RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 NBPF3Q9H094 633 aa11.44□□□□□ -0.58
CCDC88A-212ENST00000474059 C6orf132Q5T0Z8 1188 aa11.41□□□□□ -0.58
CCDC88A-212ENST00000474059 GOLGA8CPA6NN73 597 aa11.4□□□□□ -0.58
CCDC88A-212ENST00000474059 KIAA1468Q9P260 1216 aa11.39□□□□□ -0.59
CCDC88A-212ENST00000474059 A0A0G2JS52 829 aa11.38□□□□□ -0.59
CCDC88A-212ENST00000474059 BCAMP50895 628 aa11.38□□□□□ -0.59
CCDC88A-212ENST00000474059 BBXQ8WY36 941 aaPredicted RBP11.38□□□□□ -0.59
CCDC88A-212ENST00000474059 EPAS1Q99814 870 aa11.38□□□□□ -0.59
CCDC88A-212ENST00000474059 DDX12PQ92771 950 aa11.36□□□□□ -0.59
CCDC88A-212ENST00000474059 SOWAHBA6NEL2 793 aa11.35□□□□□ -0.59
CCDC88A-212ENST00000474059 ONECUT3O60422 494 aaPredicted RBP11.35□□□□□ -0.59
CCDC88A-212ENST00000474059 PRIM1P49642 420 aaKnown RBP11.35□□□□□ -0.59
CCDC88A-212ENST00000474059 PDIA6Q15084 440 aa11.35□□□□□ -0.59
CCDC88A-212ENST00000474059 LAPTM4BQ86VI4 370 aa11.35□□□□□ -0.59
CCDC88A-212ENST00000474059 SEPT9Q9UHD8 586 aaPredicted RBP11.35□□□□□ -0.59
CCDC88A-212ENST00000474059 TRIM6-TRIM34B2RNG4 842 aa11.34□□□□□ -0.59
CCDC88A-212ENST00000474059 ANKK1Q8NFD2 765 aa11.34□□□□□ -0.59
CCDC88A-212ENST00000474059 RBM33Q96EV2 1170 aaKnown RBP11.34□□□□□ -0.59
CCDC88A-212ENST00000474059 ZFRQ96KR1 1074 aaKnown RBP11.34□□□□□ -0.59
CCDC88A-212ENST00000474059 ITGBL1O95965 494 aaPredicted RBP11.33□□□□□ -0.6
CCDC88A-212ENST00000474059 TSR1Q2NL82 804 aaKnown RBP11.32□□□□□ -0.6
CCDC88A-212ENST00000474059 RGS20O76081 388 aa11.3□□□□□ -0.6
CCDC88A-212ENST00000474059 EN1Q05925 392 aaPredicted RBP11.3□□□□□ -0.6
CCDC88A-212ENST00000474059 WBP1LQ9NX94 342 aa11.3□□□□□ -0.6
CCDC88A-212ENST00000474059 TSKSQ9UJT2 592 aa11.3□□□□□ -0.6
CCDC88A-212ENST00000474059 FAM198AQ9UFP1 575 aa11.28□□□□□ -0.6
CCDC88A-212ENST00000474059 C3orf80F5H4A9 247 aa11.27□□□□□ -0.61
CCDC88A-212ENST00000474059 NBR1Q14596 966 aa11.27□□□□□ -0.61
CCDC88A-212ENST00000474059 FAM98CQ17RN3 349 aaKnown RBP11.26□□□□□ -0.61
CCDC88A-212ENST00000474059 ARIH1Q9Y4X5 557 aaPredicted RBP11.25□□□□□ -0.61
CCDC88A-212ENST00000474059 SPRYD3Q8NCJ5 442 aa11.23□□□□□ -0.61
CCDC88A-212ENST00000474059 MAP3K7O43318 606 aa11.22□□□□□ -0.61
CCDC88A-212ENST00000474059 SPDYE16A6NNV3 312 aaPredicted RBP11.21□□□□□ -0.61
CCDC88A-212ENST00000474059 E2F4Q16254 413 aa11.2□□□□□ -0.62
CCDC88A-212ENST00000474059 NYAP1Q6ZVC0 841 aa11.2□□□□□ -0.62
CCDC88A-212ENST00000474059 HPS5Q9UPZ3 1129 aa11.19□□□□□ -0.62
CCDC88A-212ENST00000474059 SMAPO00193 183 aa11.18□□□□□ -0.62
CCDC88A-212ENST00000474059 CDCA7LQ96GN5 454 aa11.18□□□□□ -0.62
CCDC88A-212ENST00000474059 CDHR5Q9HBB8 845 aa11.18□□□□□ -0.62
CCDC88A-212ENST00000474059 RTN4Q9NQC3 1192 aaKnown RBP11.18□□□□□ -0.62
CCDC88A-212ENST00000474059 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.18□□□□□ -0.62
CCDC88A-212ENST00000474059 TSR3Q9UJK0 312 aaKnown RBP11.18□□□□□ -0.62
CCDC88A-212ENST00000474059 OSBPP22059 807 aa11.17□□□□□ -0.62
CCDC88A-212ENST00000474059 LRCH3Q96II8 777 aa11.17□□□□□ -0.62
CCDC88A-212ENST00000474059 IRX2Q9BZI1 471 aaPredicted RBP11.17□□□□□ -0.62
CCDC88A-212ENST00000474059 PRSS12P56730 875 aa11.16□□□□□ -0.62
CCDC88A-212ENST00000474059 PAXIP1Q6ZW49 1069 aaPredicted RBP11.14□□□□□ -0.63
CCDC88A-212ENST00000474059 PACS2Q86VP3 889 aa11.14□□□□□ -0.63
CCDC88A-212ENST00000474059 GRXCR2A6NFK2 248 aa11.13□□□□□ -0.63
CCDC88A-212ENST00000474059 KCNC4Q03721 635 aa11.13□□□□□ -0.63
CCDC88A-212ENST00000474059 SAMD7Q7Z3H4 446 aa11.12□□□□□ -0.63
CCDC88A-212ENST00000474059 TTC13Q8NBP0 860 aa11.11□□□□□ -0.63
CCDC88A-212ENST00000474059 CFAP44Q96MT7 982 aa11.11□□□□□ -0.63
CCDC88A-212ENST00000474059 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.11□□□□□ -0.63
CCDC88A-212ENST00000474059 AMER1Q5JTC6 1135 aaPredicted RBP11.1□□□□□ -0.63
CCDC88A-212ENST00000474059 TJAP1Q5JTD0 557 aa11.1□□□□□ -0.63
CCDC88A-212ENST00000474059 TATDN2Q93075 761 aa11.1□□□□□ -0.63
CCDC88A-212ENST00000474059 NPDC1Q9NQX5 325 aaPredicted RBP11.1□□□□□ -0.63
CCDC88A-212ENST00000474059 CERKQ8TCT0 537 aa11.07□□□□□ -0.64
CCDC88A-212ENST00000474059 PNMA3Q9UL41 463 aa11.06□□□□□ -0.64
CCDC88A-212ENST00000474059 LCE2BO14633 110 aa11.05□□□□□ -0.64
CCDC88A-212ENST00000474059 PPP4CP60510 307 aa11.05□□□□□ -0.64
CCDC88A-212ENST00000474059 RBM27Q9P2N5 1060 aaKnown RBP11.05□□□□□ -0.64
CCDC88A-212ENST00000474059 NBPF26B4DH59 902 aa11.04□□□□□ -0.64
CCDC88A-212ENST00000474059 NUDT18Q6ZVK8 323 aa11.04□□□□□ -0.64
CCDC88A-212ENST00000474059 APLP1P51693 650 aa11.02□□□□□ -0.65
CCDC88A-212ENST00000474059 MTRQ99707 1265 aa11.02□□□□□ -0.65
CCDC88A-212ENST00000474059 WDR70Q9NW82 654 aa11.02□□□□□ -0.65
CCDC88A-212ENST00000474059 PADI6Q6TGC4 694 aa11.01□□□□□ -0.65
CCDC88A-212ENST00000474059 ZNF516Q92618 1163 aa11□□□□□ -0.65
CCDC88A-212ENST00000474059 MLLT3P42568 568 aaPredicted RBP10.99□□□□□ -0.65
CCDC88A-212ENST00000474059 EYA1Q99502 592 aa10.96□□□□□ -0.65
CCDC88A-212ENST00000474059 IL21Q9HBE4 155 aa10.96□□□□□ -0.65
CCDC88A-212ENST00000474059 TSHZ2Q9NRE2 1034 aa10.96□□□□□ -0.65
CCDC88A-212ENST00000474059 SWT1Q5T5J6 900 aaKnown RBP10.95□□□□□ -0.66
CCDC88A-212ENST00000474059 PPP1R18Q6NYC8 613 aa10.94□□□□□ -0.66
CCDC88A-212ENST00000474059 NKX2-3Q8TAU0 364 aa10.94□□□□□ -0.66
CCDC88A-212ENST00000474059 KCNV2Q8TDN2 545 aa10.94□□□□□ -0.66
CCDC88A-212ENST00000474059 Q6ZNB5 142 aa10.92□□□□□ -0.66
CCDC88A-212ENST00000474059 PRKD2Q9BZL6 878 aa10.91□□□□□ -0.66
CCDC88A-212ENST00000474059 RNF40O75150 1001 aa10.9□□□□□ -0.66
CCDC88A-212ENST00000474059 ARHGEF1Q92888 912 aaKnown RBP10.9□□□□□ -0.66
CCDC88A-212ENST00000474059 PTGDRQ13258 359 aa10.88□□□□□ -0.67
CCDC88A-212ENST00000474059 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.87□□□□□ -0.67
CCDC88A-212ENST00000474059 COPS2P61201 443 aa10.86□□□□□ -0.67
CCDC88A-212ENST00000474059 GFRA3O60609 400 aa10.85□□□□□ -0.67
CCDC88A-212ENST00000474059 SLF2Q8IX21 1173 aa10.85□□□□□ -0.67
CCDC88A-212ENST00000474059 EMID1Q96A84 441 aaPredicted RBP10.84□□□□□ -0.67
CCDC88A-212ENST00000474059 ADGRG1Q9Y653 693 aa10.84□□□□□ -0.67
CCDC88A-212ENST00000474059 V9GY48 417 aaPredicted RBP10.84□□□□□ -0.67
CCDC88A-212ENST00000474059 LAPTM4AQ15012 233 aa10.82□□□□□ -0.68
CCDC88A-212ENST00000474059 HDGFP51858 240 aaKnown RBP10.81□□□□□ -0.68
CCDC88A-212ENST00000474059 FAM161AQ3B820 660 aa10.81□□□□□ -0.68
CCDC88A-212ENST00000474059 ZPR1O75312 459 aa10.8□□□□□ -0.68
CCDC88A-212ENST00000474059 NRG2O14511 850 aaPredicted RBP10.79□□□□□ -0.68
CCDC88A-212ENST00000474059 BLOC1S3Q6QNY0 202 aa10.79□□□□□ -0.68
CCDC88A-212ENST00000474059 TMEM134Q9H6X4 195 aa10.79□□□□□ -0.68
CCDC88A-212ENST00000474059 TRAF7Q6Q0C0 670 aa10.78□□□□□ -0.68
CCDC88A-212ENST00000474059 DNAJB2P25686 324 aa10.77□□□□□ -0.69
CCDC88A-212ENST00000474059 RCCD1A6NED2 376 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms