RNA–Protein interactions for RNA: ENST00000477988.1

NCKAP1-204, Transcript of NCK associated protein 1, humanhuman

TSL 2

Gene NCKAP1, Length 612 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKAP1-204ENST00000477988 KCNC4Q03721 635 aa11.92□□□□□ -0.5
NCKAP1-204ENST00000477988 ZFRQ96KR1 1074 aaKnown RBP11.91□□□□□ -0.5
NCKAP1-204ENST00000477988 WBP1LQ9NX94 342 aa11.91□□□□□ -0.5
NCKAP1-204ENST00000477988 LCE2BO14633 110 aa11.9□□□□□ -0.5
NCKAP1-204ENST00000477988 ONECUT3O60422 494 aaPredicted RBP11.9□□□□□ -0.5
NCKAP1-204ENST00000477988 MFSD10Q14728 455 aa11.89□□□□□ -0.51
NCKAP1-204ENST00000477988 DDX27Q96GQ7 796 aaKnown RBP11.89□□□□□ -0.51
NCKAP1-204ENST00000477988 LARP6Q9BRS8 491 aaKnown RBP11.89□□□□□ -0.51
NCKAP1-204ENST00000477988 EMILIN3Q9NT22 766 aa11.89□□□□□ -0.51
NCKAP1-204ENST00000477988 KIAA1468Q9P260 1216 aa11.89□□□□□ -0.51
NCKAP1-204ENST00000477988 LAPTM4AQ15012 233 aa11.88□□□□□ -0.51
NCKAP1-204ENST00000477988 TYW1BQ6NUM6 668 aa11.88□□□□□ -0.51
NCKAP1-204ENST00000477988 FBXW7Q969H0 707 aa11.88□□□□□ -0.51
NCKAP1-204ENST00000477988 PHF14O94880 888 aa11.87□□□□□ -0.51
NCKAP1-204ENST00000477988 SEPT9Q9UHD8 586 aaPredicted RBP11.82□□□□□ -0.52
NCKAP1-204ENST00000477988 TRAF7Q6Q0C0 670 aa11.81□□□□□ -0.52
NCKAP1-204ENST00000477988 TSR3Q9UJK0 312 aaKnown RBP11.8□□□□□ -0.52
NCKAP1-204ENST00000477988 TRIM6-TRIM34B2RNG4 842 aa11.79□□□□□ -0.52
NCKAP1-204ENST00000477988 GTPBP6O43824 516 aaPredicted RBP11.79□□□□□ -0.52
NCKAP1-204ENST00000477988 GFRA3O60609 400 aa11.79□□□□□ -0.52
NCKAP1-204ENST00000477988 FAM98CQ17RN3 349 aaKnown RBP11.79□□□□□ -0.52
NCKAP1-204ENST00000477988 C6orf132Q5T0Z8 1188 aa11.79□□□□□ -0.52
NCKAP1-204ENST00000477988 EPAS1Q99814 870 aa11.77□□□□□ -0.53
NCKAP1-204ENST00000477988 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.77□□□□□ -0.53
NCKAP1-204ENST00000477988 HPS5Q9UPZ3 1129 aa11.77□□□□□ -0.53
NCKAP1-204ENST00000477988 LRCH3Q96II8 777 aa11.75□□□□□ -0.53
NCKAP1-204ENST00000477988 NRG2O14511 850 aaPredicted RBP11.7□□□□□ -0.54
NCKAP1-204ENST00000477988 TJAP1Q5JTD0 557 aa11.7□□□□□ -0.54
NCKAP1-204ENST00000477988 PRKD2Q9BZL6 878 aa11.69□□□□□ -0.54
NCKAP1-204ENST00000477988 CAMK2BQ13554 666 aa11.67□□□□□ -0.54
NCKAP1-204ENST00000477988 PPP4CP60510 307 aa11.65□□□□□ -0.54
NCKAP1-204ENST00000477988 CADPS2Q86UW7 1296 aa11.65□□□□□ -0.54
NCKAP1-204ENST00000477988 TSKSQ9UJT2 592 aa11.65□□□□□ -0.54
NCKAP1-204ENST00000477988 V9GY48 417 aaPredicted RBP11.65□□□□□ -0.54
NCKAP1-204ENST00000477988 RBM33Q96EV2 1170 aaKnown RBP11.64□□□□□ -0.55
NCKAP1-204ENST00000477988 PACS2Q86VP3 889 aa11.63□□□□□ -0.55
NCKAP1-204ENST00000477988 DPYSL4O14531 572 aa11.62□□□□□ -0.55
NCKAP1-204ENST00000477988 PPP1R18Q6NYC8 613 aa11.62□□□□□ -0.55
NCKAP1-204ENST00000477988 MTRQ99707 1265 aa11.6□□□□□ -0.55
NCKAP1-204ENST00000477988 IL21Q9HBE4 155 aa11.6□□□□□ -0.55
NCKAP1-204ENST00000477988 DDX12PQ92771 950 aa11.59□□□□□ -0.55
NCKAP1-204ENST00000477988 EN1Q05925 392 aaPredicted RBP11.58□□□□□ -0.56
NCKAP1-204ENST00000477988 SAMD7Q7Z3H4 446 aa11.58□□□□□ -0.56
NCKAP1-204ENST00000477988 TSR1Q2NL82 804 aaKnown RBP11.57□□□□□ -0.56
NCKAP1-204ENST00000477988 ZNF787Q6DD87 383 aa11.57□□□□□ -0.56
NCKAP1-204ENST00000477988 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.56□□□□□ -0.56
NCKAP1-204ENST00000477988 ZNF516Q92618 1163 aa11.54□□□□□ -0.56
NCKAP1-204ENST00000477988 FAM198AQ9UFP1 575 aa11.54□□□□□ -0.56
NCKAP1-204ENST00000477988 SMAPO00193 183 aa11.53□□□□□ -0.56
NCKAP1-204ENST00000477988 MAP3K7O43318 606 aa11.52□□□□□ -0.57
NCKAP1-204ENST00000477988 NBR1Q14596 966 aa11.52□□□□□ -0.57
NCKAP1-204ENST00000477988 CDCA7LQ96GN5 454 aa11.52□□□□□ -0.57
NCKAP1-204ENST00000477988 PDZRN3Q9UPQ7 1066 aa11.52□□□□□ -0.57
NCKAP1-204ENST00000477988 C3orf80F5H4A9 247 aa11.51□□□□□ -0.57
NCKAP1-204ENST00000477988 ZNF775Q96BV0 537 aaPredicted RBP11.51□□□□□ -0.57
NCKAP1-204ENST00000477988 PRSS12P56730 875 aa11.5□□□□□ -0.57
NCKAP1-204ENST00000477988 TATDN2Q93075 761 aa11.48□□□□□ -0.57
NCKAP1-204ENST00000477988 APLP1P51693 650 aa11.47□□□□□ -0.57
NCKAP1-204ENST00000477988 PDIA6Q15084 440 aa11.47□□□□□ -0.57
NCKAP1-204ENST00000477988 NKX2-3Q8TAU0 364 aa11.47□□□□□ -0.57
NCKAP1-204ENST00000477988 CERKQ8TCT0 537 aa11.46□□□□□ -0.57
NCKAP1-204ENST00000477988 NBPF26B4DH59 902 aa11.44□□□□□ -0.58
NCKAP1-204ENST00000477988 PNMA3Q9UL41 463 aa11.44□□□□□ -0.58
NCKAP1-204ENST00000477988 PRIM1P49642 420 aaKnown RBP11.42□□□□□ -0.58
NCKAP1-204ENST00000477988 TMUB1Q9BVT8 246 aa11.42□□□□□ -0.58
NCKAP1-204ENST00000477988 SPDYE16A6NNV3 312 aaPredicted RBP11.41□□□□□ -0.58
NCKAP1-204ENST00000477988 GGCXP38435 758 aa11.4□□□□□ -0.58
NCKAP1-204ENST00000477988 TRIM67Q6ZTA4 783 aa11.4□□□□□ -0.58
NCKAP1-204ENST00000477988 HDGFP51858 240 aaKnown RBP11.38□□□□□ -0.59
NCKAP1-204ENST00000477988 NUDT18Q6ZVK8 323 aa11.38□□□□□ -0.59
NCKAP1-204ENST00000477988 RNF40O75150 1001 aa11.37□□□□□ -0.59
NCKAP1-204ENST00000477988 RBM27Q9P2N5 1060 aaKnown RBP11.37□□□□□ -0.59
NCKAP1-204ENST00000477988 NECTIN2Q92692 538 aa11.36□□□□□ -0.59
NCKAP1-204ENST00000477988 COPS2P61201 443 aa11.35□□□□□ -0.59
NCKAP1-204ENST00000477988 EMID1Q96A84 441 aaPredicted RBP11.34□□□□□ -0.59
NCKAP1-204ENST00000477988 ZPR1O75312 459 aa11.33□□□□□ -0.6
NCKAP1-204ENST00000477988 DCAF8L2P0C7V8 631 aa11.33□□□□□ -0.6
NCKAP1-204ENST00000477988 MYT1Q01538 1121 aa11.33□□□□□ -0.6
NCKAP1-204ENST00000477988 TTC13Q8NBP0 860 aa11.32□□□□□ -0.6
NCKAP1-204ENST00000477988 CDHR5Q9HBB8 845 aa11.32□□□□□ -0.6
NCKAP1-204ENST00000477988 DGAT1O75907 488 aa11.31□□□□□ -0.6
NCKAP1-204ENST00000477988 SWT1Q5T5J6 900 aaKnown RBP11.31□□□□□ -0.6
NCKAP1-204ENST00000477988 SLF2Q8IX21 1173 aa11.31□□□□□ -0.6
NCKAP1-204ENST00000477988 SLC19A1P41440 591 aa11.3□□□□□ -0.6
NCKAP1-204ENST00000477988 GRXCR2A6NFK2 248 aa11.29□□□□□ -0.6
NCKAP1-204ENST00000477988 POTECB2RU33 542 aa11.29□□□□□ -0.6
NCKAP1-204ENST00000477988 RNF223E7ERA6 249 aa11.29□□□□□ -0.6
NCKAP1-204ENST00000477988 OSBPP22059 807 aa11.29□□□□□ -0.6
NCKAP1-204ENST00000477988 PRR20EP86478 221 aa11.29□□□□□ -0.6
NCKAP1-204ENST00000477988 PRR20CP86479 221 aa11.29□□□□□ -0.6
NCKAP1-204ENST00000477988 PRR20DP86480 221 aa11.29□□□□□ -0.6
NCKAP1-204ENST00000477988 PRR20BP86481 221 aa11.29□□□□□ -0.6
NCKAP1-204ENST00000477988 PRR20AP86496 221 aa11.29□□□□□ -0.6
NCKAP1-204ENST00000477988 PKDCCQ504Y2 493 aa11.29□□□□□ -0.6
NCKAP1-204ENST00000477988 ARIH1Q9Y4X5 557 aaPredicted RBP11.29□□□□□ -0.6
NCKAP1-204ENST00000477988 SPRYD7Q5W111 196 aa11.27□□□□□ -0.61
NCKAP1-204ENST00000477988 ZNF598Q86UK7 904 aaKnown RBP11.26□□□□□ -0.61
NCKAP1-204ENST00000477988 LCE2AQ5TA79 106 aaPredicted RBP11.24□□□□□ -0.61
NCKAP1-204ENST00000477988 NPDC1Q9NQX5 325 aaPredicted RBP11.24□□□□□ -0.61
NCKAP1-204ENST00000477988 PRR14Q9BWN1 585 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms