RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 KDM5DQ9BY66 1539 aa27.29■■□□□ 1.96
COL9A3-212ENST00000481800 FAM135AQ9P2D6 1515 aa27.28■■□□□ 1.96
COL9A3-212ENST00000481800 SHANK2Q9UPX8 1470 aa27.28■■□□□ 1.96
COL9A3-212ENST00000481800 KIF15Q9NS87 1388 aa27.27■■□□□ 1.96
COL9A3-212ENST00000481800 FAM50AQ14320 339 aaKnown RBP27.27■■□□□ 1.96
COL9A3-212ENST00000481800 DUOX2Q9NRD8 1548 aa27.26■■□□□ 1.95
COL9A3-212ENST00000481800 CHIC2Q9UKJ5 165 aa27.25■■□□□ 1.95
COL9A3-212ENST00000481800 FBXO31Q5XUX0 539 aaPredicted RBP27.24■■□□□ 1.95
COL9A3-212ENST00000481800 ANKRD30AQ9BXX3 1397 aa27.22■■□□□ 1.95
COL9A3-212ENST00000481800 PZPP20742 1482 aa27.21■■□□□ 1.95
COL9A3-212ENST00000481800 DNMT1P26358 1616 aaKnown RBP27.21■■□□□ 1.95
COL9A3-212ENST00000481800 TNRQ92752 1358 aa27.21■■□□□ 1.95
COL9A3-212ENST00000481800 EIF2AK4Q9P2K8 1649 aaKnown RBP27.19■■□□□ 1.94
COL9A3-212ENST00000481800 NCOA1Q15788 1441 aa27.19■■□□□ 1.94
COL9A3-212ENST00000481800 FBXO41Q8TF61 875 aa27.19■■□□□ 1.94
COL9A3-212ENST00000481800 ERBINQ96RT1 1412 aa27.18■■□□□ 1.94
COL9A3-212ENST00000481800 RNF17Q9BXT8 1623 aaKnown RBP27.18■■□□□ 1.94
COL9A3-212ENST00000481800 PTPRTO14522 1441 aa27.17■■□□□ 1.94
COL9A3-212ENST00000481800 CAMSAP1Q5T5Y3 1602 aa27.17■■□□□ 1.94
COL9A3-212ENST00000481800 MYO3AQ8NEV4 1616 aa27.17■■□□□ 1.94
COL9A3-212ENST00000481800 CROCC2H7BZ55 1655 aa27.17■■□□□ 1.94
COL9A3-212ENST00000481800 STRCQ7RTU9 1775 aa27.17■■□□□ 1.94
COL9A3-212ENST00000481800 CEP170BQ9Y4F5 1589 aaPredicted RBP27.15■■□□□ 1.94
COL9A3-212ENST00000481800 ABCC3O15438 1527 aa27.15■■□□□ 1.94
COL9A3-212ENST00000481800 NCKAP5LQ9HCH0 1330 aa27.15■■□□□ 1.94
COL9A3-212ENST00000481800 CERKQ8TCT0 537 aa27.14■■□□□ 1.94
COL9A3-212ENST00000481800 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.14■■□□□ 1.942e-6■□□□□ 8.7
COL9A3-212ENST00000481800 A2ML1A8K2U0 1454 aa27.13■■□□□ 1.93
COL9A3-212ENST00000481800 PKD2Q13563 968 aa27.13■■□□□ 1.93
COL9A3-212ENST00000481800 PPARGC1BQ86YN6 1023 aaKnown RBP27.13■■□□□ 1.93
COL9A3-212ENST00000481800 ZNF142P52746 1687 aaPredicted RBP27.11■■□□□ 1.93
COL9A3-212ENST00000481800 KANK1Q14678 1352 aa27.1■■□□□ 1.93
COL9A3-212ENST00000481800 PLA2R1Q13018 1463 aa27.1■■□□□ 1.93
COL9A3-212ENST00000481800 MROH1Q8NDA8 1641 aa27.08■■□□□ 1.93
COL9A3-212ENST00000481800 ZC3H13Q5T200 1668 aaKnown RBP27.08■■□□□ 1.93
COL9A3-212ENST00000481800 THEMISQ8N1K5 641 aaPredicted RBP27.06■■□□□ 1.92
COL9A3-212ENST00000481800 ADGRL2O95490 1459 aa27.06■■□□□ 1.92
COL9A3-212ENST00000481800 NLRP1Q9C000 1473 aa27.06■■□□□ 1.92
COL9A3-212ENST00000481800 PRDM15P57071 1507 aaPredicted RBP27.04■■□□□ 1.92
COL9A3-212ENST00000481800 ERVK-7P63135 1459 aa27.01■■□□□ 1.91
COL9A3-212ENST00000481800 SPATA31D1Q6ZQQ2 1576 aa27■■□□□ 1.91
COL9A3-212ENST00000481800 ARHGAP31Q2M1Z3 1444 aa26.99■■□□□ 1.91
COL9A3-212ENST00000481800 ANKLE2Q86XL3 938 aa26.99■■□□□ 1.91
COL9A3-212ENST00000481800 ANKRD50Q9ULJ7 1429 aa26.99■■□□□ 1.91
COL9A3-212ENST00000481800 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.98■■□□□ 1.91
COL9A3-212ENST00000481800 UGGT1Q9NYU2 1555 aa26.98■■□□□ 1.91
COL9A3-212ENST00000481800 ITGAEP38570 1179 aa26.98■■□□□ 1.91
COL9A3-212ENST00000481800 CEP152O94986 1710 aa26.98■■□□□ 1.91
COL9A3-212ENST00000481800 DEPDC5O75140 1603 aa26.95■■□□□ 1.91
COL9A3-212ENST00000481800 ROCK1Q13464 1354 aa26.93■■□□□ 1.9
COL9A3-212ENST00000481800 ZNF335Q9H4Z2 1342 aaPredicted RBP26.91■■□□□ 1.9
COL9A3-212ENST00000481800 LMTK2Q8IWU2 1503 aa26.9■■□□□ 1.9
COL9A3-212ENST00000481800 VWDEQ8N2E2 1590 aa26.88■■□□□ 1.89
COL9A3-212ENST00000481800 LTBP4Q8N2S1 1624 aa26.88■■□□□ 1.89
COL9A3-212ENST00000481800 STAG3Q9UJ98 1225 aa26.87■■□□□ 1.89
COL9A3-212ENST00000481800 NPHP4O75161 1426 aaPredicted RBP26.83■■□□□ 1.89
COL9A3-212ENST00000481800 NEURL4Q96JN8 1562 aa26.82■■□□□ 1.88
COL9A3-212ENST00000481800 EFCAB6Q5THR3 1501 aa26.8■■□□□ 1.88
COL9A3-212ENST00000481800 POLR1AO95602 1720 aaPredicted RBP26.8■■□□□ 1.88
COL9A3-212ENST00000481800 IDI1Q13907 227 aa26.8■■□□□ 1.88
COL9A3-212ENST00000481800 CFAP65Q6ZU64 1925 aaKnown RBP26.8■■□□□ 1.88
COL9A3-212ENST00000481800 MED14O60244 1454 aa26.8■■□□□ 1.88
COL9A3-212ENST00000481800 IQSEC2Q5JU85 1478 aa26.8■■□□□ 1.88
COL9A3-212ENST00000481800 EID1Q9Y6B2 187 aa26.79■■□□□ 1.88
COL9A3-212ENST00000481800 RRBP1Q9P2E9 1410 aaKnown RBP26.79■■□□□ 1.88
COL9A3-212ENST00000481800 TXNDC2Q86VQ3 553 aa26.78■■□□□ 1.88
COL9A3-212ENST00000481800 NOS1P29475 1434 aa26.77■■□□□ 1.88
COL9A3-212ENST00000481800 SLC52A1Q9NWF4 448 aa26.77■■□□□ 1.88
COL9A3-212ENST00000481800 RPRD2Q5VT52 1461 aaKnown RBP26.76■■□□□ 1.87
COL9A3-212ENST00000481800 UBR1Q8IWV7 1749 aa26.75■■□□□ 1.87
COL9A3-212ENST00000481800 NUP155O75694 1391 aa26.74■■□□□ 1.87
COL9A3-212ENST00000481800 LTKP29376 864 aa26.74■■□□□ 1.87
COL9A3-212ENST00000481800 SCAF11Q99590 1463 aaKnown RBP26.74■■□□□ 1.87
COL9A3-212ENST00000481800 TMEM2Q9UHN6 1383 aa26.72■■□□□ 1.87
COL9A3-212ENST00000481800 UNC13BO14795 1591 aa26.72■■□□□ 1.87
COL9A3-212ENST00000481800 ARHGAP23Q9P227 1491 aa26.72■■□□□ 1.87
COL9A3-212ENST00000481800 SLIT1O75093 1534 aa26.71■■□□□ 1.87
COL9A3-212ENST00000481800 PIK3C2BO00750 1634 aa26.71■■□□□ 1.87
COL9A3-212ENST00000481800 SYNMO15061 1565 aa26.71■■□□□ 1.87
COL9A3-212ENST00000481800 UBAP1LF5GYI3 381 aa26.7■■□□□ 1.86
COL9A3-212ENST00000481800 TET3O43151 1660 aa26.7■■□□□ 1.86
COL9A3-212ENST00000481800 IQGAP1P46940 1657 aa26.68■■□□□ 1.86
COL9A3-212ENST00000481800 CPS1P31327 1500 aa26.68■■□□□ 1.86
COL9A3-212ENST00000481800 CHGAP10645 457 aaKnown RBP26.63■■□□□ 1.85
COL9A3-212ENST00000481800 ADGRB3O60242 1522 aa26.63■■□□□ 1.85
COL9A3-212ENST00000481800 IQGAP3Q86VI3 1631 aa26.62■■□□□ 1.85
COL9A3-212ENST00000481800 KDM5AP29375 1690 aaKnown RBP26.61■■□□□ 1.85
COL9A3-212ENST00000481800 GCC2Q8IWJ2 1684 aa26.61■■□□□ 1.85
COL9A3-212ENST00000481800 HDGFP51858 240 aaKnown RBP26.61■■□□□ 1.85
COL9A3-212ENST00000481800 BCANQ96GW7 911 aa26.6■■□□□ 1.85
COL9A3-212ENST00000481800 NAIPQ13075 1403 aa26.59■■□□□ 1.85
COL9A3-212ENST00000481800 TOM1O60784 492 aa26.58■■□□□ 1.85
COL9A3-212ENST00000481800 PPP1R15AO75807 674 aaPredicted RBP26.57■■□□□ 1.84
COL9A3-212ENST00000481800 E9PCH4 1651 aa26.56■■□□□ 1.84
COL9A3-212ENST00000481800 TRIM52Q96A61 297 aa26.54■■□□□ 1.84
COL9A3-212ENST00000481800 SLC26A8Q96RN1 970 aa26.54■■□□□ 1.84
COL9A3-212ENST00000481800 SCAF1Q9H7N4 1312 aaKnown RBP26.54■■□□□ 1.84
COL9A3-212ENST00000481800 HFM1A2PYH4 1435 aa26.53■■□□□ 1.84
COL9A3-212ENST00000481800 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.52■■□□□ 1.84
COL9A3-212ENST00000481800 RIMS2Q9UQ26 1411 aa26.52■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms