USP40-213ENST00000483216 METTL3Q86U44 580 aaKnown RBP13.84□□□□□ -0.19
USP40-213ENST00000483216 MRPL50Q8N5N7 158 aaKnown RBP13.84□□□□□ -0.19
USP40-213ENST00000483216 STAC3Q96MF2 364 aa13.84□□□□□ -0.19
USP40-213ENST00000483216 SMAPO00193 183 aa13.83□□□□□ -0.2
USP40-213ENST00000483216 FAM98CQ17RN3 349 aaKnown RBP13.83□□□□□ -0.2
USP40-213ENST00000483216 SEPT9Q9UHD8 586 aaPredicted RBP13.83□□□□□ -0.2
USP40-213ENST00000483216 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.78□□□□□ -0.2
USP40-213ENST00000483216 PHOX2BQ99453 314 aa13.78□□□□□ -0.2
USP40-213ENST00000483216 RCCD1A6NED2 376 aa13.77□□□□□ -0.21
USP40-213ENST00000483216 DNAJB2P25686 324 aa13.77□□□□□ -0.21
USP40-213ENST00000483216 TRIM66O15016 1216 aa13.76□□□□□ -0.21
USP40-213ENST00000483216 ZFRQ96KR1 1074 aaKnown RBP13.76□□□□□ -0.21
USP40-213ENST00000483216 SPNS2Q8IVW8 549 aa13.75□□□□□ -0.21
USP40-213ENST00000483216 GOLGA8CPA6NN73 597 aa13.74□□□□□ -0.21
USP40-213ENST00000483216 AMHR2Q16671 573 aa13.74□□□□□ -0.21
USP40-213ENST00000483216 TMEM134Q9H6X4 195 aa13.73□□□□□ -0.21
USP40-213ENST00000483216 HDGFP51858 240 aaKnown RBP13.71□□□□□ -0.21
USP40-213ENST00000483216 MYT1LQ9UL68 1186 aa13.71□□□□□ -0.21
USP40-213ENST00000483216 ANKK1Q8NFD2 765 aa13.69□□□□□ -0.22
USP40-213ENST00000483216 WNT2BQ93097 391 aa13.69□□□□□ -0.22
USP40-213ENST00000483216 PDE4DQ08499 809 aa13.68□□□□□ -0.22
USP40-213ENST00000483216 SWT1Q5T5J6 900 aaKnown RBP13.68□□□□□ -0.22
USP40-213ENST00000483216 SAMD7Q7Z3H4 446 aa13.68□□□□□ -0.22
USP40-213ENST00000483216 NLRP7Q8WX94 980 aa13.68□□□□□ -0.22
USP40-213ENST00000483216 DAXXQ9UER7 740 aaPredicted RBP13.68□□□□□ -0.22
USP40-213ENST00000483216 CLCN1P35523 988 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms