RNA–Protein interactions for RNA: ENST00000481786.1

USH2A-204, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 626 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-204ENST00000481786 KIAA1468Q9P260 1216 aa6.86□□□□□ -1.31
USH2A-204ENST00000481786 EMILIN3Q9NT22 766 aa6.83□□□□□ -1.32
USH2A-204ENST00000481786 CHGAP10645 457 aaKnown RBP6.82□□□□□ -1.32
USH2A-204ENST00000481786 MAP3K9P80192 1104 aa6.82□□□□□ -1.32
USH2A-204ENST00000481786 LAPTM4BQ86VI4 370 aa6.82□□□□□ -1.32
USH2A-204ENST00000481786 LAPTM4AQ15012 233 aa6.81□□□□□ -1.32
USH2A-204ENST00000481786 LARP6Q9BRS8 491 aaKnown RBP6.81□□□□□ -1.32
USH2A-204ENST00000481786 HPS5Q9UPZ3 1129 aa6.81□□□□□ -1.32
USH2A-204ENST00000481786 PRKD2Q9BZL6 878 aa6.8□□□□□ -1.32
USH2A-204ENST00000481786 PDE4AP27815 886 aa6.79□□□□□ -1.32
USH2A-204ENST00000481786 NYAP1Q6ZVC0 841 aa6.79□□□□□ -1.32
USH2A-204ENST00000481786 ZNF775Q96BV0 537 aaPredicted RBP6.79□□□□□ -1.32
USH2A-204ENST00000481786 ZNF787Q6DD87 383 aa6.78□□□□□ -1.32
USH2A-204ENST00000481786 TSR3Q9UJK0 312 aaKnown RBP6.78□□□□□ -1.32
USH2A-204ENST00000481786 C6orf132Q5T0Z8 1188 aa6.77□□□□□ -1.33
USH2A-204ENST00000481786 TYW1BQ6NUM6 668 aa6.77□□□□□ -1.33
USH2A-204ENST00000481786 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.77□□□□□ -1.33
USH2A-204ENST00000481786 NRG2O14511 850 aaPredicted RBP6.76□□□□□ -1.33
USH2A-204ENST00000481786 FAM98CQ17RN3 349 aaKnown RBP6.76□□□□□ -1.33
USH2A-204ENST00000481786 TJAP1Q5JTD0 557 aa6.76□□□□□ -1.33
USH2A-204ENST00000481786 DDX27Q96GQ7 796 aaKnown RBP6.76□□□□□ -1.33
USH2A-204ENST00000481786 TRIM6-TRIM34B2RNG4 842 aa6.75□□□□□ -1.33
USH2A-204ENST00000481786 PHF14O94880 888 aa6.75□□□□□ -1.33
USH2A-204ENST00000481786 PPP1R18Q6NYC8 613 aa6.75□□□□□ -1.33
USH2A-204ENST00000481786 LRCH3Q96II8 777 aa6.75□□□□□ -1.33
USH2A-204ENST00000481786 ZNF516Q92618 1163 aa6.74□□□□□ -1.33
USH2A-204ENST00000481786 FBXW7Q969H0 707 aa6.74□□□□□ -1.33
USH2A-204ENST00000481786 RBM33Q96EV2 1170 aaKnown RBP6.74□□□□□ -1.33
USH2A-204ENST00000481786 MFSD10Q14728 455 aa6.73□□□□□ -1.33
USH2A-204ENST00000481786 TSKSQ9UJT2 592 aa6.73□□□□□ -1.33
USH2A-204ENST00000481786 ONECUT3O60422 494 aaPredicted RBP6.72□□□□□ -1.33
USH2A-204ENST00000481786 C3orf80F5H4A9 247 aa6.71□□□□□ -1.34
USH2A-204ENST00000481786 SMAPO00193 183 aa6.71□□□□□ -1.34
USH2A-204ENST00000481786 MTRQ99707 1265 aa6.71□□□□□ -1.34
USH2A-204ENST00000481786 DNAJC5Q9H3Z4 198 aa6.71□□□□□ -1.34
USH2A-204ENST00000481786 PPP4CP60510 307 aa6.7□□□□□ -1.34
USH2A-204ENST00000481786 CADPS2Q86UW7 1296 aa6.7□□□□□ -1.34
USH2A-204ENST00000481786 NKX2-3Q8TAU0 364 aa6.7□□□□□ -1.34
USH2A-204ENST00000481786 PDZRN3Q9UPQ7 1066 aa6.7□□□□□ -1.34
USH2A-204ENST00000481786 POTECB2RU33 542 aa6.69□□□□□ -1.34
USH2A-204ENST00000481786 GTPBP6O43824 516 aaPredicted RBP6.69□□□□□ -1.34
USH2A-204ENST00000481786 SAMD7Q7Z3H4 446 aa6.69□□□□□ -1.34
USH2A-204ENST00000481786 V9GY48 417 aaPredicted RBP6.69□□□□□ -1.34
USH2A-204ENST00000481786 TSR1Q2NL82 804 aaKnown RBP6.68□□□□□ -1.34
USH2A-204ENST00000481786 DDX12PQ92771 950 aa6.68□□□□□ -1.34
USH2A-204ENST00000481786 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.68□□□□□ -1.34
USH2A-204ENST00000481786 FAM198AQ9UFP1 575 aa6.68□□□□□ -1.34
USH2A-204ENST00000481786 DPYSL4O14531 572 aa6.66□□□□□ -1.34
USH2A-204ENST00000481786 EPAS1Q99814 870 aa6.66□□□□□ -1.34
USH2A-204ENST00000481786 IL21Q9HBE4 155 aa6.66□□□□□ -1.34
USH2A-204ENST00000481786 APLP1P51693 650 aa6.65□□□□□ -1.34
USH2A-204ENST00000481786 TRIM67Q6ZTA4 783 aa6.65□□□□□ -1.34
USH2A-204ENST00000481786 RYDENQ9NUL5 291 aaKnown RBP6.64□□□□□ -1.35
USH2A-204ENST00000481786 PACS2Q86VP3 889 aa6.63□□□□□ -1.35
USH2A-204ENST00000481786 PRIM1P49642 420 aaKnown RBP6.62□□□□□ -1.35
USH2A-204ENST00000481786 EMID1Q96A84 441 aaPredicted RBP6.62□□□□□ -1.35
USH2A-204ENST00000481786 CDCA7LQ96GN5 454 aa6.61□□□□□ -1.35
USH2A-204ENST00000481786 MAP3K7O43318 606 aa6.6□□□□□ -1.35
USH2A-204ENST00000481786 RNF40O75150 1001 aa6.6□□□□□ -1.35
USH2A-204ENST00000481786 COPS2P61201 443 aa6.6□□□□□ -1.35
USH2A-204ENST00000481786 MYT1Q01538 1121 aa6.6□□□□□ -1.35
USH2A-204ENST00000481786 EN1Q05925 392 aaPredicted RBP6.6□□□□□ -1.35
USH2A-204ENST00000481786 CAMK2BQ13554 666 aa6.6□□□□□ -1.35
USH2A-204ENST00000481786 NBR1Q14596 966 aa6.6□□□□□ -1.35
USH2A-204ENST00000481786 LCE2AQ5TA79 106 aaPredicted RBP6.58□□□□□ -1.36
USH2A-204ENST00000481786 TATDN2Q93075 761 aa6.58□□□□□ -1.36
USH2A-204ENST00000481786 PNMA3Q9UL41 463 aa6.58□□□□□ -1.36
USH2A-204ENST00000481786 PRSS12P56730 875 aa6.57□□□□□ -1.36
USH2A-204ENST00000481786 NUDT18Q6ZVK8 323 aa6.55□□□□□ -1.36
USH2A-204ENST00000481786 RNF223E7ERA6 249 aa6.54□□□□□ -1.36
USH2A-204ENST00000481786 PKDCCQ504Y2 493 aa6.54□□□□□ -1.36
USH2A-204ENST00000481786 CDHR5Q9HBB8 845 aa6.54□□□□□ -1.36
USH2A-204ENST00000481786 PPEF1O14829 653 aaPredicted RBP6.53□□□□□ -1.36
USH2A-204ENST00000481786 ST8SIA5O15466 376 aa6.53□□□□□ -1.36
USH2A-204ENST00000481786 SLC19A1P41440 591 aa6.53□□□□□ -1.36
USH2A-204ENST00000481786 TREML4Q6UXN2 200 aa6.53□□□□□ -1.36
USH2A-204ENST00000481786 ZPR1O75312 459 aa6.52□□□□□ -1.37
USH2A-204ENST00000481786 SWT1Q5T5J6 900 aaKnown RBP6.52□□□□□ -1.37
USH2A-204ENST00000481786 NBPF26B4DH59 902 aa6.51□□□□□ -1.37
USH2A-204ENST00000481786 TNFRSF10AO00220 468 aa6.51□□□□□ -1.37
USH2A-204ENST00000481786 DGAT1O75907 488 aa6.51□□□□□ -1.37
USH2A-204ENST00000481786 GGCXP38435 758 aa6.51□□□□□ -1.37
USH2A-204ENST00000481786 SPRYD7Q5W111 196 aa6.51□□□□□ -1.37
USH2A-204ENST00000481786 TMUB1Q9BVT8 246 aa6.51□□□□□ -1.37
USH2A-204ENST00000481786 TLL1O43897 1013 aa6.5□□□□□ -1.37
USH2A-204ENST00000481786 PDIA6Q15084 440 aa6.5□□□□□ -1.37
USH2A-204ENST00000481786 LIAT1Q6ZQX7 453 aa6.5□□□□□ -1.37
USH2A-204ENST00000481786 DACH1Q9UI36 760 aa6.5□□□□□ -1.37
USH2A-204ENST00000481786 FAM187AA6NFU0 413 aa6.49□□□□□ -1.37
USH2A-204ENST00000481786 BLOC1S3Q6QNY0 202 aa6.49□□□□□ -1.37
USH2A-204ENST00000481786 GRXCR2A6NFK2 248 aa6.48□□□□□ -1.37
USH2A-204ENST00000481786 GDF9O60383 454 aa6.48□□□□□ -1.37
USH2A-204ENST00000481786 ZNF598Q86UK7 904 aaKnown RBP6.48□□□□□ -1.37
USH2A-204ENST00000481786 AAASQ9NRG9 546 aa6.48□□□□□ -1.37
USH2A-204ENST00000481786 HDGFP51858 240 aaKnown RBP6.47□□□□□ -1.37
USH2A-204ENST00000481786 PRR20EP86478 221 aa6.47□□□□□ -1.37
USH2A-204ENST00000481786 PRR20CP86479 221 aa6.47□□□□□ -1.37
USH2A-204ENST00000481786 PRR20DP86480 221 aa6.47□□□□□ -1.37
USH2A-204ENST00000481786 PRR20BP86481 221 aa6.47□□□□□ -1.37
USH2A-204ENST00000481786 PRR20AP86496 221 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms