RNA–Protein interactions for RNA: ENST00000476724.1

TMEM53-208, Transcript of transmembrane protein 53, humanhuman

TSL 1 (best)

Gene TMEM53, Length 2,075 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-208ENST00000476724 FAM135AQ9P2D6 1515 aa22.98■■□□□ 1.27
TMEM53-208ENST00000476724 MAP3K4Q9Y6R4 1608 aa22.98■■□□□ 1.27
TMEM53-208ENST00000476724 WASHC2AQ641Q2 1341 aa22.95■■□□□ 1.26
TMEM53-208ENST00000476724 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.94■■□□□ 1.26
TMEM53-208ENST00000476724 KIDINS220Q9ULH0 1771 aa22.94■■□□□ 1.26
TMEM53-208ENST00000476724 GLI2P10070 1586 aa22.94■■□□□ 1.26
TMEM53-208ENST00000476724 ZNF518AQ6AHZ1 1483 aa22.93■■□□□ 1.26
TMEM53-208ENST00000476724 IQGAP3Q86VI3 1631 aa22.92■■□□□ 1.26
TMEM53-208ENST00000476724 MAGI2Q86UL8 1455 aa22.92■■□□□ 1.26
TMEM53-208ENST00000476724 DIP2BQ9P265 1576 aa22.92■■□□□ 1.26
TMEM53-208ENST00000476724 MYT1LQ9UL68 1186 aa22.92■■□□□ 1.26
TMEM53-208ENST00000476724 POGZQ7Z3K3 1410 aa22.91■■□□□ 1.26
TMEM53-208ENST00000476724 NEO1Q92859 1461 aa22.9■■□□□ 1.26
TMEM53-208ENST00000476724 KDM5CP41229 1560 aa22.9■■□□□ 1.26
TMEM53-208ENST00000476724 NBPF8Q3BBV2 869 aa22.89■■□□□ 1.26
TMEM53-208ENST00000476724 CNTLNQ9NXG0 1405 aa22.87■■□□□ 1.25
TMEM53-208ENST00000476724 FAM69CQ0P6D2 419 aa22.87■■□□□ 1.25
TMEM53-208ENST00000476724 SPATA31E1Q6ZUB1 1445 aa22.85■■□□□ 1.25
TMEM53-208ENST00000476724 POLR1AO95602 1720 aaPredicted RBP22.85■■□□□ 1.25
TMEM53-208ENST00000476724 CCDC7Q96M83 1385 aa22.85■■□□□ 1.25
TMEM53-208ENST00000476724 DEPDC5O75140 1603 aa22.85■■□□□ 1.25
TMEM53-208ENST00000476724 TSPOAP1O95153 1857 aa22.84■■□□□ 1.25
TMEM53-208ENST00000476724 HECW2Q9P2P5 1572 aa22.84■■□□□ 1.25
TMEM53-208ENST00000476724 RAPGEF3O95398 923 aa22.83■■□□□ 1.24
TMEM53-208ENST00000476724 DHX29Q7Z478 1369 aaKnown RBP22.83■■□□□ 1.24
TMEM53-208ENST00000476724 PPRC1Q5VV67 1664 aaKnown RBP22.82■■□□□ 1.24
TMEM53-208ENST00000476724 EIF2AK4Q9P2K8 1649 aaKnown RBP22.81■■□□□ 1.24
TMEM53-208ENST00000476724 RICTORQ6R327 1708 aa22.81■■□□□ 1.24
TMEM53-208ENST00000476724 MLH3Q9UHC1 1453 aa22.81■■□□□ 1.24
TMEM53-208ENST00000476724 ABCA6Q8N139 1617 aa22.79■■□□□ 1.24
TMEM53-208ENST00000476724 PLA2R1Q13018 1463 aa22.79■■□□□ 1.24
TMEM53-208ENST00000476724 MROH1Q8NDA8 1641 aa22.78■■□□□ 1.24
TMEM53-208ENST00000476724 KIF3BO15066 747 aa22.78■■□□□ 1.24
TMEM53-208ENST00000476724 KIF13AQ9H1H9 1805 aa22.77■■□□□ 1.24
TMEM53-208ENST00000476724 FRMPD1Q5SYB0 1578 aa22.77■■□□□ 1.24
TMEM53-208ENST00000476724 A2MP01023 1474 aa22.77■■□□□ 1.24
TMEM53-208ENST00000476724 C11orf95C9JLR9 678 aaPredicted RBP22.77■■□□□ 1.23
TMEM53-208ENST00000476724 E9PCH4 1651 aa22.76■■□□□ 1.23
TMEM53-208ENST00000476724 VWDEQ8N2E2 1590 aa22.75■■□□□ 1.23
TMEM53-208ENST00000476724 UHRF1BP1Q6BDS2 1440 aa22.75■■□□□ 1.23
TMEM53-208ENST00000476724 PRDM15P57071 1507 aaPredicted RBP22.74■■□□□ 1.23
TMEM53-208ENST00000476724 KIF7Q2M1P5 1343 aa22.72■■□□□ 1.23
TMEM53-208ENST00000476724 CCDC144AA2RUR9 1427 aa22.72■■□□□ 1.23
TMEM53-208ENST00000476724 TET3O43151 1660 aa22.71■■□□□ 1.23
TMEM53-208ENST00000476724 ARID4BQ4LE39 1312 aaPredicted RBP22.71■■□□□ 1.23
TMEM53-208ENST00000476724 NEFLP07196 543 aa22.71■■□□□ 1.23
TMEM53-208ENST00000476724 DIP2CQ9Y2E4 1556 aa22.71■■□□□ 1.23
TMEM53-208ENST00000476724 PRKRIP1Q9H875 184 aaPredicted RBP22.7■■□□□ 1.23
TMEM53-208ENST00000476724 RNF17Q9BXT8 1623 aaKnown RBP22.69■■□□□ 1.22
TMEM53-208ENST00000476724 ATP10AO60312 1499 aa22.69■■□□□ 1.22
TMEM53-208ENST00000476724 KANK1Q14678 1352 aa22.68■■□□□ 1.22
TMEM53-208ENST00000476724 FKBP8Q14318 412 aa22.67■■□□□ 1.22
TMEM53-208ENST00000476724 YEATS2Q9ULM3 1422 aa22.67■■□□□ 1.22
TMEM53-208ENST00000476724 USP47Q96K76 1375 aa22.67■■□□□ 1.22
TMEM53-208ENST00000476724 RALGAPBQ86X10 1494 aa22.67■■□□□ 1.22
TMEM53-208ENST00000476724 CEP152O94986 1710 aa22.67■■□□□ 1.22
TMEM53-208ENST00000476724 SPHKAPQ2M3C7 1700 aa22.66■■□□□ 1.22
TMEM53-208ENST00000476724 HNRNPUQ00839 825 aaKnown RBP eCLIP22.66■■□□□ 1.22
TMEM53-208ENST00000476724 BCORL1Q5H9F3 1711 aa22.65■■□□□ 1.22
TMEM53-208ENST00000476724 ZNF326Q5BKZ1 582 aaKnown RBP22.64■■□□□ 1.22
TMEM53-208ENST00000476724 ZMYM4Q5VZL5 1548 aa22.62■■□□□ 1.21
TMEM53-208ENST00000476724 TRPM2O94759 1503 aa22.61■■□□□ 1.21
TMEM53-208ENST00000476724 DCAF11Q8TEB1 546 aa22.61■■□□□ 1.21
TMEM53-208ENST00000476724 KDM2AQ9Y2K7 1162 aa22.61■■□□□ 1.21
TMEM53-208ENST00000476724 GGT6Q6P531 493 aa22.61■■□□□ 1.21
TMEM53-208ENST00000476724 EFCAB6Q5THR3 1501 aa22.6■■□□□ 1.21
TMEM53-208ENST00000476724 PTPRTO14522 1441 aa22.6■■□□□ 1.21
TMEM53-208ENST00000476724 RGL3Q3MIN7 710 aa22.6■■□□□ 1.21
TMEM53-208ENST00000476724 ROCK2O75116 1388 aaKnown RBP22.59■■□□□ 1.21
TMEM53-208ENST00000476724 LMTK2Q8IWU2 1503 aa22.59■■□□□ 1.21
TMEM53-208ENST00000476724 CLTCL1P53675 1640 aa22.59■■□□□ 1.21
TMEM53-208ENST00000476724 MRS2Q9HD23 443 aa22.56■■□□□ 1.2
TMEM53-208ENST00000476724 COL17A1Q9UMD9 1497 aaPredicted RBP22.56■■□□□ 1.2
TMEM53-208ENST00000476724 CARD11Q9BXL7 1154 aa22.56■■□□□ 1.2
TMEM53-208ENST00000476724 CCDC184Q52MB2 194 aa22.54■■□□□ 1.2
TMEM53-208ENST00000476724 CFAP65Q6ZU64 1925 aaKnown RBP22.53■■□□□ 1.2
TMEM53-208ENST00000476724 UGGT1Q9NYU2 1555 aa22.53■■□□□ 1.2
TMEM53-208ENST00000476724 ABCC3O15438 1527 aa22.53■■□□□ 1.2
TMEM53-208ENST00000476724 PRAG1Q86YV5 1406 aa22.5■■□□□ 1.19
TMEM53-208ENST00000476724 BCANQ96GW7 911 aa22.5■■□□□ 1.19
TMEM53-208ENST00000476724 CAMSAP1Q5T5Y3 1602 aa22.5■■□□□ 1.19
TMEM53-208ENST00000476724 NPATQ14207 1427 aa22.5■■□□□ 1.19
TMEM53-208ENST00000476724 WASHC2CQ9Y4E1 1318 aa22.49■■□□□ 1.19
TMEM53-208ENST00000476724 TRPM1Q7Z4N2 1603 aa22.49■■□□□ 1.19
TMEM53-208ENST00000476724 ZBED9Q6R2W3 1325 aa22.48■■□□□ 1.19
TMEM53-208ENST00000476724 FAM9BQ8IZU0 186 aa22.48■■□□□ 1.19
TMEM53-208ENST00000476724 SIGLEC1Q9BZZ2 1709 aa22.48■■□□□ 1.19
TMEM53-208ENST00000476724 TSHZ2Q9NRE2 1034 aa22.47■■□□□ 1.19
TMEM53-208ENST00000476724 ERICH6BQ5W0A0 696 aa22.45■■□□□ 1.18
TMEM53-208ENST00000476724 KIF1BO60333 1816 aa22.44■■□□□ 1.18
TMEM53-208ENST00000476724 ZC3H13Q5T200 1668 aaKnown RBP22.44■■□□□ 1.18
TMEM53-208ENST00000476724 ST20-MTHFSA0A0A6YYL1 179 aa22.43■■□□□ 1.18
TMEM53-208ENST00000476724 REREQ9P2R6 1566 aa22.43■■□□□ 1.18
TMEM53-208ENST00000476724 POLR3GLQ9BT43 218 aa22.43■■□□□ 1.18
TMEM53-208ENST00000476724 MROH2AA6NES4 1674 aa22.43■■□□□ 1.18
TMEM53-208ENST00000476724 KTN1Q86UP2 1357 aaKnown RBP22.42■■□□□ 1.18
TMEM53-208ENST00000476724 LAMC1P11047 1609 aa22.41■■□□□ 1.18
TMEM53-208ENST00000476724 ARHGEF40Q8TER5 1519 aa22.4■■□□□ 1.18
TMEM53-208ENST00000476724 GPRASP1Q5JY77 1395 aa22.4■■□□□ 1.18
TMEM53-208ENST00000476724 NBPF1Q3BBV0 1214 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 189.3 ms