RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 CLTCQ00610 1675 aaKnown RBP18.69■□□□□ 0.58
SYNE1-223ENST00000476519 RRP7BPQ9NSQ0 103 aa18.68■□□□□ 0.58
SYNE1-223ENST00000476519 PKD2Q13563 968 aa18.67■□□□□ 0.58
SYNE1-223ENST00000476519 NCOA1Q15788 1441 aa18.66■□□□□ 0.58
SYNE1-223ENST00000476519 TCOF1Q13428 1488 aaKnown RBP18.66■□□□□ 0.58
SYNE1-223ENST00000476519 KIF15Q9NS87 1388 aa18.66■□□□□ 0.58
SYNE1-223ENST00000476519 SHANK2Q9UPX8 1470 aa18.65■□□□□ 0.58
SYNE1-223ENST00000476519 KDM5DQ9BY66 1539 aa18.65■□□□□ 0.58
SYNE1-223ENST00000476519 TNRQ92752 1358 aa18.65■□□□□ 0.58
SYNE1-223ENST00000476519 PZPP20742 1482 aa18.65■□□□□ 0.58
SYNE1-223ENST00000476519 DUOX2Q9NRD8 1548 aa18.64■□□□□ 0.58
SYNE1-223ENST00000476519 PTPN23Q9H3S7 1636 aa18.64■□□□□ 0.57
SYNE1-223ENST00000476519 DAPK1P53355 1430 aa18.64■□□□□ 0.57
SYNE1-223ENST00000476519 NCKAP5LQ9HCH0 1330 aa18.63■□□□□ 0.57
SYNE1-223ENST00000476519 ANKRD30AQ9BXX3 1397 aa18.63■□□□□ 0.57
SYNE1-223ENST00000476519 FAM50AQ14320 339 aaKnown RBP18.62■□□□□ 0.57
SYNE1-223ENST00000476519 CHIC2Q9UKJ5 165 aa18.62■□□□□ 0.57
SYNE1-223ENST00000476519 STRCQ7RTU9 1775 aa18.62■□□□□ 0.57
SYNE1-223ENST00000476519 THEMISQ8N1K5 641 aaPredicted RBP18.61■□□□□ 0.57
SYNE1-223ENST00000476519 CAMSAP1Q5T5Y3 1602 aa18.6■□□□□ 0.57
SYNE1-223ENST00000476519 A2ML1A8K2U0 1454 aa18.6■□□□□ 0.57
SYNE1-223ENST00000476519 PLA2R1Q13018 1463 aa18.6■□□□□ 0.57
SYNE1-223ENST00000476519 ERBINQ96RT1 1412 aa18.6■□□□□ 0.57
SYNE1-223ENST00000476519 CEP170BQ9Y4F5 1589 aaPredicted RBP18.58■□□□□ 0.56
SYNE1-223ENST00000476519 RNF17Q9BXT8 1623 aaKnown RBP18.57■□□□□ 0.56
SYNE1-223ENST00000476519 EIF2AK4Q9P2K8 1649 aaKnown RBP18.57■□□□□ 0.56
SYNE1-223ENST00000476519 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.57■□□□□ 0.56
SYNE1-223ENST00000476519 ABCC3O15438 1527 aa18.57■□□□□ 0.56
SYNE1-223ENST00000476519 ANKLE2Q86XL3 938 aa18.56■□□□□ 0.56
SYNE1-223ENST00000476519 NLRP1Q9C000 1473 aa18.56■□□□□ 0.56
SYNE1-223ENST00000476519 DNMT1P26358 1616 aaKnown RBP18.56■□□□□ 0.56
SYNE1-223ENST00000476519 MYO3AQ8NEV4 1616 aa18.55■□□□□ 0.56
SYNE1-223ENST00000476519 KANK1Q14678 1352 aa18.55■□□□□ 0.56
SYNE1-223ENST00000476519 ARHGAP31Q2M1Z3 1444 aa18.53■□□□□ 0.56
SYNE1-223ENST00000476519 ZNF142P52746 1687 aaPredicted RBP18.52■□□□□ 0.56
SYNE1-223ENST00000476519 ADGRL2O95490 1459 aa18.51■□□□□ 0.55
SYNE1-223ENST00000476519 MROH1Q8NDA8 1641 aa18.5■□□□□ 0.55
SYNE1-223ENST00000476519 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.5■□□□□ 0.55
SYNE1-223ENST00000476519 ERVK-7P63135 1459 aa18.49■□□□□ 0.55
SYNE1-223ENST00000476519 ZC3H13Q5T200 1668 aaKnown RBP18.49■□□□□ 0.55
SYNE1-223ENST00000476519 CROCC2H7BZ55 1655 aa18.48■□□□□ 0.55
SYNE1-223ENST00000476519 SPATA31D1Q6ZQQ2 1576 aa18.48■□□□□ 0.55
SYNE1-223ENST00000476519 ZNF335Q9H4Z2 1342 aaPredicted RBP18.48■□□□□ 0.55
SYNE1-223ENST00000476519 PRDM15P57071 1507 aaPredicted RBP18.47■□□□□ 0.55
SYNE1-223ENST00000476519 ANKRD50Q9ULJ7 1429 aa18.47■□□□□ 0.55
SYNE1-223ENST00000476519 UGGT1Q9NYU2 1555 aa18.47■□□□□ 0.55
SYNE1-223ENST00000476519 LTBP4Q8N2S1 1624 aa18.46■□□□□ 0.55
SYNE1-223ENST00000476519 PPARGC1BQ86YN6 1023 aaKnown RBP18.46■□□□□ 0.55
SYNE1-223ENST00000476519 ROCK1Q13464 1354 aa18.45■□□□□ 0.54
SYNE1-223ENST00000476519 IQSEC2Q5JU85 1478 aa18.44■□□□□ 0.54
SYNE1-223ENST00000476519 LMTK2Q8IWU2 1503 aa18.43■□□□□ 0.54
SYNE1-223ENST00000476519 DEPDC5O75140 1603 aa18.41■□□□□ 0.54
SYNE1-223ENST00000476519 MED14O60244 1454 aa18.41■□□□□ 0.54
SYNE1-223ENST00000476519 IDI1Q13907 227 aa18.41■□□□□ 0.54
SYNE1-223ENST00000476519 SLC52A1Q9NWF4 448 aa18.41■□□□□ 0.54
SYNE1-223ENST00000476519 VWDEQ8N2E2 1590 aa18.4■□□□□ 0.54
SYNE1-223ENST00000476519 TXNDC2Q86VQ3 553 aa18.4■□□□□ 0.54
SYNE1-223ENST00000476519 STAG3Q9UJ98 1225 aa18.4■□□□□ 0.54
SYNE1-223ENST00000476519 NPHP4O75161 1426 aaPredicted RBP18.4■□□□□ 0.54
SYNE1-223ENST00000476519 ITGAEP38570 1179 aa18.39■□□□□ 0.53
SYNE1-223ENST00000476519 EID1Q9Y6B2 187 aa18.39■□□□□ 0.53
SYNE1-223ENST00000476519 CEP152O94986 1710 aa18.37■□□□□ 0.53
SYNE1-223ENST00000476519 LTKP29376 864 aa18.36■□□□□ 0.53
SYNE1-223ENST00000476519 NOS1P29475 1434 aa18.36■□□□□ 0.53
SYNE1-223ENST00000476519 NEURL4Q96JN8 1562 aa18.35■□□□□ 0.53
SYNE1-223ENST00000476519 RPRD2Q5VT52 1461 aaKnown RBP18.34■□□□□ 0.53
SYNE1-223ENST00000476519 TMEM2Q9UHN6 1383 aa18.34■□□□□ 0.53
SYNE1-223ENST00000476519 UBAP1LF5GYI3 381 aa18.34■□□□□ 0.53
SYNE1-223ENST00000476519 ARHGAP23Q9P227 1491 aa18.33■□□□□ 0.52
SYNE1-223ENST00000476519 SLIT1O75093 1534 aa18.32■□□□□ 0.52
SYNE1-223ENST00000476519 SCAF11Q99590 1463 aaKnown RBP18.32■□□□□ 0.52
SYNE1-223ENST00000476519 CPS1P31327 1500 aa18.31■□□□□ 0.52
SYNE1-223ENST00000476519 EFCAB6Q5THR3 1501 aa18.31■□□□□ 0.52
SYNE1-223ENST00000476519 CFAP65Q6ZU64 1925 aaKnown RBP18.31■□□□□ 0.52
SYNE1-223ENST00000476519 RRBP1Q9P2E9 1410 aaKnown RBP18.31■□□□□ 0.52
SYNE1-223ENST00000476519 NUP155O75694 1391 aa18.3■□□□□ 0.52
SYNE1-223ENST00000476519 TOM1O60784 492 aa18.29■□□□□ 0.52
SYNE1-223ENST00000476519 HDGFP51858 240 aaKnown RBP18.29■□□□□ 0.52
SYNE1-223ENST00000476519 POLR1AO95602 1720 aaPredicted RBP18.29■□□□□ 0.52
SYNE1-223ENST00000476519 UBR1Q8IWV7 1749 aa18.28■□□□□ 0.52
SYNE1-223ENST00000476519 SYNMO15061 1565 aa18.24■□□□□ 0.51
SYNE1-223ENST00000476519 IQGAP1P46940 1657 aa18.24■□□□□ 0.51
SYNE1-223ENST00000476519 PIK3C2BO00750 1634 aa18.23■□□□□ 0.51
SYNE1-223ENST00000476519 UNC13BO14795 1591 aa18.23■□□□□ 0.51
SYNE1-223ENST00000476519 TET3O43151 1660 aa18.22■□□□□ 0.51
SYNE1-223ENST00000476519 KDM5AP29375 1690 aaKnown RBP18.22■□□□□ 0.51
SYNE1-223ENST00000476519 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.21■□□□□ 0.51
SYNE1-223ENST00000476519 CHGAP10645 457 aaKnown RBP18.2■□□□□ 0.5
SYNE1-223ENST00000476519 KCNA6P17658 529 aa18.2■□□□□ 0.5
SYNE1-223ENST00000476519 BCANQ96GW7 911 aa18.2■□□□□ 0.5
SYNE1-223ENST00000476519 SLC26A8Q96RN1 970 aa18.19■□□□□ 0.5
SYNE1-223ENST00000476519 ADGRB3O60242 1522 aa18.18■□□□□ 0.5
SYNE1-223ENST00000476519 NAIPQ13075 1403 aa18.18■□□□□ 0.5
SYNE1-223ENST00000476519 PPP1R15AO75807 674 aaPredicted RBP18.18■□□□□ 0.5
SYNE1-223ENST00000476519 PIP4K2BP78356 416 aa18.18■□□□□ 0.5
SYNE1-223ENST00000476519 LRRC7Q96NW7 1537 aa18.18■□□□□ 0.5
SYNE1-223ENST00000476519 IQGAP3Q86VI3 1631 aa18.17■□□□□ 0.5
SYNE1-223ENST00000476519 SCAF1Q9H7N4 1312 aaKnown RBP18.16■□□□□ 0.5
SYNE1-223ENST00000476519 ZFYVE9O95405 1425 aa18.15■□□□□ 0.5
SYNE1-223ENST00000476519 RIMS2Q9UQ26 1411 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms