RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 SETD1BQ9UPS6 1966 aaKnown RBP24.2■■□□□ 1.46
CCDC28B-205ENST00000483009 PREX1Q8TCU6 1659 aa24.19■■□□□ 1.46
CCDC28B-205ENST00000483009 PPARGC1BQ86YN6 1023 aaKnown RBP24.18■■□□□ 1.46
CCDC28B-205ENST00000483009 RRP7BPQ9NSQ0 103 aa24.18■■□□□ 1.46
CCDC28B-205ENST00000483009 ANKRD30AQ9BXX3 1397 aa24.17■■□□□ 1.46
CCDC28B-205ENST00000483009 WASHC2CQ9Y4E1 1318 aa24.17■■□□□ 1.46
CCDC28B-205ENST00000483009 KDM5DQ9BY66 1539 aa24.17■■□□□ 1.46
CCDC28B-205ENST00000483009 CHIC2Q9UKJ5 165 aa24.17■■□□□ 1.46
CCDC28B-205ENST00000483009 PTPRKQ15262 1439 aa24.17■■□□□ 1.46
CCDC28B-205ENST00000483009 EIF2AK4Q9P2K8 1649 aaKnown RBP24.15■■□□□ 1.46
CCDC28B-205ENST00000483009 ERBINQ96RT1 1412 aa24.15■■□□□ 1.46
CCDC28B-205ENST00000483009 RNF17Q9BXT8 1623 aaKnown RBP24.13■■□□□ 1.45
CCDC28B-205ENST00000483009 NCOA1Q15788 1441 aa24.13■■□□□ 1.45
CCDC28B-205ENST00000483009 ADGRL2O95490 1459 aa24.12■■□□□ 1.45
CCDC28B-205ENST00000483009 PZPP20742 1482 aa24.09■■□□□ 1.45
CCDC28B-205ENST00000483009 ABCC3O15438 1527 aa24.08■■□□□ 1.45
CCDC28B-205ENST00000483009 MROH1Q8NDA8 1641 aa24.07■■□□□ 1.44
CCDC28B-205ENST00000483009 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.05■■□□□ 1.44
CCDC28B-205ENST00000483009 FBXO31Q5XUX0 539 aaPredicted RBP24.05■■□□□ 1.44
CCDC28B-205ENST00000483009 TNRQ92752 1358 aa24.04■■□□□ 1.44
CCDC28B-205ENST00000483009 PRDM15P57071 1507 aaPredicted RBP24.03■■□□□ 1.44
CCDC28B-205ENST00000483009 ZC3H13Q5T200 1668 aaKnown RBP24.02■■□□□ 1.44
CCDC28B-205ENST00000483009 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.01■■□□□ 1.43
CCDC28B-205ENST00000483009 MYO3AQ8NEV4 1616 aa24.01■■□□□ 1.43
CCDC28B-205ENST00000483009 ANKRD50Q9ULJ7 1429 aa24.01■■□□□ 1.43
CCDC28B-205ENST00000483009 ROCK1Q13464 1354 aa24■■□□□ 1.43
CCDC28B-205ENST00000483009 KANK1Q14678 1352 aa24■■□□□ 1.43
CCDC28B-205ENST00000483009 CEP170BQ9Y4F5 1589 aaPredicted RBP23.99■■□□□ 1.43
CCDC28B-205ENST00000483009 DMRT2Q9Y5R5 561 aa23.98■■□□□ 1.43
CCDC28B-205ENST00000483009 RRBP1Q9P2E9 1410 aaKnown RBP23.98■■□□□ 1.43
CCDC28B-205ENST00000483009 A2ML1A8K2U0 1454 aa23.98■■□□□ 1.43
CCDC28B-205ENST00000483009 DEPDC5O75140 1603 aa23.97■■□□□ 1.43
CCDC28B-205ENST00000483009 ZNF142P52746 1687 aaPredicted RBP23.96■■□□□ 1.43
CCDC28B-205ENST00000483009 ITGAEP38570 1179 aa23.96■■□□□ 1.43
CCDC28B-205ENST00000483009 CAMSAP1Q5T5Y3 1602 aa23.95■■□□□ 1.42
CCDC28B-205ENST00000483009 ERVK-7P63135 1459 aa23.94■■□□□ 1.42
CCDC28B-205ENST00000483009 ARHGAP31Q2M1Z3 1444 aa23.94■■□□□ 1.42
CCDC28B-205ENST00000483009 SPATA31D1Q6ZQQ2 1576 aa23.93■■□□□ 1.42
CCDC28B-205ENST00000483009 STRCQ7RTU9 1775 aa23.93■■□□□ 1.42
CCDC28B-205ENST00000483009 PLA2R1Q13018 1463 aa23.93■■□□□ 1.42
CCDC28B-205ENST00000483009 NLRP1Q9C000 1473 aa23.93■■□□□ 1.42
CCDC28B-205ENST00000483009 CEP152O94986 1710 aa23.93■■□□□ 1.42
CCDC28B-205ENST00000483009 PTPRTO14522 1441 aa23.92■■□□□ 1.42
CCDC28B-205ENST00000483009 VWDEQ8N2E2 1590 aa23.91■■□□□ 1.42
CCDC28B-205ENST00000483009 LMTK2Q8IWU2 1503 aa23.91■■□□□ 1.42
CCDC28B-205ENST00000483009 PKD2Q13563 968 aa23.89■■□□□ 1.41
CCDC28B-205ENST00000483009 NCKAP5LQ9HCH0 1330 aa23.87■■□□□ 1.41
CCDC28B-205ENST00000483009 THEMISQ8N1K5 641 aaPredicted RBP23.84■■□□□ 1.41
CCDC28B-205ENST00000483009 UGGT1Q9NYU2 1555 aa23.83■■□□□ 1.41
CCDC28B-205ENST00000483009 EFCAB6Q5THR3 1501 aa23.81■■□□□ 1.4
CCDC28B-205ENST00000483009 UNC13BO14795 1591 aa23.8■■□□□ 1.4
CCDC28B-205ENST00000483009 ILDR1Q86SU0 546 aaPredicted RBP23.78■■□□□ 1.4
CCDC28B-205ENST00000483009 NOS1P29475 1434 aa23.77■■□□□ 1.4
CCDC28B-205ENST00000483009 ANKLE2Q86XL3 938 aa23.77■■□□□ 1.4
CCDC28B-205ENST00000483009 RPRD2Q5VT52 1461 aaKnown RBP23.76■■□□□ 1.39
CCDC28B-205ENST00000483009 CERKQ8TCT0 537 aa23.76■■□□□ 1.39
CCDC28B-205ENST00000483009 CFAP65Q6ZU64 1925 aaKnown RBP23.75■■□□□ 1.39
CCDC28B-205ENST00000483009 NUP155O75694 1391 aa23.75■■□□□ 1.39
CCDC28B-205ENST00000483009 TET3O43151 1660 aa23.73■■□□□ 1.39
CCDC28B-205ENST00000483009 NAIPQ13075 1403 aa23.73■■□□□ 1.39
CCDC28B-205ENST00000483009 FBXO41Q8TF61 875 aa23.72■■□□□ 1.39
CCDC28B-205ENST00000483009 IDI1Q13907 227 aa23.71■■□□□ 1.39
CCDC28B-205ENST00000483009 SYNMO15061 1565 aa23.7■■□□□ 1.38
CCDC28B-205ENST00000483009 NEURL4Q96JN8 1562 aa23.7■■□□□ 1.38
CCDC28B-205ENST00000483009 SLC52A1Q9NWF4 448 aa23.7■■□□□ 1.38
CCDC28B-205ENST00000483009 IQGAP3Q86VI3 1631 aa23.7■■□□□ 1.38
CCDC28B-205ENST00000483009 HFM1A2PYH4 1435 aa23.69■■□□□ 1.38
CCDC28B-205ENST00000483009 STAG3Q9UJ98 1225 aa23.69■■□□□ 1.38
CCDC28B-205ENST00000483009 MED14O60244 1454 aa23.68■■□□□ 1.38
CCDC28B-205ENST00000483009 NPHP4O75161 1426 aaPredicted RBP23.67■■□□□ 1.38
CCDC28B-205ENST00000483009 UBR1Q8IWV7 1749 aa23.67■■□□□ 1.38
CCDC28B-205ENST00000483009 LTBP4Q8N2S1 1624 aa23.67■■□□□ 1.38
CCDC28B-205ENST00000483009 ZNF335Q9H4Z2 1342 aaPredicted RBP23.67■■□□□ 1.38
CCDC28B-205ENST00000483009 ARHGAP23Q9P227 1491 aa23.67■■□□□ 1.38
CCDC28B-205ENST00000483009 POLR1AO95602 1720 aaPredicted RBP23.66■■□□□ 1.38
CCDC28B-205ENST00000483009 GCC2Q8IWJ2 1684 aa23.66■■□□□ 1.38
CCDC28B-205ENST00000483009 PIK3C2BO00750 1634 aa23.66■■□□□ 1.38
CCDC28B-205ENST00000483009 SLIT1O75093 1534 aa23.65■■□□□ 1.38
CCDC28B-205ENST00000483009 SCAF11Q99590 1463 aaKnown RBP23.64■■□□□ 1.38
CCDC28B-205ENST00000483009 TMEM2Q9UHN6 1383 aa23.64■■□□□ 1.37
CCDC28B-205ENST00000483009 TXNDC2Q86VQ3 553 aa23.63■■□□□ 1.37
CCDC28B-205ENST00000483009 LTKP29376 864 aa23.62■■□□□ 1.37
CCDC28B-205ENST00000483009 EID1Q9Y6B2 187 aa23.62■■□□□ 1.37
CCDC28B-205ENST00000483009 ADGRB3O60242 1522 aa23.61■■□□□ 1.37
CCDC28B-205ENST00000483009 E9PCH4 1651 aa23.6■■□□□ 1.37
CCDC28B-205ENST00000483009 KDM5AP29375 1690 aaKnown RBP23.59■■□□□ 1.37
CCDC28B-205ENST00000483009 IQSEC2Q5JU85 1478 aa23.56■■□□□ 1.36
CCDC28B-205ENST00000483009 TRIM52Q96A61 297 aa23.56■■□□□ 1.36
CCDC28B-205ENST00000483009 IQGAP1P46940 1657 aa23.56■■□□□ 1.36
CCDC28B-205ENST00000483009 CHGAP10645 457 aaKnown RBP23.52■■□□□ 1.36
CCDC28B-205ENST00000483009 CPS1P31327 1500 aa23.5■■□□□ 1.35
CCDC28B-205ENST00000483009 ZFYVE9O95405 1425 aa23.49■■□□□ 1.35
CCDC28B-205ENST00000483009 RIMS2Q9UQ26 1411 aa23.49■■□□□ 1.35
CCDC28B-205ENST00000483009 TMEM131LA2VDJ0 1609 aa23.48■■□□□ 1.35
CCDC28B-205ENST00000483009 HDGFP51858 240 aaKnown RBP23.48■■□□□ 1.35
CCDC28B-205ENST00000483009 SLC4A1APQ9BWU0 796 aaKnown RBP23.48■■□□□ 1.35
CCDC28B-205ENST00000483009 PPP1R15AO75807 674 aaPredicted RBP23.45■■□□□ 1.34
CCDC28B-205ENST00000483009 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.44■■□□□ 1.34
CCDC28B-205ENST00000483009 SPHKAPQ2M3C7 1700 aa23.44■■□□□ 1.34
CCDC28B-205ENST00000483009 SETD5Q9C0A6 1442 aa23.43■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms