RNA–Protein interactions for RNA: ENST00000479625.1

GPNMB-211, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 788 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-211ENST00000479625 UBAP1LF5GYI3 381 aa16.15■□□□□ 0.18
GPNMB-211ENST00000479625 ZMYM3Q14202 1370 aa16.14■□□□□ 0.17
GPNMB-211ENST00000479625 CASKIN1Q8WXD9 1431 aa16.12■□□□□ 0.17
GPNMB-211ENST00000479625 ADGBQ8N7X0 1667 aa16.12■□□□□ 0.17
GPNMB-211ENST00000479625 DNMT1P26358 1616 aaKnown RBP16.12■□□□□ 0.17
GPNMB-211ENST00000479625 PTPRKQ15262 1439 aa16.11■□□□□ 0.17
GPNMB-211ENST00000479625 NEURL4Q96JN8 1562 aa16.1■□□□□ 0.17
GPNMB-211ENST00000479625 ZNF777Q9ULD5 760 aaPredicted RBP16.09■□□□□ 0.17
GPNMB-211ENST00000479625 A2MP01023 1474 aa16.09■□□□□ 0.17
GPNMB-211ENST00000479625 GPATCH8Q9UKJ3 1502 aaKnown RBP16.09■□□□□ 0.17
GPNMB-211ENST00000479625 SPAG9O60271 1321 aaKnown RBP16.07■□□□□ 0.16
GPNMB-211ENST00000479625 FYCO1Q9BQS8 1478 aa16.07■□□□□ 0.16
GPNMB-211ENST00000479625 APLP2Q06481 763 aa16.06■□□□□ 0.16
GPNMB-211ENST00000479625 HNRNPMP52272 730 aaKnown RBP eCLIP16.05■□□□□ 0.16
GPNMB-211ENST00000479625 A2ML1A8K2U0 1454 aa16.04■□□□□ 0.16
GPNMB-211ENST00000479625 PKD2Q13563 968 aa16.04■□□□□ 0.16
GPNMB-211ENST00000479625 HSPA1LP34931 641 aa16.03■□□□□ 0.16
GPNMB-211ENST00000479625 ALKQ9UM73 1620 aa16.03■□□□□ 0.16
GPNMB-211ENST00000479625 CPS1P31327 1500 aa16.03■□□□□ 0.16
GPNMB-211ENST00000479625 MYCNP04198 464 aaPredicted RBP16.02■□□□□ 0.16
GPNMB-211ENST00000479625 SAMD1Q6SPF0 538 aaPredicted RBP16.02■□□□□ 0.16
GPNMB-211ENST00000479625 VWDEQ8N2E2 1590 aa16.01■□□□□ 0.15
GPNMB-211ENST00000479625 DSG3P32926 999 aa16.01■□□□□ 0.15
GPNMB-211ENST00000479625 PIP4K2BP78356 416 aa16.01■□□□□ 0.15
GPNMB-211ENST00000479625 GGT6Q6P531 493 aa16.01■□□□□ 0.15
GPNMB-211ENST00000479625 PLEKHH2Q8IVE3 1493 aa16.01■□□□□ 0.15
GPNMB-211ENST00000479625 TIAM1Q13009 1591 aa16■□□□□ 0.15
GPNMB-211ENST00000479625 STRCP1A6NGW2 1772 aa16■□□□□ 0.15
GPNMB-211ENST00000479625 KIAA1107Q9UPP5 1409 aa16■□□□□ 0.15
GPNMB-211ENST00000479625 SHANK2Q9UPX8 1470 aa15.99■□□□□ 0.15
GPNMB-211ENST00000479625 FOXD4L1Q9NU39 408 aa15.99■□□□□ 0.15
GPNMB-211ENST00000479625 IQGAP1P46940 1657 aa15.96■□□□□ 0.15
GPNMB-211ENST00000479625 KDM5DQ9BY66 1539 aa15.96■□□□□ 0.15
GPNMB-211ENST00000479625 ZNF219Q9P2Y4 722 aaPredicted RBP15.95■□□□□ 0.14
GPNMB-211ENST00000479625 DEPDC5O75140 1603 aa15.94■□□□□ 0.14
GPNMB-211ENST00000479625 CFDP1Q9UEE9 299 aaPredicted RBP15.94■□□□□ 0.14
GPNMB-211ENST00000479625 CCNB3Q8WWL7 1395 aa15.94■□□□□ 0.14
GPNMB-211ENST00000479625 PZPP20742 1482 aa15.94■□□□□ 0.14
GPNMB-211ENST00000479625 RNF17Q9BXT8 1623 aaKnown RBP15.94■□□□□ 0.14
GPNMB-211ENST00000479625 MBD5Q9P267 1494 aa15.93■□□□□ 0.14
GPNMB-211ENST00000479625 TNRQ92752 1358 aa15.93■□□□□ 0.14
GPNMB-211ENST00000479625 SYNMO15061 1565 aa15.92■□□□□ 0.14
GPNMB-211ENST00000479625 ZNF644Q9H582 1327 aaPredicted RBP15.92■□□□□ 0.14
GPNMB-211ENST00000479625 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.91■□□□□ 0.14
GPNMB-211ENST00000479625 TOM1O60784 492 aa15.91■□□□□ 0.14
GPNMB-211ENST00000479625 FBXO31Q5XUX0 539 aaPredicted RBP15.91■□□□□ 0.14
GPNMB-211ENST00000479625 UGGT1Q9NYU2 1555 aa15.91■□□□□ 0.14
GPNMB-211ENST00000479625 EHBP1L1Q8N3D4 1523 aa15.9■□□□□ 0.14
GPNMB-211ENST00000479625 FAM135AQ9P2D6 1515 aa15.9■□□□□ 0.14
GPNMB-211ENST00000479625 ZC3H13Q5T200 1668 aaKnown RBP15.9■□□□□ 0.14
GPNMB-211ENST00000479625 ABCB7O75027 752 aa15.9■□□□□ 0.14
GPNMB-211ENST00000479625 NPHP4O75161 1426 aaPredicted RBP15.88■□□□□ 0.13
GPNMB-211ENST00000479625 XIRP1Q702N8 1843 aaKnown RBP15.88■□□□□ 0.13
GPNMB-211ENST00000479625 MED14O60244 1454 aa15.88■□□□□ 0.13
GPNMB-211ENST00000479625 MTUS2Q5JR59 1369 aa15.87■□□□□ 0.13
GPNMB-211ENST00000479625 DHX29Q7Z478 1369 aaKnown RBP15.87■□□□□ 0.13
GPNMB-211ENST00000479625 RTEL1-TNFRSF6BF6WH68 1400 aa15.87■□□□□ 0.13
GPNMB-211ENST00000479625 NLRP1Q9C000 1473 aa15.86■□□□□ 0.13
GPNMB-211ENST00000479625 LRRC7Q96NW7 1537 aa15.86■□□□□ 0.13
GPNMB-211ENST00000479625 CEP152O94986 1710 aa15.85■□□□□ 0.13
GPNMB-211ENST00000479625 CCDC141Q6ZP82 1450 aa15.85■□□□□ 0.13
GPNMB-211ENST00000479625 UBR1Q8IWV7 1749 aa15.85■□□□□ 0.13
GPNMB-211ENST00000479625 CAMSAP2Q08AD1 1489 aa15.84■□□□□ 0.13
GPNMB-211ENST00000479625 KIF3BO15066 747 aa15.84■□□□□ 0.13
GPNMB-211ENST00000479625 ZBTB22O15209 634 aa15.83■□□□□ 0.12
GPNMB-211ENST00000479625 ANKLE2Q86XL3 938 aa15.83■□□□□ 0.12
GPNMB-211ENST00000479625 MIA2Q96PC5 1412 aa15.83■□□□□ 0.12
GPNMB-211ENST00000479625 CFAP65Q6ZU64 1925 aaKnown RBP15.82■□□□□ 0.12
GPNMB-211ENST00000479625 MROH1Q8NDA8 1641 aa15.8■□□□□ 0.12
GPNMB-211ENST00000479625 ABCC3O15438 1527 aa15.8■□□□□ 0.12
GPNMB-211ENST00000479625 CEP162Q5TB80 1403 aa15.8■□□□□ 0.12
GPNMB-211ENST00000479625 ARHGEF5Q12774 1597 aa15.79■□□□□ 0.12
GPNMB-211ENST00000479625 WASHC2CQ9Y4E1 1318 aa15.79■□□□□ 0.12
GPNMB-211ENST00000479625 THEMISQ8N1K5 641 aaPredicted RBP15.79■□□□□ 0.12
GPNMB-211ENST00000479625 SETD1AO15047 1707 aaKnown RBP15.79■□□□□ 0.12
GPNMB-211ENST00000479625 EIF2AK4Q9P2K8 1649 aaKnown RBP15.78■□□□□ 0.12
GPNMB-211ENST00000479625 ERVK-7P63135 1459 aa15.78■□□□□ 0.12
GPNMB-211ENST00000479625 NCOA2Q15596 1464 aa15.77■□□□□ 0.11
GPNMB-211ENST00000479625 RGS17Q9UGC6 210 aaPredicted RBP15.75■□□□□ 0.11
GPNMB-211ENST00000479625 MAST1Q9Y2H9 1570 aa15.75■□□□□ 0.11
GPNMB-211ENST00000479625 SCAF11Q99590 1463 aaKnown RBP15.73■□□□□ 0.11
GPNMB-211ENST00000479625 ROBO1Q9Y6N7 1651 aa15.72■□□□□ 0.11
GPNMB-211ENST00000479625 PIK3C2BO00750 1634 aa15.72■□□□□ 0.11
GPNMB-211ENST00000479625 SLIT1O75093 1534 aa15.7■□□□□ 0.1
GPNMB-211ENST00000479625 ARHGAP23Q9P227 1491 aa15.7■□□□□ 0.1
GPNMB-211ENST00000479625 CROCC2H7BZ55 1655 aa15.67■□□□□ 0.1
GPNMB-211ENST00000479625 PRDM15P57071 1507 aaPredicted RBP15.66■□□□□ 0.1
GPNMB-211ENST00000479625 MAP3K1Q13233 1512 aa15.66■□□□□ 0.1
GPNMB-211ENST00000479625 ATF5Q9Y2D1 282 aaPredicted RBP15.65■□□□□ 0.1
GPNMB-211ENST00000479625 LTKP29376 864 aa15.64■□□□□ 0.09
GPNMB-211ENST00000479625 POTEAQ6S8J7 498 aa15.64■□□□□ 0.09
GPNMB-211ENST00000479625 PHLPP1O60346 1717 aa15.63■□□□□ 0.09
GPNMB-211ENST00000479625 RSPH4AQ5TD94 716 aa15.62■□□□□ 0.09
GPNMB-211ENST00000479625 KDM5AP29375 1690 aaKnown RBP15.62■□□□□ 0.09
GPNMB-211ENST00000479625 TSPY4P0CV99 314 aa15.61■□□□□ 0.09
GPNMB-211ENST00000479625 TSPY10P0CW01 314 aa15.61■□□□□ 0.09
GPNMB-211ENST00000479625 DUOX2Q9NRD8 1548 aa15.61■□□□□ 0.09
GPNMB-211ENST00000479625 NWD1Q149M9 1564 aa15.61■□□□□ 0.09
GPNMB-211ENST00000479625 FAM135BQ49AJ0 1406 aa15.6■□□□□ 0.09
GPNMB-211ENST00000479625 TXNDC2Q86VQ3 553 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms