RNA–Protein interactions for RNA: ENST00000476162.5

VARS2-207, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 1 (best)

Gene VARS2, Length 2,228 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-207ENST00000476162 ABCC1P33527 1531 aa22.07■■□□□ 1.12
VARS2-207ENST00000476162 CCDC144AA2RUR9 1427 aa22.07■■□□□ 1.12
VARS2-207ENST00000476162 CCDC184Q52MB2 194 aa22.06■■□□□ 1.12
VARS2-207ENST00000476162 BCORL1Q5H9F3 1711 aa22.05■■□□□ 1.12
VARS2-207ENST00000476162 PLA2R1Q13018 1463 aa22.05■■□□□ 1.12
VARS2-207ENST00000476162 ERBINQ96RT1 1412 aa22.04■■□□□ 1.12
VARS2-207ENST00000476162 HNRNPUQ00839 825 aaKnown RBP eCLIP22.03■■□□□ 1.12
VARS2-207ENST00000476162 POLR3GLQ9BT43 218 aa22.03■■□□□ 1.12
VARS2-207ENST00000476162 IQGAP3Q86VI3 1631 aa22.03■■□□□ 1.12
VARS2-207ENST00000476162 WDR7Q9Y4E6 1490 aa22.01■■□□□ 1.11
VARS2-207ENST00000476162 RGL3Q3MIN7 710 aa22.01■■□□□ 1.11
VARS2-207ENST00000476162 AFAP1Q8N556 730 aa22.01■■□□□ 1.11
VARS2-207ENST00000476162 MAGI2Q86UL8 1455 aa22■■□□□ 1.11
VARS2-207ENST00000476162 SPAG9O60271 1321 aaKnown RBP22■■□□□ 1.11
VARS2-207ENST00000476162 ARID4BQ4LE39 1312 aaPredicted RBP22■■□□□ 1.11
VARS2-207ENST00000476162 ARAP3Q8WWN8 1544 aa21.99■■□□□ 1.11
VARS2-207ENST00000476162 ST20-MTHFSA0A0A6YYL1 179 aa21.98■■□□□ 1.11
VARS2-207ENST00000476162 FKBP8Q14318 412 aa21.98■■□□□ 1.11
VARS2-207ENST00000476162 ROCK2O75116 1388 aaKnown RBP21.97■■□□□ 1.11
VARS2-207ENST00000476162 MRS2Q9HD23 443 aa21.97■■□□□ 1.11
VARS2-207ENST00000476162 DHX29Q7Z478 1369 aaKnown RBP21.96■■□□□ 1.11
VARS2-207ENST00000476162 PRAG1Q86YV5 1406 aa21.95■■□□□ 1.11
VARS2-207ENST00000476162 RTEL1-TNFRSF6BF6WH68 1400 aa21.95■■□□□ 1.1
VARS2-207ENST00000476162 FAM9BQ8IZU0 186 aa21.93■■□□□ 1.1
VARS2-207ENST00000476162 FANCAO15360 1455 aa21.93■■□□□ 1.1
VARS2-207ENST00000476162 ATP10AO60312 1499 aa21.93■■□□□ 1.1
VARS2-207ENST00000476162 A2MP01023 1474 aa21.93■■□□□ 1.1
VARS2-207ENST00000476162 ZFYVE16Q7Z3T8 1539 aa21.92■■□□□ 1.1
VARS2-207ENST00000476162 CNGB1Q14028 1251 aaPredicted RBP21.91■■□□□ 1.1
VARS2-207ENST00000476162 NEFLP07196 543 aa21.9■■□□□ 1.1
VARS2-207ENST00000476162 NBPF1Q3BBV0 1214 aa21.9■■□□□ 1.1
VARS2-207ENST00000476162 BCANQ96GW7 911 aa21.9■■□□□ 1.1
VARS2-207ENST00000476162 ASXL2Q76L83 1435 aa21.9■■□□□ 1.1
VARS2-207ENST00000476162 ABCA9Q8IUA7 1624 aa21.9■■□□□ 1.1
VARS2-207ENST00000476162 TRPM1Q7Z4N2 1603 aa21.89■■□□□ 1.1
VARS2-207ENST00000476162 OSCARQ8IYS5 282 aa21.88■■□□□ 1.09
VARS2-207ENST00000476162 SCAPERQ9BY12 1400 aa21.85■■□□□ 1.09
VARS2-207ENST00000476162 ADGRL1O94910 1474 aa21.85■■□□□ 1.09
VARS2-207ENST00000476162 GPRASP1Q5JY77 1395 aa21.84■■□□□ 1.09
VARS2-207ENST00000476162 MYT1LQ9UL68 1186 aa21.84■■□□□ 1.09
VARS2-207ENST00000476162 ATP7AQ04656 1500 aa21.84■■□□□ 1.09
VARS2-207ENST00000476162 INO80Q9ULG1 1556 aaPredicted RBP21.82■■□□□ 1.08
VARS2-207ENST00000476162 E9PCH4 1651 aa21.81■■□□□ 1.08
VARS2-207ENST00000476162 NPM1P06748 294 aaKnown RBP eCLIP21.8■■□□□ 1.08
VARS2-207ENST00000476162 KIF3BO15066 747 aa21.79■■□□□ 1.08
VARS2-207ENST00000476162 DEPDC5O75140 1603 aa21.79■■□□□ 1.08
VARS2-207ENST00000476162 ZBED9Q6R2W3 1325 aa21.78■■□□□ 1.08
VARS2-207ENST00000476162 EIF2AK4Q9P2K8 1649 aaKnown RBP21.77■■□□□ 1.08
VARS2-207ENST00000476162 PRDM15P57071 1507 aaPredicted RBP21.77■■□□□ 1.07
VARS2-207ENST00000476162 LAMC1P11047 1609 aa21.76■■□□□ 1.07
VARS2-207ENST00000476162 PTPRTO14522 1441 aa21.76■■□□□ 1.07
VARS2-207ENST00000476162 KANK1Q14678 1352 aa21.76■■□□□ 1.07
VARS2-207ENST00000476162 TRPM2O94759 1503 aa21.76■■□□□ 1.07
VARS2-207ENST00000476162 TESK2Q96S53 571 aa21.75■■□□□ 1.07
VARS2-207ENST00000476162 VWDEQ8N2E2 1590 aa21.72■■□□□ 1.07
VARS2-207ENST00000476162 TET3O43151 1660 aa21.72■■□□□ 1.07
VARS2-207ENST00000476162 SPHKAPQ2M3C7 1700 aa21.72■■□□□ 1.07
VARS2-207ENST00000476162 TMC1Q8TDI8 760 aa21.71■■□□□ 1.07
VARS2-207ENST00000476162 DISP3Q9P2K9 1392 aa21.7■■□□□ 1.06
VARS2-207ENST00000476162 CLTCL1P53675 1640 aa21.7■■□□□ 1.06
VARS2-207ENST00000476162 COL17A1Q9UMD9 1497 aaPredicted RBP21.7■■□□□ 1.06
VARS2-207ENST00000476162 PNISRQ8TF01 805 aaKnown RBP21.7■■□□□ 1.06
VARS2-207ENST00000476162 RALBP1Q15311 655 aa21.69■■□□□ 1.06
VARS2-207ENST00000476162 RBM19Q9Y4C8 960 aaKnown RBP21.69■■□□□ 1.06
VARS2-207ENST00000476162 CD109Q6YHK3 1445 aa21.68■■□□□ 1.06
VARS2-207ENST00000476162 ZNF518AQ6AHZ1 1483 aa21.68■■□□□ 1.06
VARS2-207ENST00000476162 KTN1Q86UP2 1357 aaKnown RBP21.68■■□□□ 1.06
VARS2-207ENST00000476162 MROH1Q8NDA8 1641 aa21.68■■□□□ 1.06
VARS2-207ENST00000476162 KIDINS220Q9ULH0 1771 aa21.68■■□□□ 1.06
VARS2-207ENST00000476162 CEP152O94986 1710 aa21.67■■□□□ 1.06
VARS2-207ENST00000476162 ERICH6Q7L0X2 663 aa21.67■■□□□ 1.06
VARS2-207ENST00000476162 MYBBP1AQ9BQG0 1328 aaKnown RBP21.67■■□□□ 1.06
VARS2-207ENST00000476162 MADDQ8WXG6 1647 aa21.67■■□□□ 1.06
VARS2-207ENST00000476162 RNF17Q9BXT8 1623 aaKnown RBP21.67■■□□□ 1.06
VARS2-207ENST00000476162 IRX6P78412 446 aaPredicted RBP21.67■■□□□ 1.06
VARS2-207ENST00000476162 TMF1P82094 1093 aa21.66■■□□□ 1.06
VARS2-207ENST00000476162 PER1O15534 1290 aaPredicted RBP21.65■■□□□ 1.06
VARS2-207ENST00000476162 STAC3Q96MF2 364 aa21.65■■□□□ 1.06
VARS2-207ENST00000476162 BRD4O60885 1362 aaPredicted RBP21.63■■□□□ 1.05
VARS2-207ENST00000476162 POGZQ7Z3K3 1410 aa21.61■■□□□ 1.05
VARS2-207ENST00000476162 PARD3Q8TEW0 1356 aa21.61■■□□□ 1.05
VARS2-207ENST00000476162 PANK3Q9H999 370 aa21.6■■□□□ 1.05
VARS2-207ENST00000476162 UGGT1Q9NYU2 1555 aa21.59■■□□□ 1.05
VARS2-207ENST00000476162 EFCAB6Q5THR3 1501 aa21.59■■□□□ 1.05
VARS2-207ENST00000476162 CFAP74Q9C0B2 1584 aa21.58■■□□□ 1.05
VARS2-207ENST00000476162 LRPPRCP42704 1394 aaKnown RBP21.58■■□□□ 1.04
VARS2-207ENST00000476162 SENP3-EIF4A1A0A087X0R7 540 aa21.57■■□□□ 1.04
VARS2-207ENST00000476162 NLRP13Q86W25 1043 aa21.57■■□□□ 1.04
VARS2-207ENST00000476162 MLH3Q9UHC1 1453 aa21.57■■□□□ 1.04
VARS2-207ENST00000476162 WASHC2CQ9Y4E1 1318 aa21.57■■□□□ 1.04
VARS2-207ENST00000476162 SCAF11Q99590 1463 aaKnown RBP21.56■■□□□ 1.04
VARS2-207ENST00000476162 IQGAP1P46940 1657 aa21.56■■□□□ 1.04
VARS2-207ENST00000476162 CC2D1BQ5T0F9 858 aaKnown RBP21.56■■□□□ 1.04
VARS2-207ENST00000476162 PPRC1Q5VV67 1664 aaKnown RBP21.55■■□□□ 1.04
VARS2-207ENST00000476162 NEURL4Q96JN8 1562 aa21.55■■□□□ 1.04
VARS2-207ENST00000476162 SMG6Q86US8 1419 aaKnown RBP21.55■■□□□ 1.04
VARS2-207ENST00000476162 MSH5O43196 834 aa21.55■■□□□ 1.04
VARS2-207ENST00000476162 LMTK2Q8IWU2 1503 aa21.54■■□□□ 1.04
VARS2-207ENST00000476162 GGT6Q6P531 493 aa21.54■■□□□ 1.04
VARS2-207ENST00000476162 ERICH6BQ5W0A0 696 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms