RNA–Protein interactions for RNA: ENST00000482158.1

SF3B1-210, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 772 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-210ENST00000482158 MINK1Q8N4C8 1332 aaPredicted RBP12.49□□□□□ -0.41
SF3B1-210ENST00000482158 TRIM66O15016 1216 aa12.49□□□□□ -0.41
SF3B1-210ENST00000482158 IRF6O14896 467 aa12.48□□□□□ -0.41
SF3B1-210ENST00000482158 SNPHO15079 494 aa12.48□□□□□ -0.41
SF3B1-210ENST00000482158 ZDHHC16Q969W1 377 aa12.48□□□□□ -0.41
SF3B1-210ENST00000482158 HOXB1P14653 301 aaPredicted RBP12.47□□□□□ -0.41
SF3B1-210ENST00000482158 NEUROD2Q15784 382 aa12.47□□□□□ -0.41
SF3B1-210ENST00000482158 ADAM33Q9BZ11 813 aa12.47□□□□□ -0.41
SF3B1-210ENST00000482158 POTEMA6NI47 508 aa12.46□□□□□ -0.41
SF3B1-210ENST00000482158 CCDC102AQ96A19 550 aa12.46□□□□□ -0.41
SF3B1-210ENST00000482158 C6orf132Q5T0Z8 1188 aa12.45□□□□□ -0.42
SF3B1-210ENST00000482158 PDE4DQ08499 809 aa12.42□□□□□ -0.42
SF3B1-210ENST00000482158 GPBP1L1Q9HC44 474 aaPredicted RBP12.42□□□□□ -0.42
SF3B1-210ENST00000482158 TMEM132AQ24JP5 1023 aa12.4□□□□□ -0.42
SF3B1-210ENST00000482158 POTEGQ6S5H5 508 aa12.38□□□□□ -0.43
SF3B1-210ENST00000482158 PSDA5PKW4 1024 aaPredicted RBP12.37□□□□□ -0.43
SF3B1-210ENST00000482158 AMHR2Q16671 573 aa12.37□□□□□ -0.43
SF3B1-210ENST00000482158 PPP4R3BQ5MIZ7 849 aa12.37□□□□□ -0.43
SF3B1-210ENST00000482158 TTC13Q8NBP0 860 aa12.36□□□□□ -0.43
SF3B1-210ENST00000482158 CERKQ8TCT0 537 aa12.36□□□□□ -0.43
SF3B1-210ENST00000482158 BCL2L12Q9HB09 334 aa12.36□□□□□ -0.43
SF3B1-210ENST00000482158 COL9A1P20849 921 aa12.35□□□□□ -0.43
SF3B1-210ENST00000482158 KDM4CQ9H3R0 1056 aa12.35□□□□□ -0.43
SF3B1-210ENST00000482158 PADI6Q6TGC4 694 aa12.34□□□□□ -0.43
SF3B1-210ENST00000482158 PHOX2BQ99453 314 aa12.33□□□□□ -0.44
SF3B1-210ENST00000482158 FAM161AQ3B820 660 aa12.32□□□□□ -0.44
SF3B1-210ENST00000482158 ST18O60284 1047 aa12.31□□□□□ -0.44
SF3B1-210ENST00000482158 PRSS12P56730 875 aa12.31□□□□□ -0.44
SF3B1-210ENST00000482158 PARP9Q8IXQ6 854 aa12.31□□□□□ -0.44
SF3B1-210ENST00000482158 RBM27Q9P2N5 1060 aaKnown RBP12.31□□□□□ -0.44
SF3B1-210ENST00000482158 CDCA7LQ96GN5 454 aa12.3□□□□□ -0.44
SF3B1-210ENST00000482158 FAM198AQ9UFP1 575 aa12.3□□□□□ -0.44
SF3B1-210ENST00000482158 ADGRG1Q9Y653 693 aa12.29□□□□□ -0.44
SF3B1-210ENST00000482158 REPIN1Q9BWE0 567 aaKnown RBP12.28□□□□□ -0.44
SF3B1-210ENST00000482158 PCDH10Q9P2E7 1040 aa12.28□□□□□ -0.44
SF3B1-210ENST00000482158 PPP1R3GB7ZBB8 358 aa12.27□□□□□ -0.45
SF3B1-210ENST00000482158 PTPREP23469 700 aa12.27□□□□□ -0.45
SF3B1-210ENST00000482158 TMUB1Q9BVT8 246 aa12.27□□□□□ -0.45
SF3B1-210ENST00000482158 METTL3Q86U44 580 aaKnown RBP12.26□□□□□ -0.45
SF3B1-210ENST00000482158 PXYLP1Q8TE99 480 aa12.25□□□□□ -0.45
SF3B1-210ENST00000482158 TSKSQ9UJT2 592 aa12.25□□□□□ -0.45
SF3B1-210ENST00000482158 C3orf80F5H4A9 247 aa12.24□□□□□ -0.45
SF3B1-210ENST00000482158 POTEEQ6S8J3 1075 aa12.24□□□□□ -0.45
SF3B1-210ENST00000482158 IL27Q8NEV9 243 aa12.24□□□□□ -0.45
SF3B1-210ENST00000482158 FAM117AQ9C073 453 aa12.24□□□□□ -0.45
SF3B1-210ENST00000482158 ERBB3P21860 1342 aa12.23□□□□□ -0.45
SF3B1-210ENST00000482158 OATP04181 439 aa12.23□□□□□ -0.45
SF3B1-210ENST00000482158 TTLL12Q14166 644 aaPredicted RBP12.23□□□□□ -0.45
SF3B1-210ENST00000482158 VARS2Q5ST30 1063 aaKnown RBP12.23□□□□□ -0.45
SF3B1-210ENST00000482158 NLRP7Q8WX94 980 aa12.22□□□□□ -0.45
SF3B1-210ENST00000482158 MARVELD3Q96A59 401 aa12.22□□□□□ -0.45
SF3B1-210ENST00000482158 KCNK17Q96T54 332 aa12.22□□□□□ -0.45
SF3B1-210ENST00000482158 GIGYF2Q6Y7W6 1299 aaKnown RBP12.21□□□□□ -0.45
SF3B1-210ENST00000482158 PLEKHG3A1L390 1219 aa12.2□□□□□ -0.46
SF3B1-210ENST00000482158 MS4A1P11836 297 aa12.2□□□□□ -0.46
SF3B1-210ENST00000482158 MDM2Q00987 491 aaPredicted RBP12.2□□□□□ -0.46
SF3B1-210ENST00000482158 LCE2DQ5TA82 110 aaPredicted RBP12.2□□□□□ -0.46
SF3B1-210ENST00000482158 GTF3C3Q9Y5Q9 886 aa12.2□□□□□ -0.46
SF3B1-210ENST00000482158 TRIM6-TRIM34B2RNG4 842 aa12.19□□□□□ -0.46
SF3B1-210ENST00000482158 PSEN2P49810 448 aa12.19□□□□□ -0.46
SF3B1-210ENST00000482158 EMP3P54852 163 aa12.19□□□□□ -0.46
SF3B1-210ENST00000482158 PROX2Q3B8N5 592 aa12.19□□□□□ -0.46
SF3B1-210ENST00000482158 EYA1Q99502 592 aa12.19□□□□□ -0.46
SF3B1-210ENST00000482158 POTEB3A0JP26 581 aa12.18□□□□□ -0.46
SF3B1-210ENST00000482158 CLCN1P35523 988 aa12.18□□□□□ -0.46
SF3B1-210ENST00000482158 POTEBQ6S5H4 581 aa12.18□□□□□ -0.46
SF3B1-210ENST00000482158 FAM163AQ96GL9 167 aaPredicted RBP12.17□□□□□ -0.46
SF3B1-210ENST00000482158 ZBED2Q9BTP6 218 aa12.17□□□□□ -0.46
SF3B1-210ENST00000482158 GPCPD1Q9NPB8 672 aa12.17□□□□□ -0.46
SF3B1-210ENST00000482158 RBM46Q8TBY0 533 aaKnown RBP12.16□□□□□ -0.46
SF3B1-210ENST00000482158 ARHGAP33O14559 1287 aa12.15□□□□□ -0.46
SF3B1-210ENST00000482158 DMRTA1Q5VZB9 504 aa12.15□□□□□ -0.46
SF3B1-210ENST00000482158 NUDT18Q6ZVK8 323 aa12.15□□□□□ -0.46
SF3B1-210ENST00000482158 AXIN2Q9Y2T1 843 aa12.15□□□□□ -0.46
SF3B1-210ENST00000482158 FAM205CA6NFA0 338 aa12.14□□□□□ -0.47
SF3B1-210ENST00000482158 ONECUT3O60422 494 aaPredicted RBP12.14□□□□□ -0.47
SF3B1-210ENST00000482158 TATDN2Q93075 761 aa12.14□□□□□ -0.47
SF3B1-210ENST00000482158 ZNF687Q8N1G0 1237 aa12.13□□□□□ -0.47
SF3B1-210ENST00000482158 DDRGK1Q96HY6 314 aa12.13□□□□□ -0.47
SF3B1-210ENST00000482158 FAM217BQ9NTX9 383 aaPredicted RBP12.13□□□□□ -0.47
SF3B1-210ENST00000482158 RCCD1A6NED2 376 aa12.12□□□□□ -0.47
SF3B1-210ENST00000482158 SSTR3P32745 418 aaPredicted RBP12.12□□□□□ -0.47
SF3B1-210ENST00000482158 PACS2Q86VP3 889 aa12.11□□□□□ -0.47
SF3B1-210ENST00000482158 DAXXQ9UER7 740 aaPredicted RBP12.11□□□□□ -0.47
SF3B1-210ENST00000482158 PNMA3Q9UL41 463 aa12.11□□□□□ -0.47
SF3B1-210ENST00000482158 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.1□□□□□ -0.47
SF3B1-210ENST00000482158 NBPF26B4DH59 902 aa12.1□□□□□ -0.47
SF3B1-210ENST00000482158 SMAPO00193 183 aa12.1□□□□□ -0.47
SF3B1-210ENST00000482158 KCNH8Q96L42 1107 aa12.1□□□□□ -0.47
SF3B1-210ENST00000482158 HS3ST6Q96QI5 342 aa12.1□□□□□ -0.47
SF3B1-210ENST00000482158 SLC4A5Q9BY07 1137 aa12.1□□□□□ -0.47
SF3B1-210ENST00000482158 KIAA1468Q9P260 1216 aa12.1□□□□□ -0.47
SF3B1-210ENST00000482158 PBX2P40425 430 aa12.08□□□□□ -0.48
SF3B1-210ENST00000482158 DNAJB2P25686 324 aa12.05□□□□□ -0.48
SF3B1-210ENST00000482158 TMEM134Q9H6X4 195 aa12.05□□□□□ -0.48
SF3B1-210ENST00000482158 RABGEF1Q9UJ41 708 aa12.05□□□□□ -0.48
SF3B1-210ENST00000482158 VPS9D1Q9Y2B5 631 aa12.05□□□□□ -0.48
SF3B1-210ENST00000482158 BEGAINQ9BUH8 593 aa12.04□□□□□ -0.48
SF3B1-210ENST00000482158 GOPCQ9HD26 462 aa12.01□□□□□ -0.49
SF3B1-210ENST00000482158 SEPT9Q9UHD8 586 aaPredicted RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms