RNA–Protein interactions for RNA: ENST00000474020.5

ATPAF1-204, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2

Gene ATPAF1, Length 535 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-204ENST00000474020 PCDHGA10Q9Y5H3 936 aa9.73□□□□□ -0.85
ATPAF1-204ENST00000474020 RB1CC1Q8TDY2 1594 aa9.72□□□□□ -0.85
ATPAF1-204ENST00000474020 PTPREP23469 700 aa9.72□□□□□ -0.85
ATPAF1-204ENST00000474020 ADAM33Q9BZ11 813 aa9.72□□□□□ -0.85
ATPAF1-204ENST00000474020 SPDYE16A6NNV3 312 aaPredicted RBP9.71□□□□□ -0.86
ATPAF1-204ENST00000474020 TYW1BQ6NUM6 668 aa9.71□□□□□ -0.86
ATPAF1-204ENST00000474020 FBXW7Q969H0 707 aa9.71□□□□□ -0.86
ATPAF1-204ENST00000474020 HRO43593 1189 aa9.69□□□□□ -0.86
ATPAF1-204ENST00000474020 EPAS1Q99814 870 aa9.69□□□□□ -0.86
ATPAF1-204ENST00000474020 SLC4A5Q9BY07 1137 aa9.68□□□□□ -0.86
ATPAF1-204ENST00000474020 DDX12PQ92771 950 aa9.66□□□□□ -0.86
ATPAF1-204ENST00000474020 ZBED2Q9BTP6 218 aa9.66□□□□□ -0.86
ATPAF1-204ENST00000474020 VPS9D1Q9Y2B5 631 aa9.66□□□□□ -0.86
ATPAF1-204ENST00000474020 STAC3Q96MF2 364 aa9.65□□□□□ -0.86
ATPAF1-204ENST00000474020 PPP1R3GB7ZBB8 358 aa9.64□□□□□ -0.87
ATPAF1-204ENST00000474020 NBR1Q14596 966 aa9.62□□□□□ -0.87
ATPAF1-204ENST00000474020 RSF1Q96T23 1441 aaPredicted RBP9.62□□□□□ -0.87
ATPAF1-204ENST00000474020 C6orf132Q5T0Z8 1188 aa9.61□□□□□ -0.87
ATPAF1-204ENST00000474020 KCNV2Q8TDN2 545 aa9.61□□□□□ -0.87
ATPAF1-204ENST00000474020 ARHGEF1Q92888 912 aaKnown RBP9.61□□□□□ -0.87
ATPAF1-204ENST00000474020 COL9A1P20849 921 aa9.6□□□□□ -0.87
ATPAF1-204ENST00000474020 EN1Q05925 392 aaPredicted RBP9.6□□□□□ -0.87
ATPAF1-204ENST00000474020 BHMG1C9JSJ3 638 aaPredicted RBP9.59□□□□□ -0.87
ATPAF1-204ENST00000474020 RBM33Q96EV2 1170 aaKnown RBP9.59□□□□□ -0.87
ATPAF1-204ENST00000474020 GRXCR2A6NFK2 248 aa9.58□□□□□ -0.88
ATPAF1-204ENST00000474020 P3H3Q8IVL6 736 aa9.58□□□□□ -0.88
ATPAF1-204ENST00000474020 MAP3K7O43318 606 aa9.57□□□□□ -0.88
ATPAF1-204ENST00000474020 HAP1P54257 671 aaPredicted RBP9.56□□□□□ -0.88
ATPAF1-204ENST00000474020 PROX2Q3B8N5 592 aa9.56□□□□□ -0.88
ATPAF1-204ENST00000474020 RABGEF1Q9UJ41 708 aa9.56□□□□□ -0.88
ATPAF1-204ENST00000474020 TSR1Q2NL82 804 aaKnown RBP9.55□□□□□ -0.88
ATPAF1-204ENST00000474020 NBPF3Q9H094 633 aa9.55□□□□□ -0.88
ATPAF1-204ENST00000474020 HCSTQ9UBK5 93 aa9.55□□□□□ -0.88
ATPAF1-204ENST00000474020 ONECUT3O60422 494 aaPredicted RBP9.54□□□□□ -0.88
ATPAF1-204ENST00000474020 OSBPP22059 807 aa9.54□□□□□ -0.88
ATPAF1-204ENST00000474020 PRIM1P49642 420 aaKnown RBP9.54□□□□□ -0.88
ATPAF1-204ENST00000474020 MRPL50Q8N5N7 158 aaKnown RBP9.54□□□□□ -0.88
ATPAF1-204ENST00000474020 GOLGA8CPA6NN73 597 aa9.52□□□□□ -0.89
ATPAF1-204ENST00000474020 KCTD12Q96CX2 325 aaKnown RBP9.52□□□□□ -0.89
ATPAF1-204ENST00000474020 BAZ1AQ9NRL2 1556 aaPredicted RBP9.52□□□□□ -0.89
ATPAF1-204ENST00000474020 TRIM6-TRIM34B2RNG4 842 aa9.51□□□□□ -0.89
ATPAF1-204ENST00000474020 CERKQ8TCT0 537 aa9.5□□□□□ -0.89
ATPAF1-204ENST00000474020 KIAA1468Q9P260 1216 aa9.5□□□□□ -0.89
ATPAF1-204ENST00000474020 MLLT3P42568 568 aaPredicted RBP9.48□□□□□ -0.89
ATPAF1-204ENST00000474020 LAPTM4BQ86VI4 370 aa9.48□□□□□ -0.89
ATPAF1-204ENST00000474020 CECR2Q9BXF3 1484 aa9.47□□□□□ -0.89
ATPAF1-204ENST00000474020 MROH2BQ7Z745 1585 aa9.47□□□□□ -0.89
ATPAF1-204ENST00000474020 WNT2BQ93097 391 aa9.47□□□□□ -0.89
ATPAF1-204ENST00000474020 CDHR5Q9HBB8 845 aa9.47□□□□□ -0.89
ATPAF1-204ENST00000474020 PRSS12P56730 875 aa9.46□□□□□ -0.9
ATPAF1-204ENST00000474020 THSD4Q6ZMP0 1018 aa9.46□□□□□ -0.9
ATPAF1-204ENST00000474020 TSKSQ9UJT2 592 aa9.46□□□□□ -0.9
ATPAF1-204ENST00000474020 CDCA7LQ96GN5 454 aa9.45□□□□□ -0.9
ATPAF1-204ENST00000474020 KDM2AQ9Y2K7 1162 aa9.45□□□□□ -0.9
ATPAF1-204ENST00000474020 PACS2Q86VP3 889 aa9.44□□□□□ -0.9
ATPAF1-204ENST00000474020 RBM27Q9P2N5 1060 aaKnown RBP9.44□□□□□ -0.9
ATPAF1-204ENST00000474020 SEMA3EO15041 775 aa9.43□□□□□ -0.9
ATPAF1-204ENST00000474020 SEPT9Q9UHD8 586 aaPredicted RBP9.43□□□□□ -0.9
ATPAF1-204ENST00000474020 PTPN5P54829 565 aa9.42□□□□□ -0.9
ATPAF1-204ENST00000474020 FAM98CQ17RN3 349 aaKnown RBP9.42□□□□□ -0.9
ATPAF1-204ENST00000474020 VSIG10Q8N0Z9 540 aa9.42□□□□□ -0.9
ATPAF1-204ENST00000474020 ANKK1Q8NFD2 765 aa9.42□□□□□ -0.9
ATPAF1-204ENST00000474020 ZFRQ96KR1 1074 aaKnown RBP9.42□□□□□ -0.9
ATPAF1-204ENST00000474020 FAM198AQ9UFP1 575 aa9.42□□□□□ -0.9
ATPAF1-204ENST00000474020 NPDC1Q9NQX5 325 aaPredicted RBP9.41□□□□□ -0.9
ATPAF1-204ENST00000474020 WIZO95785 1651 aa9.39□□□□□ -0.91
ATPAF1-204ENST00000474020 SMARCA4P51532 1647 aa9.39□□□□□ -0.91
ATPAF1-204ENST00000474020 NBPF26B4DH59 902 aa9.39□□□□□ -0.91
ATPAF1-204ENST00000474020 TOP2AP11388 1531 aaKnown RBP9.39□□□□□ -0.91
ATPAF1-204ENST00000474020 SOWAHBA6NEL2 793 aa9.38□□□□□ -0.91
ATPAF1-204ENST00000474020 TTC13Q8NBP0 860 aa9.38□□□□□ -0.91
ATPAF1-204ENST00000474020 PLA2G2EQ9NZK7 142 aa9.38□□□□□ -0.91
ATPAF1-204ENST00000474020 TESPA1A2RU30 521 aaPredicted RBP9.37□□□□□ -0.91
ATPAF1-204ENST00000474020 PADI6Q6TGC4 694 aa9.37□□□□□ -0.91
ATPAF1-204ENST00000474020 TATDN2Q93075 761 aa9.37□□□□□ -0.91
ATPAF1-204ENST00000474020 UNC13AQ9UPW8 1703 aa9.36□□□□□ -0.91
ATPAF1-204ENST00000474020 SMAPO00193 183 aa9.36□□□□□ -0.91
ATPAF1-204ENST00000474020 BCAMP50895 628 aa9.36□□□□□ -0.91
ATPAF1-204ENST00000474020 PNMA3Q9UL41 463 aa9.36□□□□□ -0.91
ATPAF1-204ENST00000474020 C3orf80F5H4A9 247 aa9.35□□□□□ -0.91
ATPAF1-204ENST00000474020 PTGDRQ13258 359 aa9.35□□□□□ -0.91
ATPAF1-204ENST00000474020 SMYD5Q6GMV2 418 aa9.34□□□□□ -0.91
ATPAF1-204ENST00000474020 NYAP1Q6ZVC0 841 aa9.34□□□□□ -0.91
ATPAF1-204ENST00000474020 NUDT18Q6ZVK8 323 aa9.34□□□□□ -0.91
ATPAF1-204ENST00000474020 LRCH3Q96II8 777 aa9.34□□□□□ -0.91
ATPAF1-204ENST00000474020 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.34□□□□□ -0.91
ATPAF1-204ENST00000474020 NUTM2FA1L443 756 aa9.33□□□□□ -0.92
ATPAF1-204ENST00000474020 FCHSD2O94868 740 aa9.3□□□□□ -0.92
ATPAF1-204ENST00000474020 SAMD7Q7Z3H4 446 aa9.3□□□□□ -0.92
ATPAF1-204ENST00000474020 WBP1LQ9NX94 342 aa9.3□□□□□ -0.92
ATPAF1-204ENST00000474020 TSR3Q9UJK0 312 aaKnown RBP9.3□□□□□ -0.92
ATPAF1-204ENST00000474020 LOC105371045A0A1W2PR82 267 aa9.29□□□□□ -0.92
ATPAF1-204ENST00000474020 RBM26Q5T8P6 1007 aaKnown RBP9.29□□□□□ -0.92
ATPAF1-204ENST00000474020 HPS5Q9UPZ3 1129 aa9.29□□□□□ -0.92
ATPAF1-204ENST00000474020 BICRAQ9NZM4 1560 aa9.29□□□□□ -0.92
ATPAF1-204ENST00000474020 HDGFP51858 240 aaKnown RBP9.28□□□□□ -0.92
ATPAF1-204ENST00000474020 IFFO2Q5TF58 517 aa9.28□□□□□ -0.92
ATPAF1-204ENST00000474020 EYA1Q99502 592 aa9.27□□□□□ -0.93
ATPAF1-204ENST00000474020 SMARCA2P51531 1590 aa9.26□□□□□ -0.93
ATPAF1-204ENST00000474020 CCDC88BA6NC98 1476 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms