RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 MAGI2Q86UL8 1455 aa17.14■□□□□ 0.33
PTPRF-212ENST00000477970 WASHC2AQ641Q2 1341 aa17.14■□□□□ 0.33
PTPRF-212ENST00000477970 FAM135AQ9P2D6 1515 aa17.14■□□□□ 0.33
PTPRF-212ENST00000477970 HIRIP3Q9BW71 556 aaPredicted RBP17.14■□□□□ 0.33
PTPRF-212ENST00000477970 ABCC1P33527 1531 aa17.13■□□□□ 0.33
PTPRF-212ENST00000477970 NBPF8Q3BBV2 869 aa17.13■□□□□ 0.33
PTPRF-212ENST00000477970 NUP155O75694 1391 aa17.13■□□□□ 0.33
PTPRF-212ENST00000477970 DUOX2Q9NRD8 1548 aa17.12■□□□□ 0.33
PTPRF-212ENST00000477970 PKD2Q13563 968 aa17.12■□□□□ 0.33
PTPRF-212ENST00000477970 RALGAPBQ86X10 1494 aa17.12■□□□□ 0.33
PTPRF-212ENST00000477970 KDM5CP41229 1560 aa17.11■□□□□ 0.33
PTPRF-212ENST00000477970 HNRNPMP52272 730 aaKnown RBP eCLIP17.11■□□□□ 0.33
PTPRF-212ENST00000477970 CCDC7Q96M83 1385 aa17.11■□□□□ 0.33
PTPRF-212ENST00000477970 ARHGEF40Q8TER5 1519 aa17.1■□□□□ 0.33
PTPRF-212ENST00000477970 ERBINQ96RT1 1412 aa17.1■□□□□ 0.33
PTPRF-212ENST00000477970 ADGRL1O94910 1474 aa17.09■□□□□ 0.33
PTPRF-212ENST00000477970 POGZQ7Z3K3 1410 aa17.08■□□□□ 0.33
PTPRF-212ENST00000477970 ATP10AO60312 1499 aa17.07■□□□□ 0.32
PTPRF-212ENST00000477970 ARID4BQ4LE39 1312 aaPredicted RBP17.07■□□□□ 0.32
PTPRF-212ENST00000477970 EFCAB2Q5VUJ9 269 aa17.05■□□□□ 0.32
PTPRF-212ENST00000477970 RTEL1-TNFRSF6BF6WH68 1400 aa17.05■□□□□ 0.32
PTPRF-212ENST00000477970 LAMC1P11047 1609 aa17.04■□□□□ 0.32
PTPRF-212ENST00000477970 REREQ9P2R6 1566 aa17.04■□□□□ 0.32
PTPRF-212ENST00000477970 ZNF518AQ6AHZ1 1483 aa17.04■□□□□ 0.32
PTPRF-212ENST00000477970 HECW2Q9P2P5 1572 aa17.03■□□□□ 0.32
PTPRF-212ENST00000477970 ZFYVE16Q7Z3T8 1539 aa17.02■□□□□ 0.32
PTPRF-212ENST00000477970 BCORL1Q5H9F3 1711 aa17.02■□□□□ 0.32
PTPRF-212ENST00000477970 SCAPERQ9BY12 1400 aa17.02■□□□□ 0.31
PTPRF-212ENST00000477970 DEPDC5O75140 1603 aa17.01■□□□□ 0.31
PTPRF-212ENST00000477970 TRPM1Q7Z4N2 1603 aa17■□□□□ 0.31
PTPRF-212ENST00000477970 USP47Q96K76 1375 aa16.99■□□□□ 0.31
PTPRF-212ENST00000477970 MLH3Q9UHC1 1453 aa16.99■□□□□ 0.31
PTPRF-212ENST00000477970 KIF7Q2M1P5 1343 aa16.99■□□□□ 0.31
PTPRF-212ENST00000477970 C11orf95C9JLR9 678 aaPredicted RBP16.99■□□□□ 0.31
PTPRF-212ENST00000477970 INO80Q9ULG1 1556 aaPredicted RBP16.99■□□□□ 0.31
PTPRF-212ENST00000477970 KIDINS220Q9ULH0 1771 aa16.98■□□□□ 0.31
PTPRF-212ENST00000477970 PLA2R1Q13018 1463 aa16.97■□□□□ 0.31
PTPRF-212ENST00000477970 ADAMTSL3P82987 1691 aa16.97■□□□□ 0.31
PTPRF-212ENST00000477970 EIF2AK4Q9P2K8 1649 aaKnown RBP16.97■□□□□ 0.31
PTPRF-212ENST00000477970 CCDC144AA2RUR9 1427 aa16.96■□□□□ 0.31
PTPRF-212ENST00000477970 SIGLEC1Q9BZZ2 1709 aa16.96■□□□□ 0.31
PTPRF-212ENST00000477970 ROCK2O75116 1388 aaKnown RBP16.96■□□□□ 0.31
PTPRF-212ENST00000477970 SUPT16HQ9Y5B9 1047 aaKnown RBP16.96■□□□□ 0.31
PTPRF-212ENST00000477970 DIP2CQ9Y2E4 1556 aa16.96■□□□□ 0.3
PTPRF-212ENST00000477970 ABCA6Q8N139 1617 aa16.95■□□□□ 0.3
PTPRF-212ENST00000477970 TRAPPC8Q9Y2L5 1435 aa16.95■□□□□ 0.3
PTPRF-212ENST00000477970 E9PCH4 1651 aa16.94■□□□□ 0.3
PTPRF-212ENST00000477970 PRAG1Q86YV5 1406 aa16.94■□□□□ 0.3
PTPRF-212ENST00000477970 RAPGEF3O95398 923 aa16.94■□□□□ 0.3
PTPRF-212ENST00000477970 VWDEQ8N2E2 1590 aa16.93■□□□□ 0.3
PTPRF-212ENST00000477970 NEURL4Q96JN8 1562 aa16.93■□□□□ 0.3
PTPRF-212ENST00000477970 GPRASP1Q5JY77 1395 aa16.93■□□□□ 0.3
PTPRF-212ENST00000477970 PRKRIP1Q9H875 184 aaPredicted RBP16.92■□□□□ 0.3
PTPRF-212ENST00000477970 TET3O43151 1660 aa16.91■□□□□ 0.3
PTPRF-212ENST00000477970 RNF17Q9BXT8 1623 aaKnown RBP16.91■□□□□ 0.3
PTPRF-212ENST00000477970 AGLP35573 1532 aa16.91■□□□□ 0.3
PTPRF-212ENST00000477970 DHX29Q7Z478 1369 aaKnown RBP16.9■□□□□ 0.3
PTPRF-212ENST00000477970 ATP7AQ04656 1500 aa16.9■□□□□ 0.3
PTPRF-212ENST00000477970 A2MP01023 1474 aa16.9■□□□□ 0.3
PTPRF-212ENST00000477970 TRPM2O94759 1503 aa16.9■□□□□ 0.3
PTPRF-212ENST00000477970 PRDM15P57071 1507 aaPredicted RBP16.9■□□□□ 0.3
PTPRF-212ENST00000477970 CEP152O94986 1710 aa16.9■□□□□ 0.3
PTPRF-212ENST00000477970 YEATS2Q9ULM3 1422 aa16.89■□□□□ 0.3
PTPRF-212ENST00000477970 SPHKAPQ2M3C7 1700 aa16.88■□□□□ 0.29
PTPRF-212ENST00000477970 PTPRTO14522 1441 aa16.86■□□□□ 0.29
PTPRF-212ENST00000477970 SPAG9O60271 1321 aaKnown RBP16.85■□□□□ 0.29
PTPRF-212ENST00000477970 KDM4FA0A1W2PPD8 638 aa16.85■□□□□ 0.29
PTPRF-212ENST00000477970 KTN1Q86UP2 1357 aaKnown RBP16.85■□□□□ 0.29
PTPRF-212ENST00000477970 FER1L4A9Z1Z3 1794 aa16.85■□□□□ 0.29
PTPRF-212ENST00000477970 CARD11Q9BXL7 1154 aa16.85■□□□□ 0.29
PTPRF-212ENST00000477970 DCAF11Q8TEB1 546 aa16.83■□□□□ 0.29
PTPRF-212ENST00000477970 MROH1Q8NDA8 1641 aa16.83■□□□□ 0.28
PTPRF-212ENST00000477970 MADDQ8WXG6 1647 aa16.82■□□□□ 0.28
PTPRF-212ENST00000477970 STAC3Q96MF2 364 aa16.81■□□□□ 0.28
PTPRF-212ENST00000477970 KIAA1210Q9ULL0 1709 aa16.8■□□□□ 0.28
PTPRF-212ENST00000477970 AFAP1Q8N556 730 aa16.8■□□□□ 0.28
PTPRF-212ENST00000477970 MROH2AA6NES4 1674 aa16.8■□□□□ 0.28
PTPRF-212ENST00000477970 LMTK2Q8IWU2 1503 aa16.8■□□□□ 0.28
PTPRF-212ENST00000477970 ZNF326Q5BKZ1 582 aaKnown RBP16.8■□□□□ 0.28
PTPRF-212ENST00000477970 RIMS1Q86UR5 1692 aaKnown RBP16.79■□□□□ 0.28
PTPRF-212ENST00000477970 CLTCL1P53675 1640 aa16.79■□□□□ 0.28
PTPRF-212ENST00000477970 IQGAP1P46940 1657 aa16.79■□□□□ 0.28
PTPRF-212ENST00000477970 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.76■□□□□ 0.27
PTPRF-212ENST00000477970 HNRNPUQ00839 825 aaKnown RBP eCLIP16.76■□□□□ 0.27
PTPRF-212ENST00000477970 ZBED9Q6R2W3 1325 aa16.76■□□□□ 0.27
PTPRF-212ENST00000477970 KANK1Q14678 1352 aa16.75■□□□□ 0.27
PTPRF-212ENST00000477970 ST20-MTHFSA0A0A6YYL1 179 aa16.75■□□□□ 0.27
PTPRF-212ENST00000477970 KDM2AQ9Y2K7 1162 aa16.75■□□□□ 0.27
PTPRF-212ENST00000477970 EFCAB6Q5THR3 1501 aa16.75■□□□□ 0.27
PTPRF-212ENST00000477970 CCDC184Q52MB2 194 aa16.75■□□□□ 0.27
PTPRF-212ENST00000477970 MRS2Q9HD23 443 aa16.74■□□□□ 0.27
PTPRF-212ENST00000477970 IFT172Q9UG01 1749 aa16.73■□□□□ 0.27
PTPRF-212ENST00000477970 NEFLP07196 543 aa16.73■□□□□ 0.27
PTPRF-212ENST00000477970 PTPRMP28827 1452 aa16.73■□□□□ 0.27
PTPRF-212ENST00000477970 MYOM2P54296 1465 aa16.71■□□□□ 0.27
PTPRF-212ENST00000477970 WASHC2CQ9Y4E1 1318 aa16.7■□□□□ 0.26
PTPRF-212ENST00000477970 FKBP8Q14318 412 aa16.7■□□□□ 0.26
PTPRF-212ENST00000477970 RALBP1Q15311 655 aa16.7■□□□□ 0.26
PTPRF-212ENST00000477970 ERICH6BQ5W0A0 696 aa16.7■□□□□ 0.26
PTPRF-212ENST00000477970 KIF1BO60333 1816 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms